Rmu_sc0037969.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037969.1
OG0011856
Physical Location & Seq
Forward (+)
209 .. 625
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037969.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
atggacatggacgacttggagtcaataggccataataggaacagctcgcgctgttgcttttgcatcccttcgtcgtcgcggtggtgggaccgggttcggaacgacgacggatggtggtccagaggcaagagggccatttacaaggtcagggagtggtccgagatcgtcgccggtcccaagtggaagactttcatccggcggttcaatcgtagcaagagcggcggcggaagcggcggcggtaggcacggcaagtttcagtacgatccgttgagttacgctttgaacttcgacgagggcccggtggcggaggaggaggacgagtcgggagggtttcgcgatttctcggcccggttcgctccggtgaagagctcggacccaacggttcagttggggaaggacgttacggttcatgcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.68

Weight (kDa)

8.49

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 3 cut(s) 49, 79, 336
AciI CCGC 9 cut(s) 79, 199, 219, 222, 225, 231, 234, 237, 305
AclWI GGATC 1 cut(s) 257
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 2 cut(s) 205, 283
AhdI GACNNNNNGTC 1 cut(s) 19
AluBI AGCT 2 cut(s) 45, 369
AluI AGCT 2 cut(s) 45, 369
Alw21I GWGCWC 1 cut(s) 371
AlwI GGATC 1 cut(s) 257
AoxI GGCC 4 cut(s) 28, 132, 295, 345
ApaI GGGCCC 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 9 cut(s) 88, 117, 132, 156, 173, 295, 296, 346, 373
AsuC2I CCSGG 3 cut(s) 92, 299, 349
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 5 cut(s) 88, 117, 156, 173, 373
BaeGI GKGCMC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 299, 371
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 371
BccI CCATC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 262
BcnI CCSGG 3 cut(s) 92, 299, 349
BisI GCNGC 4 cut(s) 220, 223, 232, 235
BlsI GCNGC 4 cut(s) 221, 224, 233, 236
Bme1390I CCNGG 3 cut(s) 92, 299, 349
Bme18I GGWCC 5 cut(s) 88, 117, 156, 173, 373
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 9 cut(s) 88, 117, 132, 156, 173, 295, 296, 346, 373
BmiI GGNNCC 4 cut(s) 89, 175, 297, 375
BmrFI CCNGG 3 cut(s) 92, 299, 349
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 191
BpuMI CCSGG 3 cut(s) 92, 299, 349
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 170
BseGI GGATG 3 cut(s) 63, 116, 192
BseLI CCNNNNNNNGG 1 cut(s) 304
BseRI GAGGAG 2 cut(s) 323, 326
BseSI GKGCMC 1 cut(s) 299
Bsh1236I CGCG 3 cut(s) 49, 79, 336
BshFI GGCC 4 cut(s) 30, 134, 297, 347
BsiHKAI GWGCWC 1 cut(s) 371
BsiSI CCGG 6 cut(s) 91, 171, 196, 299, 349, 359
BslFI GGGAC 2 cut(s) 101, 159
BslI CCNNNNNNNGG 1 cut(s) 304
BsmFI GGGAC 2 cut(s) 101, 159
BsnI GGCC 4 cut(s) 30, 134, 297, 347
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 299, 371
Bsp143I GATC 2 cut(s) 162, 262
Bsp68I TCGCGA 1 cut(s) 336
BspACI CCGC 9 cut(s) 79, 199, 219, 222, 225, 231, 234, 237, 305
BspANI GGCC 4 cut(s) 30, 134, 297, 347
BspFNI CGCG 3 cut(s) 49, 79, 336
BspLI GGNNCC 4 cut(s) 89, 175, 297, 375
BspPI GGATC 1 cut(s) 257
BspQI GCTCTTC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 2 cut(s) 162, 262
Bst4CI ACNGT 2 cut(s) 382, 406
Bst6I CTCTTC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 47
BstF5I GGATG 3 cut(s) 63, 116, 192
BstFNI CGCG 3 cut(s) 49, 79, 336
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 165, 265
BstMBI GATC 2 cut(s) 162, 262
BstMWI GCNNNNNNNGC 4 cut(s) 219, 228, 231, 353
BstSCI CCNGG 3 cut(s) 90, 297, 347
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 3 cut(s) 49, 79, 336
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 4 cut(s) 30, 134, 297, 347
BtsCI GGATG 3 cut(s) 63, 116, 192
BtuMI TCGCGA 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 47
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 9 cut(s) 88, 117, 132, 156, 173, 295, 296, 346, 373
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 7, 410
CviJI RGCY 6 cut(s) 30, 45, 134, 297, 347, 369
CviKI_1 RGCY 6 cut(s) 30, 45, 134, 297, 347, 369
CviQI GTAC 1 cut(s) 259
DpnI GATC 2 cut(s) 164, 264
DpnII GATC 2 cut(s) 162, 262
DriI GACNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 359
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 359
EciI GGCGGA 2 cut(s) 240, 320
Ecl136II GAGCTC 1 cut(s) 369
Eco24I GRGCYC 2 cut(s) 299, 371
Eco47I GGWCC 5 cut(s) 88, 117, 156, 173, 373
Eco53kI GAGCTC 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 295
EcoT38I GRGCYC 2 cut(s) 299, 371
FaeI CATG 2 cut(s) 10, 413
FaiI YATR 3 cut(s) 8, 33, 411
FaqI GGGAC 2 cut(s) 101, 159
FatI CATG 2 cut(s) 6, 409
Fnu4HI GCNGC 4 cut(s) 220, 223, 232, 235
FokI GGATG 3 cut(s) 50, 123, 179
FriOI GRGCYC 2 cut(s) 299, 371
Fsp4HI GCNGC 4 cut(s) 220, 223, 232, 235
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 220, 223, 232, 235
HaeIII GGCC 4 cut(s) 30, 134, 297, 347
HapII CCGG 6 cut(s) 91, 171, 196, 299, 349, 359
HhaI GCGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 10, 413
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 2 cut(s) 20, 320
HpaII CCGG 6 cut(s) 91, 171, 196, 299, 349, 359
HphI GGTGA 1 cut(s) 373
Hpy188I TCNGA 3 cut(s) 99, 160, 373
Hpy188III TCNNGA 3 cut(s) 120, 324, 335
Hpy99I CGWCG 6 cut(s) 76, 79, 107, 110, 170, 293
HpyAV CCTTC 2 cut(s) 78, 388
HpyCH4III ACNGT 2 cut(s) 382, 406
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 228, 231, 353
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 10, 413
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 162, 262
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 8 cut(s) 104, 133, 133, 184, 209, 312, 362, 372
LweI GCATC 1 cut(s) 72
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 272, 400
MalI GATC 2 cut(s) 164, 264
MbiI CCGCTC 1 cut(s) 219
MboI GATC 2 cut(s) 162, 262
MboII GAAGA 2 cut(s) 196, 376
MhlI GDGCHC 2 cut(s) 299, 371
MlyI GAGTC 2 cut(s) 29, 329
MnlI CCTC 7 cut(s) 116, 123, 286, 301, 304, 307, 320
MroXI GAANNNNTTC 1 cut(s) 188
MspI CCGG 6 cut(s) 91, 171, 196, 299, 349, 359
MspR9I CCNGG 3 cut(s) 92, 299, 349
MvnI CGCG 3 cut(s) 49, 79, 336
MwoI GCNNNNNNNGC 4 cut(s) 219, 228, 231, 353
NciI CCSGG 3 cut(s) 92, 299, 349
NdeII GATC 2 cut(s) 162, 262
NlaIII CATG 2 cut(s) 10, 413
NlaIV GGNNCC 4 cut(s) 89, 175, 297, 375
NmeAIII GCCGAG 1 cut(s) 323
NruI TCGCGA 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 188
PkrI GCNGC 4 cut(s) 221, 224, 233, 236
PleI GAGTC 2 cut(s) 28, 328
PpsI GAGTC 2 cut(s) 28, 328
Psp124BI GAGCTC 1 cut(s) 371
PspN4I GGNNCC 4 cut(s) 89, 175, 297, 375
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 9 cut(s) 88, 117, 132, 156, 173, 295, 296, 346, 373
RruI TCGCGA 1 cut(s) 336
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 359
SatI GCNGC 4 cut(s) 220, 223, 232, 235
Sau3AI GATC 2 cut(s) 162, 262
Sau96I GGNCC 9 cut(s) 88, 117, 132, 156, 173, 295, 296, 346, 373
SchI GAGTC 2 cut(s) 29, 329
ScrFI CCNGG 3 cut(s) 92, 299, 349
SduI GDGCHC 2 cut(s) 299, 371
SetI ASST 4 cut(s) 47, 147, 371, 402
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 5 cut(s) 88, 117, 156, 173, 373
SsiI CCGC 9 cut(s) 79, 199, 219, 222, 225, 231, 234, 237, 305
SstI GAGCTC 1 cut(s) 371
StyD4I CCNGG 3 cut(s) 90, 297, 347
TaaI ACNGT 2 cut(s) 382, 406
TaiI ACGT 1 cut(s) 402
TaqI TCGA 1 cut(s) 288
TauI GCSGC 4 cut(s) 222, 225, 234, 237
TspDTI ATGAA 2 cut(s) 181, 398
TspGWI ACGGA 2 cut(s) 123, 255
VpaK11BI GGWCC 5 cut(s) 88, 117, 156, 173, 373
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.