Rh7AG139800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011856
Physical Location & Seq
Forward (+)
11274630 .. 11275037
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG139800.1

Sequence Viewer

Length: 408 bp
ATGGACATGGACGACTTGGAGTCAATAGGCCATAATAGAAACAGCTCGCGCTGTTGCTTTTGCATCCCTTCGTCGTCGCGGTGGTGGGACCGGGTTCGGAACGACGACGGATGGTGGTCCAGAGGCAAGAGGGCCATTTACAAGGTCAGGGAGTGGTCTGAGATCGTCGCCGGTCCCAAGTGGAAGACTTTCATCCGGCGGTTCAATCGTAGCAAGAGCGGCGGCGGCGGAGGTAGGCACGGCAAGTTTCAGTACGATCCGTTGAGTTACGCTTTGAACTTCGACGAGGGCCCGGTGGCGGAGGAGGAGGACGAGTCGGGAGGGTTTCGCGATTTCTCGGCCCGGTTCGCTCCGGTAAAGAGCTCGGACCCGGTTCAGTTGGGGAAGGACGTTGCGGTTCATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.41

Weight (kDa)

8.49

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 3 cut(s) 49, 79, 330
AciI CCGC 8 cut(s) 79, 199, 219, 222, 225, 228, 299, 395
AclWI GGATC 1 cut(s) 251
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 2 cut(s) 205, 277
AhdI GACNNNNNGTC 1 cut(s) 19
AluBI AGCT 2 cut(s) 45, 363
AluI AGCT 2 cut(s) 45, 363
Alw21I GWGCWC 1 cut(s) 365
AlwI GGATC 1 cut(s) 251
AoxI GGCC 4 cut(s) 28, 132, 289, 339
ApaI GGGCCC 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 8 cut(s) 88, 117, 132, 173, 289, 290, 340, 367
AsuC2I CCSGG 4 cut(s) 92, 293, 343, 371
AvaII GGWCC 4 cut(s) 88, 117, 173, 367
BaeGI GKGCMC 1 cut(s) 293
BanII GRGCYC 2 cut(s) 293, 365
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 365
BccI CCATC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 256
BcnI CCSGG 4 cut(s) 92, 293, 343, 371
BisI GCNGC 3 cut(s) 220, 223, 226
BlsI GCNGC 3 cut(s) 221, 224, 227
Bme1390I CCNGG 4 cut(s) 92, 293, 343, 371
Bme18I GGWCC 4 cut(s) 88, 117, 173, 367
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 8 cut(s) 88, 117, 132, 173, 289, 290, 340, 367
BmiI GGNNCC 4 cut(s) 89, 175, 291, 369
BmrFI CCNGG 4 cut(s) 92, 293, 343, 371
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 191
BpuMI CCSGG 4 cut(s) 92, 293, 343, 371
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 170
BseGI GGATG 3 cut(s) 63, 116, 192
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 150
BseRI GAGGAG 2 cut(s) 317, 320
BseSI GKGCMC 1 cut(s) 293
Bsh1236I CGCG 3 cut(s) 49, 79, 330
BshFI GGCC 4 cut(s) 30, 134, 291, 341
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 7 cut(s) 91, 171, 196, 293, 343, 353, 371
BslFI GGGAC 2 cut(s) 101, 159
BslI CCNNNNNNNGG 1 cut(s) 298
BsmFI GGGAC 2 cut(s) 101, 159
BsnI GGCC 4 cut(s) 30, 134, 291, 341
Bsp120I GGGCCC 1 cut(s) 289
Bsp1286I GDGCHC 2 cut(s) 293, 365
Bsp143I GATC 2 cut(s) 162, 256
Bsp68I TCGCGA 1 cut(s) 330
BspACI CCGC 8 cut(s) 79, 199, 219, 222, 225, 228, 299, 395
BspANI GGCC 4 cut(s) 30, 134, 291, 341
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 3 cut(s) 49, 79, 330
BspLI GGNNCC 4 cut(s) 89, 175, 291, 369
BspPI GGATC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 2 cut(s) 162, 256
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 63, 116, 192
BstFNI CGCG 3 cut(s) 49, 79, 330
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 165, 259
BstMBI GATC 2 cut(s) 162, 256
BstMWI GCNNNNNNNGC 4 cut(s) 219, 225, 347, 401
BstSCI CCNGG 4 cut(s) 90, 291, 341, 369
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 3 cut(s) 49, 79, 330
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 4 cut(s) 30, 134, 291, 341
BtsCI GGATG 3 cut(s) 63, 116, 192
BtuMI TCGCGA 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 47
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 8 cut(s) 88, 117, 132, 173, 289, 290, 340, 367
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 7, 401
CviJI RGCY 6 cut(s) 30, 45, 134, 291, 341, 363
CviKI_1 RGCY 6 cut(s) 30, 45, 134, 291, 341, 363
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 164, 258
DpnII GATC 2 cut(s) 162, 256
DriI GACNNNNNGTC 1 cut(s) 19
Eam1105I GACNNNNNGTC 1 cut(s) 19
EciI GGCGGA 2 cut(s) 243, 314
Ecl136II GAGCTC 1 cut(s) 363
Eco24I GRGCYC 2 cut(s) 293, 365
Eco47I GGWCC 4 cut(s) 88, 117, 173, 367
Eco53kI GAGCTC 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 289
EcoT38I GRGCYC 2 cut(s) 293, 365
FaeI CATG 2 cut(s) 10, 404
FaiI YATR 3 cut(s) 8, 33, 402
FaqI GGGAC 2 cut(s) 101, 159
FatI CATG 2 cut(s) 6, 400
Fnu4HI GCNGC 3 cut(s) 220, 223, 226
FokI GGATG 3 cut(s) 50, 123, 179
FriOI GRGCYC 2 cut(s) 293, 365
Fsp4HI GCNGC 3 cut(s) 220, 223, 226
GlaI GCGC 1 cut(s) 50
GluI GCNGC 3 cut(s) 220, 223, 226
HaeIII GGCC 4 cut(s) 30, 134, 291, 341
HapII CCGG 7 cut(s) 91, 171, 196, 293, 343, 353, 371
HhaI GCGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 10, 404
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 2 cut(s) 20, 314
HpaII CCGG 7 cut(s) 91, 171, 196, 293, 343, 353, 371
Hpy188I TCNGA 3 cut(s) 99, 160, 367
Hpy188III TCNNGA 3 cut(s) 120, 318, 329
Hpy99I CGWCG 6 cut(s) 76, 79, 107, 110, 170, 287
HpyAV CCTTC 2 cut(s) 78, 379
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 225, 347, 401
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 2 cut(s) 10, 404
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 162, 256
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 9 cut(s) 104, 133, 133, 184, 209, 306, 356, 366, 384
LweI GCATC 1 cut(s) 72
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 266
MalI GATC 2 cut(s) 164, 258
MbiI CCGCTC 1 cut(s) 219
MboI GATC 2 cut(s) 162, 256
MboII GAAGA 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 293, 365
MlyI GAGTC 2 cut(s) 29, 323
MnlI CCTC 8 cut(s) 116, 123, 224, 280, 295, 298, 301, 314
MroXI GAANNNNTTC 1 cut(s) 188
MspI CCGG 7 cut(s) 91, 171, 196, 293, 343, 353, 371
MspR9I CCNGG 4 cut(s) 92, 293, 343, 371
MvnI CGCG 3 cut(s) 49, 79, 330
MwoI GCNNNNNNNGC 4 cut(s) 219, 225, 347, 401
NciI CCSGG 4 cut(s) 92, 293, 343, 371
NdeII GATC 2 cut(s) 162, 256
NlaIII CATG 2 cut(s) 10, 404
NlaIV GGNNCC 4 cut(s) 89, 175, 291, 369
NmeAIII GCCGAG 1 cut(s) 317
NruI TCGCGA 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 188
PkrI GCNGC 3 cut(s) 221, 224, 227
PleI GAGTC 2 cut(s) 28, 322
PpsI GAGTC 2 cut(s) 28, 322
Psp124BI GAGCTC 1 cut(s) 365
PspN4I GGNNCC 4 cut(s) 89, 175, 291, 369
PspOMI GGGCCC 1 cut(s) 289
PspPI GGNCC 8 cut(s) 88, 117, 132, 173, 289, 290, 340, 367
RruI TCGCGA 1 cut(s) 330
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SacI GAGCTC 1 cut(s) 365
SatI GCNGC 3 cut(s) 220, 223, 226
Sau3AI GATC 2 cut(s) 162, 256
Sau96I GGNCC 8 cut(s) 88, 117, 132, 173, 289, 290, 340, 367
SchI GAGTC 2 cut(s) 29, 323
ScrFI CCNGG 4 cut(s) 92, 293, 343, 371
SduI GDGCHC 2 cut(s) 293, 365
SetI ASST 5 cut(s) 47, 147, 235, 365, 393
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 4 cut(s) 88, 117, 173, 367
SsiI CCGC 8 cut(s) 79, 199, 219, 222, 225, 228, 299, 395
SstI GAGCTC 1 cut(s) 365
StyD4I CCNGG 4 cut(s) 90, 291, 341, 369
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 282
TauI GCSGC 3 cut(s) 222, 225, 228
TspDTI ATGAA 2 cut(s) 181, 389
TspGWI ACGGA 2 cut(s) 123, 249
VpaK11BI GGWCC 4 cut(s) 88, 117, 173, 367
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.