AT3G48710

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006810
Physical Location & Seq
Forward (+)
18040675 .. 18044368
3694 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48710.1

Sequence Viewer

Length: 1389 bp
ATGGCGACTGAAACCCTAGAATTGAAAACACCACAACTAGCAGATACTGTTGCTGTTACCGAGAAGGACACAGAGACGAAGAAGAAGGATGAAGTAGAGAAAGATGAGGCCATGGAGGAGAAAGGAGAAGAAATTGATGGAGAAAAAGTTAAATCGCCGGTGACTCCAGTCAGTGAGAGACCTATAAGGGAGAGGAAGAGGACTGGCCGTTACGTTATAGATACTCCTCCTCGATCCTCCGGGAACAAGCCTCTGTCAATTACACAGGGTCGTGGAACACGGCTTAAGGAAATTCCAAATGTTGCTTATAAACTGTCCAAGAGAAAACCTGATGACAACCTCTTCTTACTTCACACCATTCTTTACGGCAAAAAAGCAAAGGCACAGATGCTAAAGAAAAACATTGGTCAGTTTTCGGGTTTTGTATGGTCAGAGCAAGAGGAGGAGAAGCAAAGAGCAAAAGCTAAAGAGAAGCTTGATAAATGTATCAAAGAAAAGTTGATTGATTTCTGTGATGTGCTTGATATACCAGTAAACAAAAGTACTGTGAAAAAGGAAGAACTGGCTGTAAGAGTGCTTGAATTTTTGGTATGTCCCAAAGCAACAAGGGATATTCTACTTGCTGATAGTGAAAAGGAAACTAAAAAGCGCAAGAAGAGCACATCGAAGAACGTGACCTCTGGAGAATCATCACATGTCCCAGCTAAGAGGAGAAGGCAGGCGAAGAAACAAGAACAGCCAACTGAGACTGAAGGAAATGGTGAGTCTGATGTTGGTTCCGAAGGAACAAATGACTCTAATGGAGAAGATGATGTAGCTCCAGAGGAAGAAAACAACAAAAGTGAAGATACTGAAACTGAAGATGAGAAAGATAAAGCCAAGGAGAAGACTAAGTCAACCGATAAGAAACGCTTGTCAAAAAGGACTAAGAAGGAGAAACCAGCAGCTGAAGAGGAGAAATCTATTAAAGGTTCTGCAAAATCTAGTCGAAAGTCCTTCAGACAAGTCGATAAATCAACTACATCATCAAGCAAGAAGCAAAAGGTTGATAAAGACGATTCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGCAAAAGGATCCAAAGATCAAGGACAATCCCGAAAGAAAGGTAAAAAAGAACCCACAAGAAAAGAACTGCATGTAGTGGTGACCAAAATTCTGAAGGAAGTAGACTTCAATACGGCAACTCTATCTGATATTCTACGGAAGCTTGGGAGCCATTTTGGAATTGATCTTATGCATAGAAAAGCAGAGGTGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATGATGATGAGAAAGAGGAAGACACAGAGGATGAAGGTGAGAAAGAGGGAAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

462

Amino Acids

52.07

Weight (kDa)

8.79

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 385 - 437 1e-12 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccI GTMKAC 1 cut(s) 1203
AclWI GGATC 3 cut(s) 228, 1104, 1117
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 3 cut(s) 291, 581, 1188
AcuI CTGAAG 5 cut(s) 771, 879, 969, 982, 1214
AfaI GTAC 1 cut(s) 544
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 3 cut(s) 25, 581, 1210
AluBI AGCT 6 cut(s) 464, 475, 704, 818, 947, 1243
AluI AGCT 6 cut(s) 464, 475, 704, 818, 947, 1243
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 3 cut(s) 68, 172, 740
AlwI GGATC 3 cut(s) 228, 1104, 1117
AlwNI CAGNNNCTG 2 cut(s) 47, 947
AoxI GGCC 2 cut(s) 108, 205
ApeKI GCWGC 1 cut(s) 944
ApoI RAATTY 3 cut(s) 291, 581, 1188
AspLEI GCGC 1 cut(s) 651
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 5 cut(s) 172, 773, 1192, 1300, 1379
BamHI GGATCC 1 cut(s) 1109
BbsI GAAGAC 2 cut(s) 893, 1356
Bbv12I GWGCWC 1 cut(s) 662
BbvI GCAGC 1 cut(s) 956
BccI CCATC 1 cut(s) 131
BceAI ACGGC 4 cut(s) 192, 296, 382, 1230
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 3 cut(s) 68, 172, 740
BfaI CTAG 4 cut(s) 17, 38, 984, 1387
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 945
BlsI GCNGC 1 cut(s) 946
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 3 cut(s) 778, 1111, 1250
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 378, 1297
BoxI GACNNNNGTC 1 cut(s) 167
BpiI GAAGAC 2 cut(s) 893, 1356
BpmI CTGGAG 3 cut(s) 150, 702, 804
BpuMI CCSGG 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 111, 879
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 4 cut(s) 167, 208, 530, 567
BseDI CCNNGG 2 cut(s) 111, 879
BseGI GGATG 2 cut(s) 94, 1366
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 4 cut(s) 167, 208, 530, 567
BseRI GAGGAG 7 cut(s) 131, 216, 219, 455, 458, 724, 968
BseXI GCAGC 1 cut(s) 956
BseYI CCCAGC 1 cut(s) 700
BshFI GGCC 2 cut(s) 110, 207
BsiHKAI GWGCWC 1 cut(s) 662
BsiSI CCGG 2 cut(s) 158, 240
BslFI GGGAC 2 cut(s) 579, 683
BsmAI GTCTC 3 cut(s) 68, 172, 740
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 579, 683
BsnI GGCC 2 cut(s) 110, 207
Bso31I GGTCTC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 662
Bsp143I GATC 4 cut(s) 233, 1109, 1117, 1264
Bsp19I CCATGG 1 cut(s) 111
BspANI GGCC 2 cut(s) 110, 207
BspCNI CTCAG 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 778, 1111, 1250
BspPI GGATC 3 cut(s) 228, 1104, 1117
BspQI GCTCTTC 1 cut(s) 650
BspTI CTTAAG 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 4 cut(s) 167, 208, 530, 567
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 111, 879
BssMI GATC 4 cut(s) 233, 1109, 1117, 1264
BssT1I CCWWGG 2 cut(s) 111, 879
Bst4CI ACNGT 3 cut(s) 49, 315, 547
Bst6I CTCTTC 4 cut(s) 191, 347, 650, 945
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 4 cut(s) 705, 744, 891, 927
BstDSI CCRYGG 1 cut(s) 111
BstEII GGTNACC 1 cut(s) 1180
BstF5I GGATG 2 cut(s) 94, 1366
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 4 cut(s) 236, 1112, 1120, 1267
BstMAI GTCTC 3 cut(s) 68, 172, 740
BstMBI GATC 4 cut(s) 233, 1109, 1117, 1264
BstMWI GCNNNNNNNGC 1 cut(s) 657
BstNSI RCATGY 2 cut(s) 698, 1175
BstPAI GACNNNNGTC 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 1180
BstSCI CCNGG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 956
BstV2I GAAGAC 2 cut(s) 893, 1356
BstX2I RGATCY 1 cut(s) 1109
BstYI RGATCY 1 cut(s) 1109
BsuRI GGCC 2 cut(s) 110, 207
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 94, 1366
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 720
CaiI CAGNNNCTG 2 cut(s) 47, 947
CfoI GCGC 1 cut(s) 651
Cfr10I RCCGGY 1 cut(s) 157
Csp6I GTAC 1 cut(s) 543
CviAII CATG 3 cut(s) 112, 695, 1172
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 4 cut(s) 705, 744, 891, 927
DpnI GATC 4 cut(s) 235, 1111, 1119, 1266
DpnII GATC 4 cut(s) 233, 1109, 1117, 1264
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 4 cut(s) 191, 347, 650, 945
EarI CTCTTC 4 cut(s) 191, 347, 650, 945
Eco130I CCWWGG 2 cut(s) 111, 879
Eco31I GGTCTC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 1297
Eco57I CTGAAG 5 cut(s) 771, 879, 969, 982, 1214
Eco91I GGTNACC 1 cut(s) 1180
EcoO65I GGTNACC 1 cut(s) 1180
EcoRV GATATC 1 cut(s) 1297
EcoT14I CCWWGG 2 cut(s) 111, 879
EcoT22I ATGCAT 1 cut(s) 1275
ErhI CCWWGG 2 cut(s) 111, 879
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 3 cut(s) 115, 698, 1175
FalI AAGNNNNNCTT 4 cut(s) 459, 491, 896, 928
FaqI GGGAC 2 cut(s) 579, 683
FatI CATG 3 cut(s) 111, 694, 1171
FblI GTMKAC 1 cut(s) 1203
Fnu4HI GCNGC 1 cut(s) 945
FokI GGATG 2 cut(s) 101, 1373
Fsp4HI GCNGC 1 cut(s) 945
FspBI CTAG 4 cut(s) 17, 38, 984, 1387
GlaI GCGC 1 cut(s) 650
GluI GCNGC 1 cut(s) 945
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 3 cut(s) 150, 702, 804
HaeIII GGCC 2 cut(s) 110, 207
HapII CCGG 2 cut(s) 158, 240
HhaI GCGC 1 cut(s) 651
Hin1II CATG 3 cut(s) 115, 698, 1175
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 1 cut(s) 897
HindII GTYRAC 1 cut(s) 897
HindIII AAGCTT 2 cut(s) 473, 1241
HinfI GANTC 5 cut(s) 163, 686, 764, 794, 1058
HpaII CCGG 2 cut(s) 158, 240
HphI GGTGA 5 cut(s) 172, 773, 1192, 1300, 1379
Hpy166II GTNNAC 4 cut(s) 535, 897, 1094, 1204
Hpy188I TCNGA 6 cut(s) 433, 769, 781, 1001, 1194, 1228
Hpy188III TCNNGA 3 cut(s) 681, 821, 1131
Hpy8I GTNNAC 4 cut(s) 535, 897, 1094, 1204
HpyCH4III ACNGT 3 cut(s) 49, 315, 547
HpyCH4IV ACGT 2 cut(s) 213, 672
HpyCH4V TGCA 3 cut(s) 977, 1171, 1273
HpyF10VI GCNNNNNNNGC 1 cut(s) 657
HpyF3I CTNAG 4 cut(s) 705, 744, 891, 927
HpySE526I ACGT 2 cut(s) 213, 672
Hsp92II CATG 3 cut(s) 115, 698, 1175
HspAI GCGC 1 cut(s) 649
Kzo9I GATC 4 cut(s) 233, 1109, 1117, 1264
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 2 cut(s) 823, 1248
Lsp1109I GCAGC 1 cut(s) 956
LweI GCATC 2 cut(s) 378, 1297
MaeI CTAG 4 cut(s) 17, 38, 984, 1387
MaeII ACGT 2 cut(s) 213, 672
MaeIII GTNAC 5 cut(s) 55, 160, 209, 673, 1180
MalI GATC 4 cut(s) 235, 1111, 1119, 1266
MboI GATC 4 cut(s) 233, 1109, 1117, 1264
MflI RGATCY 1 cut(s) 1109
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 7 cut(s) 20, 132, 258, 291, 581, 1188, 1260
MlyI GAGTC 3 cut(s) 157, 773, 788
Mph1103I ATGCAT 1 cut(s) 1275
MseI TTAA 4 cut(s) 150, 285, 966, 1314
MspA1I CMGCKG 1 cut(s) 947
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 158, 240
MspR9I CCNGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 657
NciI CCSGG 1 cut(s) 241
NcoI CCATGG 1 cut(s) 111
NdeII GATC 4 cut(s) 233, 1109, 1117, 1264
NlaIII CATG 3 cut(s) 115, 698, 1175
NlaIV GGNNCC 3 cut(s) 778, 1111, 1250
NmuCI GTSAC 3 cut(s) 160, 673, 1180
NsiI ATGCAT 1 cut(s) 1275
NspI RCATGY 2 cut(s) 698, 1175
PciI ACATGT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 650
PfeI GAWTC 2 cut(s) 686, 1058
PflFI GACNNNGTC 1 cut(s) 892
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 1 cut(s) 946
PleI GAGTC 3 cut(s) 157, 772, 788
PpsI GAGTC 3 cut(s) 157, 772, 788
PscI ACATGT 1 cut(s) 694
PshAI GACNNNNGTC 1 cut(s) 167
PsiI TTATAA 1 cut(s) 309
PspEI GGTNACC 1 cut(s) 1180
PspFI CCCAGC 1 cut(s) 700
PspN4I GGNNCC 3 cut(s) 778, 1111, 1250
PstNI CAGNNNCTG 2 cut(s) 47, 947
PsuI RGATCY 1 cut(s) 1109
PsyI GACNNNGTC 1 cut(s) 892
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 4 cut(s) 150, 285, 966, 1314
SatI GCNGC 1 cut(s) 945
Sau3AI GATC 4 cut(s) 233, 1109, 1117, 1264
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 3 cut(s) 157, 773, 788
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 2 cut(s) 378, 1297
SgrAI CRCCGGYG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 7 cut(s) 20, 132, 258, 291, 581, 1188, 1260
SspMI CTAG 4 cut(s) 17, 38, 984, 1387
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 2 cut(s) 111, 879
TaaI ACNGT 3 cut(s) 49, 315, 547
TaiI ACGT 2 cut(s) 216, 675
TaqI TCGA 4 cut(s) 232, 665, 988, 1008
TasI AATT 7 cut(s) 20, 132, 258, 291, 581, 1188, 1260
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 2 cut(s) 686, 1058
Tru1I TTAA 4 cut(s) 150, 285, 966, 1314
Tru9I TTAA 4 cut(s) 150, 285, 966, 1314
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 3 cut(s) 160, 673, 1180
TseI GCWGC 1 cut(s) 944
Tsp45I GTSAC 3 cut(s) 160, 673, 1180
TspDTI ATGAA 2 cut(s) 105, 1377
TspGWI ACGGA 1 cut(s) 1252
TspRI CASTG 1 cut(s) 178
Tth111I GACNNNGTC 1 cut(s) 892
Vha464I CTTAAG 1 cut(s) 284
XapI RAATTY 3 cut(s) 291, 581, 1188
XceI RCATGY 2 cut(s) 698, 1175
XmiI GTMKAC 1 cut(s) 1203
XspI CTAG 4 cut(s) 17, 38, 984, 1387
ZrmI AGTACT 1 cut(s) 544
Zsp2I ATGCAT 1 cut(s) 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.