pycom14g15300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0011856
Physical Location & Seq
Forward (+)
17951150 .. 17951575
426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g15300.1

Sequence Viewer

Length: 426 bp
ATGGAAGACATTGACTTGGAGGCAATAGGCCATGGAGGATCAAGTTCGCGCTGCTGCTTCTGTATTCCCTCGTCATGGTCGCGGGTGCGGACCTCCCAAAACGACGACCGGTGGTGGTCCCGAGGCATCAAGGCCCTCTACAAGCTTCGAGAGTGGTCCGAGATCGTCGCCGGCCCCAAGTGGAAGACTTTCATCCGCCGGTTCAACCGAACCAGAAGCGGAGGCGGTTCCGGCGGCGGCGGCAGGCACGGGAAATTCCAATACGATCCCTTGAGTTACGCCCTGAACTTCGACGAGGGACCGGTCGACGAAGACGACGAACCCGGCGGGTTCCGCGATTTCTCGGCCCGGTTCGCCTCGATCCCGCAACCGGTGAAGTCCGGGGGGCCGCCGGAATCGGGTAAAGAAGTGTCGGTGTACGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.64

Weight (kDa)

7.71

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011856)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48020 AT5G62865
fragaria_vesca FvH4_5g05080
malus_domestica MD00G1171700.v1.1 MD14G1183900.v1.1
prunus_persica Prupe.5G176600_v2.0.a1
pyrus_communis pycom06g15780 pycom14g15300
rosa_chinensis RchiOBHm_Chr7g0193921
rosa_laevigata RLG00000004231 RLG00000004233
rosa_multiflora Rmu_sc0009542.1_g000001 Rmu_sc0037969.1_g000001
rosa_roxburghii Rroxscaffold_3G00261690
rosa_rugosa Rorug07G0012800
rosa_samantha Rh7AG139800 Rh7BG140200 Rh7DG141200
rosa_wichuraiana Rw7G011930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AccII CGCG 3 cut(s) 49, 82, 336
AclWI GGATC 3 cut(s) 46, 260, 355
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 3 cut(s) 75, 370, 398
AgeI ACCGGT 3 cut(s) 108, 301, 370
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AlwI GGATC 3 cut(s) 46, 260, 355
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 5 cut(s) 28, 132, 172, 345, 386
ApeKI GCWGC 2 cut(s) 51, 54
ApoI RAATTY 1 cut(s) 254
AsiGI ACCGGT 3 cut(s) 108, 301, 370
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 8 cut(s) 90, 117, 133, 156, 173, 299, 346, 386
AsuC2I CCSGG 3 cut(s) 324, 349, 382
AsuHPI GGTGA 1 cut(s) 385
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 4 cut(s) 90, 117, 156, 299
BbsI GAAGAC 3 cut(s) 12, 191, 318
BbvI GCAGC 2 cut(s) 38, 41
BcnI CCSGG 3 cut(s) 324, 349, 382
BisI GCNGC 6 cut(s) 52, 55, 235, 238, 241, 389
BlsI GCNGC 6 cut(s) 53, 56, 236, 239, 242, 390
Bme1390I CCNGG 3 cut(s) 324, 349, 382
Bme18I GGWCC 4 cut(s) 90, 117, 156, 299
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 8 cut(s) 90, 117, 133, 156, 173, 299, 346, 386
BmiI GGNNCC 6 cut(s) 119, 175, 229, 300, 332, 387
BmrFI CCNGG 3 cut(s) 324, 349, 382
BmsI GCATC 1 cut(s) 135
BpiI GAAGAC 3 cut(s) 12, 191, 318
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 3 cut(s) 324, 349, 382
BsaJI CCNNGG 3 cut(s) 31, 121, 381
BsaWI WCCGGW 3 cut(s) 108, 301, 370
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 370, 398
Bse118I RCCGGY 5 cut(s) 108, 170, 198, 301, 370
BseDI CCNNGG 3 cut(s) 31, 121, 381
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 3 cut(s) 75, 370, 398
BseXI GCAGC 2 cut(s) 38, 41
Bsh1236I CGCG 3 cut(s) 49, 82, 336
Bsh1285I CGRYCG 2 cut(s) 109, 306
BshFI GGCC 5 cut(s) 30, 134, 174, 347, 388
BshTI ACCGGT 3 cut(s) 108, 301, 370
BsiEI CGRYCG 2 cut(s) 109, 306
BsiHKCI CYCGRG 1 cut(s) 120
BslFI GGGAC 2 cut(s) 103, 312
BslI CCNNNNNNNGG 3 cut(s) 75, 370, 398
BsmFI GGGAC 2 cut(s) 103, 312
BsnI GGCC 5 cut(s) 30, 134, 174, 347, 388
BsoBI CYCGRG 1 cut(s) 120
Bsp143I GATC 4 cut(s) 38, 162, 265, 360
Bsp19I CCATGG 1 cut(s) 31
BspANI GGCC 5 cut(s) 30, 134, 174, 347, 388
BspFNI CGCG 3 cut(s) 49, 82, 336
BspLI GGNNCC 6 cut(s) 119, 175, 229, 300, 332, 387
BspPI GGATC 3 cut(s) 46, 260, 355
BsrFI RCCGGY 5 cut(s) 108, 170, 198, 301, 370
BssAI RCCGGY 5 cut(s) 108, 170, 198, 301, 370
BssECI CCNNGG 3 cut(s) 31, 121, 381
BssMI GATC 4 cut(s) 38, 162, 265, 360
BssT1I CCWWGG 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 172, 245
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 3 cut(s) 49, 82, 336
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 4 cut(s) 41, 165, 268, 363
BstMBI GATC 4 cut(s) 38, 162, 265, 360
BstMCI CGRYCG 2 cut(s) 109, 306
BstMWI GCNNNNNNNGC 4 cut(s) 231, 240, 333, 353
BstSCI CCNGG 3 cut(s) 322, 347, 380
BstUI CGCG 3 cut(s) 49, 82, 336
BstV1I GCAGC 2 cut(s) 38, 41
BstV2I GAAGAC 3 cut(s) 12, 191, 318
BsuRI GGCC 5 cut(s) 30, 134, 174, 347, 388
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 172, 245
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 5 cut(s) 108, 170, 198, 301, 370
Cfr13I GGNCC 8 cut(s) 90, 117, 133, 156, 173, 299, 346, 386
Csp6I GTAC 1 cut(s) 418
CspAI ACCGGT 3 cut(s) 108, 301, 370
CviAII CATG 2 cut(s) 32, 75
CviJI RGCY 6 cut(s) 30, 134, 145, 174, 347, 388
CviKI_1 RGCY 6 cut(s) 30, 134, 145, 174, 347, 388
CviQI GTAC 1 cut(s) 418
DpnI GATC 4 cut(s) 40, 164, 267, 362
DpnII GATC 4 cut(s) 38, 162, 265, 360
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 31
Eco47I GGWCC 4 cut(s) 90, 117, 156, 299
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 35, 78
FaiI YATR 2 cut(s) 33, 76
FaqI GGGAC 2 cut(s) 103, 312
FatI CATG 2 cut(s) 31, 74
FauI CCCGC 3 cut(s) 75, 320, 372
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 6 cut(s) 52, 55, 235, 238, 241, 389
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 6 cut(s) 52, 55, 235, 238, 241, 389
GlaI GCGC 1 cut(s) 50
GluI GCNGC 6 cut(s) 52, 55, 235, 238, 241, 389
HaeIII GGCC 5 cut(s) 30, 134, 174, 347, 388
HhaI GCGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 35, 78
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 395
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 307, 418
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 120, 149
Hpy8I GTNNAC 2 cut(s) 307, 418
Hpy99I CGWCG 5 cut(s) 107, 170, 296, 311, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 240, 333, 353
Hsp92II CATG 2 cut(s) 35, 78
HspAI GCGC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 4 cut(s) 38, 162, 265, 360
Lsp1109I GCAGC 2 cut(s) 38, 41
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 275
MalI GATC 4 cut(s) 40, 164, 267, 362
MboI GATC 4 cut(s) 38, 162, 265, 360
MboII GAAGA 3 cut(s) 17, 196, 323
MluCI AATT 1 cut(s) 254
MnlI CCTC 9 cut(s) 13, 29, 79, 103, 116, 146, 215, 289, 367
MroNI GCCGGC 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 188
MspR9I CCNGG 3 cut(s) 324, 349, 382
MvnI CGCG 3 cut(s) 49, 82, 336
MwoI GCNNNNNNNGC 4 cut(s) 231, 240, 333, 353
NaeI GCCGGC 1 cut(s) 172
NciI CCSGG 3 cut(s) 324, 349, 382
NcoI CCATGG 1 cut(s) 31
NdeII GATC 4 cut(s) 38, 162, 265, 360
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 2 cut(s) 35, 78
NlaIV GGNNCC 6 cut(s) 119, 175, 229, 300, 332, 387
NmeAIII GCCGAG 1 cut(s) 323
PcsI WCGNNNNNNNCGW 2 cut(s) 312, 315
PdiI GCCGGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 395
PinAI ACCGGT 3 cut(s) 108, 301, 370
PkrI GCNGC 6 cut(s) 53, 56, 236, 239, 242, 390
PspN4I GGNNCC 6 cut(s) 119, 175, 229, 300, 332, 387
PspPI GGNCC 8 cut(s) 90, 117, 133, 156, 173, 299, 346, 386
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SalI GTCGAC 1 cut(s) 305
SatI GCNGC 6 cut(s) 52, 55, 235, 238, 241, 389
Sau3AI GATC 4 cut(s) 38, 162, 265, 360
Sau96I GGNCC 8 cut(s) 90, 117, 133, 156, 173, 299, 346, 386
ScrFI CCNGG 3 cut(s) 324, 349, 382
SetI ASST 2 cut(s) 95, 147
SfaNI GCATC 1 cut(s) 135
SinI GGWCC 4 cut(s) 90, 117, 156, 299
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 1 cut(s) 254
StyD4I CCNGG 3 cut(s) 322, 347, 380
StyI CCWWGG 1 cut(s) 31
TaqI TCGA 4 cut(s) 148, 291, 306, 359
TasI AATT 1 cut(s) 254
TauI GCSGC 4 cut(s) 237, 240, 243, 391
TfiI GAWTC 1 cut(s) 395
TseI GCWGC 2 cut(s) 51, 54
TspDTI ATGAA 1 cut(s) 181
VpaK11BI GGWCC 4 cut(s) 90, 117, 156, 299
XapI RAATTY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.