FvH4_5g05080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011856
Physical Location & Seq
Reverse (-)
2975210 .. 2975629
420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05080.t1

Sequence Viewer

Length: 420 bp
ATGGATGACTTGGAGGAGTCAATAGGCCACGGAAGAACCAGCTCGCGCTGCTGCTTCTGCATCCCTTCCTCGTCGCAGTGGTGGGACCGCGTCCGGAACGACGACGGATGGTGGTCCAGAGGCATGAGGGCGATTTACAAGGTCCGCGAGTGGTCGGAGATCGTCGCCGGCCCCAAGTGGAAGACTTTCATCCGGCGGTTCAATCGGAGCAAGAGCGGCGGCGGCAGCAGCAGCGGCGGAGGTAGGCACCGGAAGTTTCAGTACGATCCGTTGAGTTACGCTTTGAACTTCGACGAGGGTCCAGTGGGGGAGGAGGTGGACGAGTCCGGCGGGTTTCGTGATTTCTCGACGAGGTTTGCTCCGGTGAAGAGCTCGGAGCCGGTTCAGTCTGCCGGGAAAGACGCGGCGGTTTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.66

Weight (kDa)

8.49

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 4 cut(s) 46, 90, 147, 404
AccIII TCCGGA 1 cut(s) 93
AclWI GGATC 1 cut(s) 260
AfaI GTAC 1 cut(s) 263
AgsI TTSAA 2 cut(s) 202, 286
AluBI AGCT 2 cut(s) 42, 372
AluI AGCT 2 cut(s) 42, 372
Alw21I GWGCWC 1 cut(s) 374
AlwI GGATC 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 2 cut(s) 25, 169
ApeKI GCWGC 5 cut(s) 48, 51, 225, 228, 231
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 5 cut(s) 85, 114, 142, 170, 299
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 4 cut(s) 85, 114, 142, 299
BanI GGYRCC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 374
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 5 cut(s) 35, 38, 237, 240, 243
BccI CCATC 1 cut(s) 102
BcnI CCSGG 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 394
Bme18I GGWCC 4 cut(s) 85, 114, 142, 299
BmgT120I GGNCC 5 cut(s) 85, 114, 142, 170, 299
BmiI GGNNCC 5 cut(s) 86, 172, 248, 300, 378
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpuMI CCSGG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 28
BsaWI WCCGGW 3 cut(s) 93, 249, 361
Bse118I RCCGGY 2 cut(s) 167, 379
Bse1I ACTGG 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 4 cut(s) 10, 60, 113, 189
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 29, 326
BseXI GCAGC 5 cut(s) 35, 38, 237, 240, 243
Bsh1236I CGCG 4 cut(s) 46, 90, 147, 404
BshFI GGCC 2 cut(s) 27, 171
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 8 cut(s) 94, 168, 193, 250, 327, 362, 380, 393
BslFI GGGAC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 2 cut(s) 27, 171
Bsp1286I GDGCHC 1 cut(s) 374
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 2 cut(s) 159, 265
BspANI GGCC 2 cut(s) 27, 171
BspEI TCCGGA 1 cut(s) 93
BspFNI CGCG 4 cut(s) 46, 90, 147, 404
BspLI GGNNCC 5 cut(s) 86, 172, 248, 300, 378
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 2 cut(s) 167, 379
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 2 cut(s) 167, 379
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 2 cut(s) 159, 265
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 44, 169
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 4 cut(s) 10, 60, 113, 189
BstFNI CGCG 4 cut(s) 46, 90, 147, 404
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 2 cut(s) 162, 268
BstMBI GATC 2 cut(s) 159, 265
BstMWI GCNNNNNNNGC 9 cut(s) 48, 57, 216, 222, 225, 228, 231, 234, 413
BstPAI GACNNNNGTC 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 392
BstUI CGCG 4 cut(s) 46, 90, 147, 404
BstV1I GCAGC 5 cut(s) 35, 38, 237, 240, 243
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 27, 171
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 4 cut(s) 10, 60, 113, 189
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 83, 309
Cac8I GCNNGC 2 cut(s) 44, 169
CfoI GCGC 1 cut(s) 48
Cfr10I RCCGGY 2 cut(s) 167, 379
Cfr13I GGNCC 5 cut(s) 85, 114, 142, 170, 299
CseI GACGC 2 cut(s) 79, 410
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 124
CviJI RGCY 5 cut(s) 27, 42, 171, 372, 379
CviKI_1 RGCY 5 cut(s) 27, 42, 171, 372, 379
CviQI GTAC 1 cut(s) 262
DpnI GATC 2 cut(s) 161, 267
DpnII GATC 2 cut(s) 159, 265
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 374
Eco47I GGWCC 4 cut(s) 85, 114, 142, 299
Eco53kI GAGCTC 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 1 cut(s) 127
FaiI YATR 2 cut(s) 125, 414
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 123
FauI CCCGC 1 cut(s) 323
FokI GGATG 4 cut(s) 17, 47, 120, 176
FriOI GRGCYC 1 cut(s) 374
GlaI GCGC 1 cut(s) 47
HaeIII GGCC 2 cut(s) 27, 171
HapII CCGG 8 cut(s) 94, 168, 193, 250, 327, 362, 380, 393
HgaI GACGC 2 cut(s) 79, 410
HhaI GCGC 1 cut(s) 48
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 2 cut(s) 17, 323
HpaII CCGG 8 cut(s) 94, 168, 193, 250, 327, 362, 380, 393
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 157, 207, 376
Hpy188III TCNNGA 4 cut(s) 94, 117, 338, 346
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 6 cut(s) 76, 104, 107, 167, 296, 352
HpyAV CCTTC 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 9 cut(s) 48, 57, 216, 222, 225, 228, 231, 234, 413
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 46
Kpn2I TCCGGA 1 cut(s) 93
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 159, 265
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 3 cut(s) 207, 364, 376
Lsp1109I GCAGC 5 cut(s) 35, 38, 237, 240, 243
LweI GCATC 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 161, 267
MbiI CCGCTC 1 cut(s) 216
MboI GATC 2 cut(s) 159, 265
MboII GAAGA 3 cut(s) 45, 193, 379
MhlI GDGCHC 1 cut(s) 374
MlyI GAGTC 2 cut(s) 26, 332
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 9 cut(s) 7, 79, 113, 120, 233, 289, 304, 307, 345
MroI TCCGGA 1 cut(s) 93
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 8 cut(s) 94, 168, 193, 250, 327, 362, 380, 393
MspR9I CCNGG 1 cut(s) 394
MvnI CGCG 4 cut(s) 46, 90, 147, 404
MwoI GCNNNNNNNGC 9 cut(s) 48, 57, 216, 222, 225, 228, 231, 234, 413
NaeI GCCGGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 394
NdeII GATC 2 cut(s) 159, 265
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 5 cut(s) 86, 172, 248, 300, 378
PciSI GCTCTTC 1 cut(s) 362
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 89
PleI GAGTC 2 cut(s) 25, 331
PpsI GAGTC 2 cut(s) 25, 331
PshAI GACNNNNGTC 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 374
PspN4I GGNNCC 5 cut(s) 86, 172, 248, 300, 378
PspPI GGNCC 5 cut(s) 85, 114, 142, 170, 299
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 362
Sau3AI GATC 2 cut(s) 159, 265
Sau96I GGNCC 5 cut(s) 85, 114, 142, 170, 299
SchI GAGTC 2 cut(s) 26, 332
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 1 cut(s) 374
SetI ASST 6 cut(s) 44, 144, 244, 318, 356, 374
SfaNI GCATC 1 cut(s) 69
SinI GGWCC 4 cut(s) 85, 114, 142, 299
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 392
TaqI TCGA 2 cut(s) 291, 347
TauI GCSGC 5 cut(s) 219, 222, 225, 237, 407
TscAI CASTG 2 cut(s) 83, 309
TseI GCWGC 5 cut(s) 48, 51, 225, 228, 231
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 3 cut(s) 45, 120, 258
TspRI CASTG 2 cut(s) 83, 309
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 4 cut(s) 85, 114, 142, 299
XmnI GAANNNNTTC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.