RchiOBHm_Chr7g0189521

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006810
Physical Location & Seq
Reverse (-)
8863116 .. 8868430
5315 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16926

Sequence Viewer

Length: 1644 bp
ATGGCGTCCGAAGCCCTAGAGGAGAAGAAGCCGGAAGAAGAAGCTCCTGTTGAGGATAAACAGGAGGTTGAAGCTGGAGAGGAGGCTAAAGAGGAGCCCGGAGAGGACGAAGAGAAAGAGGATCTGCCGCAAGTGCCCGAGAAGGCGACGGAGAACGAGGAAGAGGTAGCTGAGGAAGGCGAAGAAACTCCCAAGAAAGGTAAGCGGACTCGGAGAGCCAGCTCGAAGAAGCAGCGAGGCGGAGACTCAGCTGTGAAGAAGCCGAAGAAGGAAGCAGAGGTGGAAAAGAAGGAGAAGGAGCCGGTTACCCCGGTGAGTGAGAGGCCTACTAGGGAGAGGAAAGTAGTTGAGAGATACTCAGCTCCCGAGAGTGGAAGGTCTTCGGCCACGAAACCATTGAACATTGAGAAGGGTCGTGGAACTCAGCTCAAGGATATTCCAAACGTGGCTTTCAAGTTATCGAAGAGAAAACCGGATGACAATCTTCAATTACTGCACACAATTCTTTTTGGGAAGAAAGCAAAGTCTCACAGTTTAAAGAGAAACATTGTCCAGTTTTCAGGTTATGTGTGGGCTGAGAATGAGCAAGAAAAACAGAGGACAAGGGTAAAGGAGAAGCTTGATAAGTGTGTTAAAGAAAAGTTAATGGATTTTTGTGACGTGCTTAATATTCAAATCAATAAAGCTGGCACAAAGAAGGAAGAACTTTCTGCAAAGTTATTGGAGTTCTTGGAATCCCCACATGCTACAACTGATGTTTTGCTTGCTGAAAAGGAACAGAAAGGGCAAAAGCGTAAGAAGAAGGTTACACCAAGTAAGATTGCAGGTTCTGGAGAAGGATCACCGGAAACTCCAGCCAAGAAACAAAAGGACACACCCAGTGTTGAAAAGAATGAAGAGTCAACCAAAGATGAAGAGGATGAATTTGATGATAAAGTTGAACCTTCAGATCCAAAGGATGATCCTCTTGAAGAAGATGATGATGACAGGATGAATGAAGAAACTGATGGGGATAAATCTGATGAAGAGGAAGATGAACCAAAGGACCAGGTGTCAAGTCCAAAAAGTTCATCCAAAGATGTGAAGGAGGGCTCAAAGGTTAAAACTGGGGGGAAGTCAACACCAGCTAAGAAGAAAACCCCTGCAAAATCTGTGAAAACTCCTACAGAGTCTGAAAAGAAATCTCGTTCTACTTCAAAAAGAGGTGCAAGTGATGCTGATGGAGCTTCTGGTTCTAAAGCAAAGGGATCTGTGAAAAAACAGAAAACTGAAAAGGAAAGCCCAAAGGATAGTAAGACAAAAACCACTAGCAAAAAACAGTCGAGCAAGTCCCCAGCCAAGGTTCCAGCAAAGGATCAAGTGAAAGGCAAAACTAGCAAGAAGGCAAAGGCAGAGCCCACAAAAGAAGATGTGCATGCTGTAATTGTTGACATTCTGAAGGAAGTGGACTTCAATACTGCAACTTTATCTGATATTCTCAGGCAACTTGGTACCCACTTTGGTATTGATTTAATGCATAGAAAAGCGGAGGTGAAGGACATAATTACGGATGTAATTAATAACATGACTGATGAGGAAGAAGAGGATGAAGAAGAGGAAGCAGCTGGTGATGATTCAGAGAAAGAGGACCATGATGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

547

Amino Acids

60.81

Weight (kDa)

5.36

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 466 - 518 4.4e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 815
Acc65I GGTACC 1 cut(s) 1490
AccB1I GGYRCC 1 cut(s) 1490
AciI CCGC 4 cut(s) 128, 205, 240, 1526
AclWI GGATC 6 cut(s) 129, 847, 944, 956, 1255, 1362
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 923
AcuI CTGAAG 2 cut(s) 930, 1457
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 881
AfaI GTAC 1 cut(s) 1492
AfiI CCNNNNNNNGG 3 cut(s) 197, 371, 1339
AhdI GACNNNNNGTC 1 cut(s) 1051
AjiI CACGTC 1 cut(s) 661
AjnI CCWGG 1 cut(s) 1047
Alw26I GTCTC 2 cut(s) 237, 531
AlwI GGATC 6 cut(s) 129, 847, 944, 956, 1255, 1362
AlwNI CAGNNNCTG 2 cut(s) 830, 1172
Ama87I CYCGRG 2 cut(s) 137, 365
AoxI GGCC 2 cut(s) 323, 384
ApeKI GCWGC 2 cut(s) 232, 1601
ApoI RAATTY 1 cut(s) 923
AseI ATTAAT 1 cut(s) 1557
Asp700I GAANNNNTTC 1 cut(s) 379
Asp718I GGTACC 1 cut(s) 1490
AspS9I GGNCC 2 cut(s) 1045, 1627
AsuC2I CCSGG 2 cut(s) 99, 311
AsuHPI GGTGA 4 cut(s) 325, 834, 1543, 1619
AvaI CYCGRG 2 cut(s) 137, 365
AvaII GGWCC 2 cut(s) 1045, 1627
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 1490
BanII GRGCYC 3 cut(s) 99, 1094, 1398
BbsI GAAGAC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 244, 1613
BccI CCATC 2 cut(s) 1001, 1214
BciT130I CCWGG 1 cut(s) 1049
BcnI CCSGG 2 cut(s) 99, 311
BcoDI GTCTC 2 cut(s) 237, 531
BfaI CTAG 4 cut(s) 17, 330, 1308, 1374
BfmI CTRYAG 1 cut(s) 1164
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 3 cut(s) 128, 233, 1602
BlsI GCNGC 3 cut(s) 129, 234, 1603
Bme1390I CCNGG 3 cut(s) 99, 311, 1049
Bme18I GGWCC 2 cut(s) 1045, 1627
BmeRI GACNNNNNGTC 1 cut(s) 1051
BmeT110I CYCGRG 2 cut(s) 137, 365
BmgBI CACGTC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 1045, 1627
BmiI GGNNCC 4 cut(s) 96, 300, 1344, 1492
BmrFI CCNGG 3 cut(s) 99, 311, 1049
BmrI ACTGGG 2 cut(s) 873, 1116
BmsI GCATC 2 cut(s) 1204, 1627
BmuI ACTGGG 2 cut(s) 873, 1116
BpiI GAAGAC 1 cut(s) 372
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 3 cut(s) 96, 837, 852
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 99, 311
BsaBI GATNNNNATC 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 309, 1338
BsaWI WCCGGW 2 cut(s) 472, 844
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 371, 1339
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 3 cut(s) 553, 879, 1111
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 1049
BseDI CCNNGG 2 cut(s) 309, 1338
BseGI GGATG 7 cut(s) 481, 925, 964, 996, 1070, 1555, 1591
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 3 cut(s) 197, 371, 1339
BseMII CTCAG 6 cut(s) 162, 261, 372, 437, 567, 1492
BseNI ACTGG 3 cut(s) 553, 879, 1111
BseRI GAGGAG 3 cut(s) 35, 95, 107
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 244, 1613
BseYI CCCAGC 1 cut(s) 1333
BsgI GTGCAG 1 cut(s) 479
BshFI GGCC 2 cut(s) 325, 386
BshNI GGYRCC 1 cut(s) 1490
BsiHKCI CYCGRG 2 cut(s) 137, 365
BsiSI CCGG 6 cut(s) 32, 99, 302, 311, 473, 845
BslFI GGGAC 1 cut(s) 1315
BslI CCNNNNNNNGG 3 cut(s) 197, 371, 1339
BsmAI GTCTC 2 cut(s) 237, 531
BsmFI GGGAC 1 cut(s) 1315
BsnI GGCC 2 cut(s) 325, 386
BsoBI CYCGRG 2 cut(s) 137, 365
Bsp1286I GDGCHC 4 cut(s) 99, 138, 1094, 1398
Bsp143I GATC 6 cut(s) 121, 839, 949, 961, 1247, 1354
BspACI CCGC 4 cut(s) 128, 205, 240, 1526
BspANI GGCC 2 cut(s) 325, 386
BspCNI CTCAG 6 cut(s) 163, 260, 371, 436, 568, 1491
BspLI GGNNCC 4 cut(s) 96, 300, 1344, 1492
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 6 cut(s) 129, 847, 944, 956, 1255, 1362
BspT107I GGYRCC 1 cut(s) 1490
BsrFI RCCGGY 1 cut(s) 301
BsrI ACTGG 3 cut(s) 553, 879, 1111
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 309, 1338
BssMI GATC 6 cut(s) 121, 839, 949, 961, 1247, 1354
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 1338
Bst2UI CCWGG 1 cut(s) 1049
Bst4CI ACNGT 2 cut(s) 533, 1320
Bst6I CTCTTC 8 cut(s) 105, 156, 458, 891, 909, 1020, 1575, 1587
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1214
BstC8I GCNNGC 4 cut(s) 220, 688, 765, 1416
BstDEI CTNAG 8 cut(s) 171, 247, 358, 423, 576, 1128, 1478, 1641
BstEII GGTNACC 1 cut(s) 304
BstF5I GGATG 7 cut(s) 481, 925, 964, 996, 1070, 1555, 1591
BstKTI GATC 6 cut(s) 124, 842, 952, 964, 1250, 1357
BstMAI GTCTC 2 cut(s) 237, 531
BstMBI GATC 6 cut(s) 121, 839, 949, 961, 1247, 1354
BstMWI GCNNNNNNNGC 5 cut(s) 11, 133, 1214, 1223, 1374
BstNI CCWGG 1 cut(s) 1049
BstNSI RCATGY 2 cut(s) 746, 1418
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 97, 309, 1047
BstSFI CTRYAG 1 cut(s) 1164
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 244, 1613
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 3 cut(s) 121, 949, 1247
BstYI RGATCY 3 cut(s) 121, 949, 1247
BsuRI GGCC 2 cut(s) 325, 386
BtrI CACGTC 1 cut(s) 661
BtsCI GGATG 7 cut(s) 481, 925, 964, 996, 1070, 1555, 1591
BtsIMutI CAGTG 1 cut(s) 886
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 4 cut(s) 220, 688, 765, 1416
CaiI CAGNNNCTG 2 cut(s) 830, 1172
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 1045, 1627
CsiI ACCWGGT 1 cut(s) 1047
Csp6I GTAC 1 cut(s) 1491
CviAII CATG 4 cut(s) 743, 1415, 1564, 1631
CviQI GTAC 1 cut(s) 1491
DdeI CTNAG 8 cut(s) 171, 247, 358, 423, 576, 1128, 1478, 1641
DpnI GATC 6 cut(s) 123, 841, 951, 963, 1249, 1356
DpnII GATC 6 cut(s) 121, 839, 949, 961, 1247, 1354
DraI TTTAAA 1 cut(s) 537
DraIII CACNNNGTG 1 cut(s) 881
DriI GACNNNNNGTC 1 cut(s) 1051
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 8 cut(s) 105, 156, 458, 891, 909, 1020, 1575, 1587
Eam1105I GACNNNNNGTC 1 cut(s) 1051
EarI CTCTTC 8 cut(s) 105, 156, 458, 891, 909, 1020, 1575, 1587
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 1338
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 3 cut(s) 99, 1094, 1398
Eco47I GGWCC 2 cut(s) 1045, 1627
Eco57I CTGAAG 2 cut(s) 930, 1457
Eco88I CYCGRG 2 cut(s) 137, 365
Eco91I GGTNACC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 1047
EcoT14I CCWWGG 1 cut(s) 1338
EcoT22I ATGCAT 1 cut(s) 1518
EcoT38I GRGCYC 3 cut(s) 99, 1094, 1398
ErhI CCWWGG 1 cut(s) 1338
FaeI CATG 4 cut(s) 746, 1418, 1567, 1634
FaiI YATR 7 cut(s) 567, 744, 1416, 1518, 1541, 1565, 1632
FaqI GGGAC 1 cut(s) 1315
FatI CATG 4 cut(s) 742, 1414, 1563, 1630
Fnu4HI GCNGC 3 cut(s) 128, 233, 1602
FokI GGATG 7 cut(s) 488, 932, 971, 1003, 1057, 1562, 1598
FriOI GRGCYC 3 cut(s) 99, 1094, 1398
Fsp4HI GCNGC 3 cut(s) 128, 233, 1602
FspBI CTAG 4 cut(s) 17, 330, 1308, 1374
GluI GCNGC 3 cut(s) 128, 233, 1602
GsaI CCCAGC 1 cut(s) 1337
GsuI CTGGAG 3 cut(s) 96, 837, 852
HaeIII GGCC 2 cut(s) 325, 386
HapII CCGG 6 cut(s) 32, 99, 302, 311, 473, 845
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 746, 1418, 1567, 1634
HincII GTYRAC 3 cut(s) 903, 1119, 1429
HindII GTYRAC 3 cut(s) 903, 1119, 1429
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 6 cut(s) 208, 245, 734, 899, 1169, 1613
HpaII CCGG 6 cut(s) 32, 99, 302, 311, 473, 845
HphI GGTGA 4 cut(s) 325, 834, 1543, 1619
Hpy166II GTNNAC 4 cut(s) 903, 1119, 1429, 1447
Hpy188I TCNGA 8 cut(s) 10, 213, 949, 1021, 1174, 1437, 1471, 1618
Hpy188III TCNNGA 3 cut(s) 365, 831, 968
Hpy8I GTNNAC 4 cut(s) 903, 1119, 1429, 1447
Hpy99I CGWCG 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 533, 1320
HpyCH4IV ACGT 2 cut(s) 444, 660
HpyCH4V TGCA 8 cut(s) 496, 713, 824, 1145, 1208, 1414, 1460, 1516
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 133, 1214, 1223, 1374
HpyF3I CTNAG 8 cut(s) 171, 247, 358, 423, 576, 1128, 1478, 1641
HpySE526I ACGT 2 cut(s) 444, 660
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 746, 1418, 1567, 1634
KpnI GGTACC 1 cut(s) 1494
Kzo9I GATC 6 cut(s) 121, 839, 949, 961, 1247, 1354
LmnI GCTCC 5 cut(s) 49, 94, 298, 367, 1223
Lsp1109I GCAGC 2 cut(s) 244, 1613
LweI GCATC 2 cut(s) 1204, 1627
MabI ACCWGGT 1 cut(s) 1047
MaeI CTAG 4 cut(s) 17, 330, 1308, 1374
MaeII ACGT 2 cut(s) 444, 660
MaeIII GTNAC 3 cut(s) 304, 656, 805
MalI GATC 6 cut(s) 123, 841, 951, 963, 1249, 1356
MboI GATC 6 cut(s) 121, 839, 949, 961, 1247, 1354
MflI RGATCY 3 cut(s) 121, 949, 1247
MhlI GDGCHC 4 cut(s) 99, 138, 1094, 1398
MluCI AATT 6 cut(s) 488, 501, 923, 1422, 1542, 1554
MlyI GAGTC 4 cut(s) 202, 239, 908, 1178
Mph1103I ATGCAT 1 cut(s) 1518
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 7 cut(s) 536, 633, 644, 666, 1101, 1511, 1557
MslI CAYNNNNRTG 1 cut(s) 1635
MspA1I CMGCKG 2 cut(s) 251, 1604
MspI CCGG 6 cut(s) 32, 99, 302, 311, 473, 845
MspR9I CCNGG 3 cut(s) 99, 311, 1049
MvaI CCWGG 1 cut(s) 1049
MwoI GCNNNNNNNGC 5 cut(s) 11, 133, 1214, 1223, 1374
NciI CCSGG 2 cut(s) 99, 311
NdeII GATC 6 cut(s) 121, 839, 949, 961, 1247, 1354
NlaIII CATG 4 cut(s) 746, 1418, 1567, 1634
NlaIV GGNNCC 4 cut(s) 96, 300, 1344, 1492
NmuCI GTSAC 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 1518
NspI RCATGY 2 cut(s) 746, 1418
PaeI GCATGC 1 cut(s) 1418
PceI AGGCCT 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 734, 1613
PkrI GCNGC 3 cut(s) 129, 234, 1603
PleI GAGTC 4 cut(s) 202, 239, 907, 1177
PpsI GAGTC 4 cut(s) 202, 239, 907, 1177
PshBI ATTAAT 1 cut(s) 1557
Psp6I CCWGG 1 cut(s) 1047
PspEI GGTNACC 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 1333
PspGI CCWGG 1 cut(s) 1047
PspN4I GGNNCC 4 cut(s) 96, 300, 1344, 1492
PspPI GGNCC 2 cut(s) 1045, 1627
PstNI CAGNNNCTG 2 cut(s) 830, 1172
PsuI RGATCY 3 cut(s) 121, 949, 1247
PvuII CAGCTG 2 cut(s) 251, 1604
RsaI GTAC 1 cut(s) 1492
RsaNI GTAC 1 cut(s) 1491
RseI CAYNNNNRTG 1 cut(s) 1635
SaqAI TTAA 7 cut(s) 536, 633, 644, 666, 1101, 1511, 1557
SatI GCNGC 3 cut(s) 128, 233, 1602
Sau3AI GATC 6 cut(s) 121, 839, 949, 961, 1247, 1354
Sau96I GGNCC 2 cut(s) 1045, 1627
SchI GAGTC 4 cut(s) 202, 239, 908, 1178
ScrFI CCNGG 3 cut(s) 99, 311, 1049
SduI GDGCHC 4 cut(s) 99, 138, 1094, 1398
SexAI ACCWGGT 1 cut(s) 1047
SfaNI GCATC 2 cut(s) 1204, 1627
SfcI CTRYAG 1 cut(s) 1164
SinI GGWCC 2 cut(s) 1045, 1627
SmiMI CAYNNNNRTG 1 cut(s) 1635
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SphI GCATGC 1 cut(s) 1418
Sse9I AATT 6 cut(s) 488, 501, 923, 1422, 1542, 1554
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 4 cut(s) 128, 205, 240, 1526
SspI AATATT 1 cut(s) 670
SspMI CTAG 4 cut(s) 17, 330, 1308, 1374
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 3 cut(s) 97, 309, 1047
StyI CCWWGG 1 cut(s) 1338
TaaI ACNGT 2 cut(s) 533, 1320
TaiI ACGT 2 cut(s) 447, 663
TaqI TCGA 3 cut(s) 224, 461, 1322
TasI AATT 6 cut(s) 488, 501, 923, 1422, 1542, 1554
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 2 cut(s) 734, 1613
Tru1I TTAA 7 cut(s) 536, 633, 644, 666, 1101, 1511, 1557
Tru9I TTAA 7 cut(s) 536, 633, 644, 666, 1101, 1511, 1557
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 2 cut(s) 232, 1601
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 9 cut(s) 909, 927, 936, 1007, 1011, 1038, 1050, 1059, 1602
TspGWI ACGGA 2 cut(s) 164, 1562
TspRI CASTG 1 cut(s) 886
VpaK11BI GGWCC 2 cut(s) 1045, 1627
VspI ATTAAT 1 cut(s) 1557
XapI RAATTY 1 cut(s) 923
XceI RCATGY 2 cut(s) 746, 1418
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 4 cut(s) 17, 330, 1308, 1374
Zsp2I ATGCAT 1 cut(s) 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.