Rroxscaffold_3G00265330

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006810
Physical Location & Seq
Forward (+)
58739593 .. 58744546
4954 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00265330.1

Sequence Viewer

Length: 1653 bp
ATGGCGTCCGAAGCCCTAGAGGAGAAGAAGCCGGAAGAAGAAGCTCCTGTTGAGGATAAACAGGAGGTTGAAGCTGAAGAGGAGGCTAAAGAGGAGCCCGGAGAGAAAGAGGATCTGCCGGAAGTCGCCGAGAAGGCGACGGAGAACGAGGAAGAGGTAGCTGAGGAAGGTGAAGGAACTCCCAAGAAAGGTAAGCGGACTCGGAGAGCCAGCTCGAAGAGCCAGACGGAGTCGAAGAAGCGAGGCGGAGACTCAGCTGTGAAGAAGCCGAAGAAGGAAGCAGAGGTGGAAAAGAAGGAGAAGGAGCCGGTTACTCCGGTGAGTGAGAGGCCTACTAGGGAGAGGAAAGTAGTTGAGAGATACTCAGCTCCCGAGAGTGGAAGGTCTTCTGCCACGAAACCATTGAACATTGAGAAGGGTCGTGGAACTCAGCTCAAGGATATTCCAAATGTGGCTTTCAAGTTATCGAAGAGAAAACCGGATGACAATCTTCAATTACTGCACACAATTCTTTTTGGGAAAAAAGCAAAGTCTCACAGTTTAAAGAGAAACATCGTCCAGTTTTCAGGTTATGTGTGGGCTGAGAATGAGCAAGAAAAACAGAGGACAAGGGTAAAGGAGAAGCTTGATAAGTGTGTTAAAGAAAAGTTAATGGATTTTTGTGACGTGCTTAATATTCAAATCAATAAAGCTGGCACAAAGAAGGAAGAACTTTCTGCAAAGTTATTGGAGTTCTTGGAATCCCCACATGCTACAACTGATGTTTTGCTTGCTGAAAAGGAACAGAAAGGGCAAAAGCGTAAGAAGAAGATTACACCAAGTAAAATTGCAGGTTCTGGAGAAGGATCACCGGAAACTCCAGCCAAGAAACAAAAGGACACACCCAGTGTTGAAAAGAATGAAGAGTCAACCAAAGATGAAGAGGACGAATTTGATGATAAAGTTGAACCTTCAGATCCAAAGGATGATCCTCTTGAAGAAGATGATGATGACAGGATGAATGAAGAAACTGATCATGGGGATAAATCTGATGAAGAGGAAGATGAACTAAAGGACCAGGTGTCAAGTCCAAAAAGTTCATCCAAAGATGTGAAGGAGGGGTCAAAGGTTAAAACTGGGGGCAAGTCAACACCAGCTAAGAAGAAAACCCCTGCAAAGTCTGTGAAAACTCCTACAGAGTCTGAAAAGAAATCTCGTTCTACTTCAAAAAGAGGTGCAAGTGATGCTGATGGAGCTTCTGGTTCAAAAGCAAAGGGATCTGTGAAAAAACAGAAAACTGAAAAGGAAAGCCCAAAGGATAGTAAGGCAAAAACCACTAGCAAAAAACAGTCGAGCAAGTCCCCAGCCAAGGTTCCAGCAAAGGATCAAGTGAAAGGCAAAACTAGCAAGAAGGCAAAGGCAGAGCCCACAAAAGAAGATGTGCATGCTGTAATTGTTGACATTCTGAAGGAAGTGGACTTCAATACTGCAACTTTATCTGATATTCTCAGGCAACTTGGTACCCACTTTGGTATTGATTTAATGCATAGAAAAGCGGAGGTGAAGGACATAATTACGGATGTAATTAATAACATGACTGATGAAGAAGAAGAGGATGAAGAAGAGGAAGCAGCTGGTGATGATTCAGAGAAAGAGGACCATGATGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

550

Amino Acids

61.08

Weight (kDa)

5.47

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 469 - 521 4.4e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 821
Acc65I GGTACC 1 cut(s) 1499
AccB1I GGYRCC 1 cut(s) 1499
AciI CCGC 3 cut(s) 196, 246, 1535
AclWI GGATC 6 cut(s) 120, 853, 950, 962, 1264, 1371
AcsI RAATTY 1 cut(s) 929
AcuI CTGAAG 3 cut(s) 96, 936, 1466
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 887
AfaI GTAC 1 cut(s) 1501
AfiI CCNNNNNNNGG 3 cut(s) 188, 377, 1348
AhdI GACNNNNNGTC 1 cut(s) 1060
AjiI CACGTC 1 cut(s) 667
AjnI CCWGG 1 cut(s) 1056
Alw26I GTCTC 2 cut(s) 243, 537
AlwI GGATC 6 cut(s) 120, 853, 950, 962, 1264, 1371
AlwNI CAGNNNCTG 2 cut(s) 836, 1181
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 1610
ApoI RAATTY 1 cut(s) 929
AseI ATTAAT 1 cut(s) 1566
Asp700I GAANNNNTTC 1 cut(s) 385
Asp718I GGTACC 1 cut(s) 1499
AspS9I GGNCC 2 cut(s) 1054, 1636
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 5 cut(s) 182, 331, 840, 1552, 1628
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 2 cut(s) 1054, 1636
BanI GGYRCC 1 cut(s) 1499
BanII GRGCYC 2 cut(s) 99, 1407
BbsI GAAGAC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 1622
BccI CCATC 1 cut(s) 1223
BciT130I CCWGG 1 cut(s) 1058
BclI TGATCA 1 cut(s) 1012
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 243, 537
BfaI CTAG 4 cut(s) 17, 336, 1317, 1383
BfmI CTRYAG 1 cut(s) 1173
BfuAI ACCTGC 1 cut(s) 821
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 1611
BlsI GCNGC 1 cut(s) 1612
Bme1390I CCNGG 2 cut(s) 99, 1058
Bme18I GGWCC 2 cut(s) 1054, 1636
BmeRI GACNNNNNGTC 1 cut(s) 1060
BmeT110I CYCGRG 1 cut(s) 371
BmgBI CACGTC 1 cut(s) 667
BmgT120I GGNCC 2 cut(s) 1054, 1636
BmiI GGNNCC 4 cut(s) 96, 306, 1353, 1501
BmrFI CCNGG 2 cut(s) 99, 1058
BmrI ACTGGG 2 cut(s) 879, 1125
BmsI GCATC 2 cut(s) 1213, 1636
BmuI ACTGGG 2 cut(s) 879, 1125
BpiI GAAGAC 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 2 cut(s) 843, 858
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 1347
BsaWI WCCGGW 3 cut(s) 316, 478, 850
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 377, 1348
Bse118I RCCGGY 1 cut(s) 307
Bse1I ACTGG 3 cut(s) 559, 885, 1120
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 1058
BseDI CCNNGG 1 cut(s) 1347
BseGI GGATG 6 cut(s) 487, 970, 1002, 1079, 1564, 1600
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 3 cut(s) 188, 377, 1348
BseMII CTCAG 6 cut(s) 153, 267, 378, 443, 573, 1501
BseNI ACTGG 3 cut(s) 559, 885, 1120
BseRI GAGGAG 3 cut(s) 35, 95, 107
BseXI GCAGC 1 cut(s) 1622
BseYI CCCAGC 1 cut(s) 1342
BsgI GTGCAG 1 cut(s) 485
BshFI GGCC 1 cut(s) 331
BshNI GGYRCC 1 cut(s) 1499
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 7 cut(s) 32, 99, 119, 308, 317, 479, 851
BslFI GGGAC 1 cut(s) 1324
BslI CCNNNNNNNGG 3 cut(s) 188, 377, 1348
BsmAI GTCTC 2 cut(s) 243, 537
BsmFI GGGAC 1 cut(s) 1324
BsnI GGCC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 99, 1407
Bsp143I GATC 7 cut(s) 112, 845, 955, 967, 1012, 1256, 1363
BspACI CCGC 3 cut(s) 196, 246, 1535
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 6 cut(s) 154, 266, 377, 442, 574, 1500
BspLI GGNNCC 4 cut(s) 96, 306, 1353, 1501
BspMI ACCTGC 1 cut(s) 821
BspPI GGATC 6 cut(s) 120, 853, 950, 962, 1264, 1371
BspQI GCTCTTC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 1499
BsrFI RCCGGY 1 cut(s) 307
BsrI ACTGG 3 cut(s) 559, 885, 1120
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 1347
BssMI GATC 7 cut(s) 112, 845, 955, 967, 1012, 1256, 1363
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 1347
Bst2UI CCWGG 1 cut(s) 1058
Bst4CI ACNGT 2 cut(s) 539, 1329
Bst6I CTCTTC 9 cut(s) 72, 147, 212, 464, 897, 915, 1029, 1584, 1596
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1223
BstC8I GCNNGC 4 cut(s) 211, 694, 771, 1425
BstDEI CTNAG 8 cut(s) 162, 253, 364, 429, 582, 1137, 1487, 1650
BstF5I GGATG 6 cut(s) 487, 970, 1002, 1079, 1564, 1600
BstKTI GATC 7 cut(s) 115, 848, 958, 970, 1015, 1259, 1366
BstMAI GTCTC 2 cut(s) 243, 537
BstMBI GATC 7 cut(s) 112, 845, 955, 967, 1012, 1256, 1363
BstMWI GCNNNNNNNGC 6 cut(s) 11, 134, 219, 1223, 1232, 1383
BstNI CCWGG 1 cut(s) 1058
BstNSI RCATGY 2 cut(s) 752, 1427
BstSCI CCNGG 2 cut(s) 97, 1056
BstSFI CTRYAG 1 cut(s) 1173
BstV1I GCAGC 1 cut(s) 1622
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 3 cut(s) 112, 955, 1256
BstYI RGATCY 3 cut(s) 112, 955, 1256
BsuRI GGCC 1 cut(s) 331
BtrI CACGTC 1 cut(s) 667
BtsCI GGATG 6 cut(s) 487, 970, 1002, 1079, 1564, 1600
BtsIMutI CAGTG 1 cut(s) 892
BveI ACCTGC 1 cut(s) 821
Cac8I GCNNGC 4 cut(s) 211, 694, 771, 1425
CaiI CAGNNNCTG 2 cut(s) 836, 1181
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 1054, 1636
CsiI ACCWGGT 1 cut(s) 1056
Csp6I GTAC 1 cut(s) 1500
CviAII CATG 5 cut(s) 749, 1016, 1424, 1573, 1640
CviQI GTAC 1 cut(s) 1500
DdeI CTNAG 8 cut(s) 162, 253, 364, 429, 582, 1137, 1487, 1650
DpnI GATC 7 cut(s) 114, 847, 957, 969, 1014, 1258, 1365
DpnII GATC 7 cut(s) 112, 845, 955, 967, 1012, 1256, 1363
DraI TTTAAA 1 cut(s) 543
DraIII CACNNNGTG 1 cut(s) 887
DriI GACNNNNNGTC 1 cut(s) 1060
Eam1104I CTCTTC 9 cut(s) 72, 147, 212, 464, 897, 915, 1029, 1584, 1596
Eam1105I GACNNNNNGTC 1 cut(s) 1060
EarI CTCTTC 9 cut(s) 72, 147, 212, 464, 897, 915, 1029, 1584, 1596
EciI GGCGGA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 1347
Eco147I AGGCCT 1 cut(s) 331
Eco24I GRGCYC 2 cut(s) 99, 1407
Eco47I GGWCC 2 cut(s) 1054, 1636
Eco57I CTGAAG 3 cut(s) 96, 936, 1466
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 1056
EcoT14I CCWWGG 1 cut(s) 1347
EcoT22I ATGCAT 1 cut(s) 1527
EcoT38I GRGCYC 2 cut(s) 99, 1407
ErhI CCWWGG 1 cut(s) 1347
FaeI CATG 5 cut(s) 752, 1019, 1427, 1576, 1643
FaiI YATR 8 cut(s) 573, 750, 1017, 1425, 1527, 1550, 1574, 1641
FaqI GGGAC 1 cut(s) 1324
FatI CATG 5 cut(s) 748, 1015, 1423, 1572, 1639
FbaI TGATCA 1 cut(s) 1012
Fnu4HI GCNGC 1 cut(s) 1611
FokI GGATG 6 cut(s) 494, 977, 1009, 1066, 1571, 1607
FriOI GRGCYC 2 cut(s) 99, 1407
Fsp4HI GCNGC 1 cut(s) 1611
FspBI CTAG 4 cut(s) 17, 336, 1317, 1383
GluI GCNGC 1 cut(s) 1611
GsaI CCCAGC 1 cut(s) 1346
GsuI CTGGAG 2 cut(s) 843, 858
HaeIII GGCC 1 cut(s) 331
HapII CCGG 7 cut(s) 32, 99, 119, 308, 317, 479, 851
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 752, 1019, 1427, 1576, 1643
HincII GTYRAC 3 cut(s) 909, 1128, 1438
HindII GTYRAC 3 cut(s) 909, 1128, 1438
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 7 cut(s) 199, 230, 251, 740, 905, 1178, 1622
HpaII CCGG 7 cut(s) 32, 99, 119, 308, 317, 479, 851
HphI GGTGA 5 cut(s) 182, 331, 840, 1552, 1628
Hpy166II GTNNAC 4 cut(s) 909, 1128, 1438, 1456
Hpy188I TCNGA 8 cut(s) 10, 204, 955, 1030, 1183, 1446, 1480, 1627
Hpy188III TCNNGA 3 cut(s) 371, 837, 974
Hpy8I GTNNAC 4 cut(s) 909, 1128, 1438, 1456
Hpy99I CGWCG 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 539, 1329
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 8 cut(s) 502, 719, 830, 1154, 1217, 1423, 1469, 1525
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 134, 219, 1223, 1232, 1383
HpyF3I CTNAG 8 cut(s) 162, 253, 364, 429, 582, 1137, 1487, 1650
HpySE526I ACGT 1 cut(s) 666
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 752, 1019, 1427, 1576, 1643
KpnI GGTACC 1 cut(s) 1503
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 7 cut(s) 112, 845, 955, 967, 1012, 1256, 1363
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 5 cut(s) 49, 94, 304, 373, 1232
Lsp1109I GCAGC 1 cut(s) 1622
LweI GCATC 2 cut(s) 1213, 1636
MabI ACCWGGT 1 cut(s) 1056
MaeI CTAG 4 cut(s) 17, 336, 1317, 1383
MaeII ACGT 1 cut(s) 666
MaeIII GTNAC 2 cut(s) 310, 662
MalI GATC 7 cut(s) 114, 847, 957, 969, 1014, 1258, 1365
MboI GATC 7 cut(s) 112, 845, 955, 967, 1012, 1256, 1363
MflI RGATCY 3 cut(s) 112, 955, 1256
MhlI GDGCHC 2 cut(s) 99, 1407
MluCI AATT 7 cut(s) 494, 507, 825, 929, 1431, 1551, 1563
MlyI GAGTC 5 cut(s) 193, 239, 245, 914, 1187
Mph1103I ATGCAT 1 cut(s) 1527
MroXI GAANNNNTTC 1 cut(s) 385
MseI TTAA 7 cut(s) 542, 639, 650, 672, 1110, 1520, 1566
MslI CAYNNNNRTG 1 cut(s) 1644
MspA1I CMGCKG 2 cut(s) 257, 1613
MspI CCGG 7 cut(s) 32, 99, 119, 308, 317, 479, 851
MspR9I CCNGG 2 cut(s) 99, 1058
MvaI CCWGG 1 cut(s) 1058
MwoI GCNNNNNNNGC 6 cut(s) 11, 134, 219, 1223, 1232, 1383
NciI CCSGG 1 cut(s) 99
NdeII GATC 7 cut(s) 112, 845, 955, 967, 1012, 1256, 1363
NlaIII CATG 5 cut(s) 752, 1019, 1427, 1576, 1643
NlaIV GGNNCC 4 cut(s) 96, 306, 1353, 1501
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 662
NsiI ATGCAT 1 cut(s) 1527
NspI RCATGY 2 cut(s) 752, 1427
PaeI GCATGC 1 cut(s) 1427
PceI AGGCCT 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 385
PfeI GAWTC 2 cut(s) 740, 1622
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 1612
PleI GAGTC 5 cut(s) 193, 238, 245, 913, 1186
PpsI GAGTC 5 cut(s) 193, 238, 245, 913, 1186
PshBI ATTAAT 1 cut(s) 1566
Psp6I CCWGG 1 cut(s) 1056
PspFI CCCAGC 1 cut(s) 1342
PspGI CCWGG 1 cut(s) 1056
PspN4I GGNNCC 4 cut(s) 96, 306, 1353, 1501
PspPI GGNCC 2 cut(s) 1054, 1636
PstNI CAGNNNCTG 2 cut(s) 836, 1181
PsuI RGATCY 3 cut(s) 112, 955, 1256
PsyI GACNNNGTC 1 cut(s) 229
PvuII CAGCTG 2 cut(s) 257, 1613
RsaI GTAC 1 cut(s) 1501
RsaNI GTAC 1 cut(s) 1500
RseI CAYNNNNRTG 1 cut(s) 1644
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 7 cut(s) 542, 639, 650, 672, 1110, 1520, 1566
SatI GCNGC 1 cut(s) 1611
Sau3AI GATC 7 cut(s) 112, 845, 955, 967, 1012, 1256, 1363
Sau96I GGNCC 2 cut(s) 1054, 1636
SchI GAGTC 5 cut(s) 193, 239, 245, 914, 1187
ScrFI CCNGG 2 cut(s) 99, 1058
SduI GDGCHC 2 cut(s) 99, 1407
SexAI ACCWGGT 1 cut(s) 1056
SfaNI GCATC 2 cut(s) 1213, 1636
SfcI CTRYAG 1 cut(s) 1173
SinI GGWCC 2 cut(s) 1054, 1636
SmiMI CAYNNNNRTG 1 cut(s) 1644
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SphI GCATGC 1 cut(s) 1427
Sse9I AATT 7 cut(s) 494, 507, 825, 929, 1431, 1551, 1563
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 3 cut(s) 196, 246, 1535
SspI AATATT 1 cut(s) 676
SspMI CTAG 4 cut(s) 17, 336, 1317, 1383
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 2 cut(s) 97, 1056
StyI CCWWGG 1 cut(s) 1347
TaaI ACNGT 2 cut(s) 539, 1329
TaiI ACGT 1 cut(s) 669
TaqI TCGA 4 cut(s) 215, 233, 467, 1331
TasI AATT 7 cut(s) 494, 507, 825, 929, 1431, 1551, 1563
TfiI GAWTC 2 cut(s) 740, 1622
Tru1I TTAA 7 cut(s) 542, 639, 650, 672, 1110, 1520, 1566
Tru9I TTAA 7 cut(s) 542, 639, 650, 672, 1110, 1520, 1566
TscAI CASTG 1 cut(s) 892
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 1 cut(s) 1610
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 9 cut(s) 915, 933, 1013, 1017, 1047, 1059, 1068, 1596, 1611
TspGWI ACGGA 3 cut(s) 155, 242, 1571
TspRI CASTG 1 cut(s) 892
Tth111I GACNNNGTC 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 1054, 1636
VspI ATTAAT 1 cut(s) 1566
XapI RAATTY 1 cut(s) 929
XceI RCATGY 2 cut(s) 752, 1427
XmnI GAANNNNTTC 1 cut(s) 385
XspI CTAG 4 cut(s) 17, 336, 1317, 1383
Zsp2I ATGCAT 1 cut(s) 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.