Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006810

Physical Location & Seq

Genomic Coordinates Forward (+)

25444575 .. 25448255

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGCGACTGAAACCCTAGATGAGAAGACACCGGAAGTGAATTCTCCGGCGAAGGAGGAAATTGATGTTGTTCCGAAGGAGGAGAAGGAGGTAGAGAAAGAAAAAGTGGATTCGCCGAGAATTGGCGAAGCGGAGGAGGAGAAGAAGGAAGATGAAGAAGAGGGTGAAGCGAAAGAAGGAGAATTGGGTGAGAAAGATAAAGAAGACGATGTAGAAAGTGAGGAGGAAGAAGAAGAAGAAGAAGGAAGTGGAAGTAAGAAATCGTCGGAGAAGGAAACGGTGACTCCGACTAGTGAGAGACCAACGAGGGAGAGAAAGAAGGTTGAGCGTTTCTCGTTGTCGACTCCTATGCGGGCTCCACCGAGCAAGTCCGTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAATGTGGCTCATAAACTATCGAAGAGAAAAGCTGATGACAACCTGATGTTACTACACACCATTCTTTTTGGGAAGAAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGGCTTTGCCTGGTCAGAGAAAGAGGAGGAGAAGCAGAGAGCACGAATAAAAGAGAAGATTGACAAATGCGTAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATCCCTATAAGCAGAAGTAACGTGAAAAAAGAAGAACTAGCTGTCAAAGTGCTTGAATTTTTGGAATCTCCCAAGGAAACTAGAGATGTTATAATTGCTGATCAAGAAAAGGCGAAAAAGCGCAAGAGTACACCAAAAAGGGGGAAATCTGGAGAATCTTCGGACACCCCTGCCAAGAGGAAAAGGCAAACTAAAAAGCGAGATCTTCCATCTGACACGGAAGAAGGCAAGGATGAGGGAGATGCTGACTCTGAAGGAACTAATGATCCTCATGAAGAAGATGATGCAGCGCCAGAGGAAGAAAGTGACCATGAAAAGACTGACACTGACGATGAGAAAGATGAAGTAGAGGTTGAGAAACCATCCAAGAAGAAAAGCTCATCGAAAAAGACTGTAGAGGAGAGTTCAGGGTCCAAAGGTAAGGATAAGCAACCTTCTGCCAAAGGTTCTGCAAGATCTGGGGAAAAGTCCTCCAAACAAATTGCTAAGTCAACTTCATCCCCAGCTAAGAAGCAAAAAGTTGATCACGTTGAGTCTTCTAAAGAGAAAAGCAAGAAACAGCCGAGTAAGCCACAGGCTAAGGGATCTAAAGAGAAAGGAAAAGCCACTAAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAAAAGAGATGCTTGAAGTGGTGTCCAAAATTCTGAAGGAAGTAGACTTCAATACGGCAACACTATCAGATATTCTGCAGAAGCTAAGTGACCATTTTGGTGTCGAGCTGTCGCATAGAAAACCAGAGGTGAAGGATGTTATCACAGAGGCCATAAATGCAATGACTGATGATGAAGAAGAAGATGAAGAGGAAGAAGCTGAGGCAGGAAGTGACAAAGAAAAGGAAGAAGTAAAAGGAGAGGAAGAAGAGGAAAAAGCTGAGGCTGAAAGTGACAAAGAGAAGGAAAAAGAAGAGCCAAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C

Protein Analysis

530

Amino Acids

59.43

Weight (kDa)

5.13

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	427 - 479	2.9e-13	DEK C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48710 AT5G63550 AT5G63550
fragaria_vesca	FvH4_5g08751 FvH4_5g08751 FvH4_5g08751
malus_domestica	MD06G1137600.v1.1 MD14G1152400.v1.1
prunus_persica	Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1
pyrus_communis	pycom06g12880 pycom14g12680
rosa_chinensis	RchiOBHm_Chr7g0189521
rosa_laevigata	RLG00000004604
rosa_multiflora	Rmu_sc0001924.1_g000009
rosa_roxburghii	Rroxscaffold_3G00265330 Rroxscaffold_6G00405120
rosa_rugosa	Rorug06G0498600 Rorug06G0498700
rosa_samantha	Rh7AG103600 Rh7BG106100 Rh7CG108300 Rh7DG105700
rosa_wichuraiana	Rw7G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AccI	GTMKAC	2 cut(s)	341, 1329
AciI	CCGC	2 cut(s)	131, 352
AclWI	GGATC	2 cut(s)	905, 1237
AcsI	RAATTY	4 cut(s)	40, 411, 701, 1314
AcuI	CTGAAG	2 cut(s)	918, 1340
AfaI	GTAC	1 cut(s)	775
AfiI	CCNNNNNNNGG	2 cut(s)	122, 785
AgsI	TTSAA	5 cut(s)	378, 383, 701, 1301, 1336
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	545
AloI	GAACNNNNNNTCC	2 cut(s)	895, 927
AluBI	AGCT	8 cut(s)	449, 686, 1023, 1151, 1369, 1393, 1484, 1544
AluI	AGCT	8 cut(s)	449, 686, 1023, 1151, 1369, 1393, 1484, 1544
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	905, 1237
AoxI	GGCC	1 cut(s)	1434
ApeKI	GCWGC	1 cut(s)	932
ApoI	RAATTY	4 cut(s)	40, 411, 701, 1314
AspLEI	GCGC	2 cut(s)	768, 937
AspS9I	GGNCC	1 cut(s)	1056
AsuHPI	GGTGA	4 cut(s)	176, 200, 292, 1426
AvaII	GGWCC	1 cut(s)	1056
BanII	GRGCYC	2 cut(s)	358, 1281
BbsI	GAAGAC	3 cut(s)	32, 210, 1173
Bbv12I	GWGCWC	1 cut(s)	580
BbvCI	CCTCAGC	2 cut(s)	1485, 1545
BbvI	GCAGC	1 cut(s)	944
BccI	CCATC	3 cut(s)	502, 862, 1015
BceAI	ACGGC	1 cut(s)	1356
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	547
BclI	TGATCA	2 cut(s)	745, 1168
BcoDI	GTCTC	1 cut(s)	292
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	4 cut(s)	17, 291, 683, 726
BfmI	CTRYAG	2 cut(s)	1038, 1361
BfoI	RGCGCY	1 cut(s)	938
BglII	AGATCT	2 cut(s)	847, 1100
BisI	GCNGC	1 cut(s)	933
BlsI	GCNGC	1 cut(s)	934
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	1056
BmgT120I	GGNCC	1 cut(s)	1056
BmiI	GGNNCC	2 cut(s)	357, 1057
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	3 cut(s)	877, 919, 1284
BpiI	GAAGAC	3 cut(s)	32, 210, 1173
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	1 cut(s)	816
Bpu10I	CCTNAGC	3 cut(s)	1224, 1485, 1545
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 785
Bse3DI	GCAATG	1 cut(s)	1452
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	4 cut(s)	883, 1007, 1142, 1426
BseLI	CCNNNNNNNGG	2 cut(s)	122, 785
BseMI	GCAATG	1 cut(s)	1452
BseMII	CTCAG	3 cut(s)	418, 1476, 1536
BseRI	GAGGAG	7 cut(s)	95, 149, 152, 236, 575, 578, 1058
BseXI	GCAGC	1 cut(s)	944
BseYI	CCCAGC	1 cut(s)	1147
BshFI	GGCC	1 cut(s)	1436
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	2 cut(s)	32, 47
BslI	CCNNNNNNNGG	2 cut(s)	122, 785
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	1436
Bso31I	GGTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	3 cut(s)	358, 580, 1281
Bsp143I	GATC	6 cut(s)	745, 847, 910, 1100, 1168, 1229
BspACI	CCGC	2 cut(s)	131, 352
BspANI	GGCC	1 cut(s)	1436
BspCNI	CTCAG	3 cut(s)	417, 1477, 1537
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	2 cut(s)	357, 1057
BspMAI	CTGCAG	1 cut(s)	1365
BspPI	GGATC	2 cut(s)	905, 1237
BspQI	GCTCTTC	1 cut(s)	1572
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	1452
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	6 cut(s)	745, 847, 910, 1100, 1168, 1229
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	2 cut(s)	280, 1039
Bst6I	CTCTTC	5 cut(s)	153, 434, 1467, 1527, 1572
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	8 cut(s)	404, 1131, 1152, 1224, 1254, 1370, 1485, 1545
BstF5I	GGATG	4 cut(s)	883, 1007, 1142, 1426
BstH2I	RGCGCY	1 cut(s)	938
BstHHI	GCGC	2 cut(s)	768, 937
BstKTI	GATC	6 cut(s)	748, 850, 913, 1103, 1171, 1232
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	6 cut(s)	745, 847, 910, 1100, 1168, 1229
BstMWI	GCNNNNNNNGC	2 cut(s)	1213, 1442
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	2 cut(s)	1038, 1361
BstV1I	GCAGC	1 cut(s)	944
BstV2I	GAAGAC	3 cut(s)	32, 210, 1173
BstX2I	RGATCY	3 cut(s)	847, 1100, 1229
BstYI	RGATCY	3 cut(s)	847, 1100, 1229
BsuRI	GGCC	1 cut(s)	1436
BtsCI	GGATG	4 cut(s)	883, 1007, 1142, 1426
BtsIMutI	CAGTG	1 cut(s)	969
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	2 cut(s)	768, 937
Cfr13I	GGNCC	1 cut(s)	1056
Csp6I	GTAC	1 cut(s)	774
CviAII	CATG	2 cut(s)	917, 956
CviQI	GTAC	1 cut(s)	774
DdeI	CTNAG	8 cut(s)	404, 1131, 1152, 1224, 1254, 1370, 1485, 1545
DpnI	GATC	6 cut(s)	747, 849, 912, 1102, 1170, 1231
DpnII	GATC	6 cut(s)	745, 847, 910, 1100, 1168, 1229
Eam1104I	CTCTTC	5 cut(s)	153, 434, 1467, 1527, 1572
EarI	CTCTTC	5 cut(s)	153, 434, 1467, 1527, 1572
Eco130I	CCWWGG	1 cut(s)	717
Eco24I	GRGCYC	2 cut(s)	358, 1281
Eco31I	GGTCTC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	1056
Eco57I	CTGAAG	2 cut(s)	918, 1340
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	2 cut(s)	358, 1281
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	2 cut(s)	920, 959
FaiI	YATR	8 cut(s)	350, 429, 653, 737, 918, 957, 1401, 1439
FalI	AAGNNNNNCTT	2 cut(s)	1281, 1313
FatI	CATG	2 cut(s)	916, 955
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	2 cut(s)	745, 1168
FblI	GTMKAC	2 cut(s)	341, 1329
Fnu4HI	GCNGC	1 cut(s)	933
FokI	GGATG	4 cut(s)	890, 994, 1129, 1433
FriOI	GRGCYC	2 cut(s)	358, 1281
Fsp4HI	GCNGC	1 cut(s)	933
FspBI	CTAG	4 cut(s)	17, 291, 683, 726
GlaI	GCGC	2 cut(s)	767, 936
GluI	GCNGC	1 cut(s)	933
GsaI	CCCAGC	1 cut(s)	1151
GsuI	CTGGAG	1 cut(s)	816
HaeII	RGCGCY	1 cut(s)	938
HaeIII	GGCC	1 cut(s)	1436
HapII	CCGG	2 cut(s)	32, 47
HhaI	GCGC	2 cut(s)	768, 937
Hin1II	CATG	2 cut(s)	920, 959
Hin6I	GCGC	2 cut(s)	766, 935
HinP1I	GCGC	2 cut(s)	766, 935
HincII	GTYRAC	2 cut(s)	342, 1137
HindII	GTYRAC	2 cut(s)	342, 1137
HinfI	GANTC	7 cut(s)	110, 283, 343, 710, 800, 893, 1178
HpaII	CCGG	2 cut(s)	32, 47
HphI	GGTGA	4 cut(s)	176, 200, 292, 1426
Hpy166II	GTNNAC	4 cut(s)	342, 776, 1137, 1330
Hpy188III	TCNNGA	3 cut(s)	749, 795, 917
Hpy8I	GTNNAC	4 cut(s)	342, 776, 1137, 1330
Hpy99I	CGWCG	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	280, 1039
HpyCH4IV	ACGT	2 cut(s)	666, 1173
HpyCH4V	TGCA	4 cut(s)	932, 1097, 1363, 1445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1213, 1442
HpyF3I	CTNAG	8 cut(s)	404, 1131, 1152, 1224, 1254, 1370, 1485, 1545
HpySE526I	ACGT	2 cut(s)	666, 1173
Hsp92II	CATG	2 cut(s)	920, 959
HspAI	GCGC	2 cut(s)	766, 935
Ksp22I	TGATCA	2 cut(s)	745, 1168
Kzo9I	GATC	6 cut(s)	745, 847, 910, 1100, 1168, 1229
LguI	GCTCTTC	1 cut(s)	1572
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	944
LweI	GCATC	3 cut(s)	877, 919, 1284
MaeI	CTAG	4 cut(s)	17, 291, 683, 726
MaeII	ACGT	2 cut(s)	666, 1173
MaeIII	GTNAC	7 cut(s)	280, 465, 662, 950, 1373, 1496, 1556
MalI	GATC	6 cut(s)	747, 849, 912, 1102, 1170, 1231
MboI	GATC	6 cut(s)	745, 847, 910, 1100, 1168, 1229
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	3 cut(s)	847, 1100, 1229
MhlI	GDGCHC	3 cut(s)	358, 580, 1281
MlyI	GAGTC	4 cut(s)	277, 337, 887, 1187
MmeI	TCCRAC	2 cut(s)	246, 311
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	1383
MspI	CCGG	2 cut(s)	32, 47
MspR9I	CCNGG	1 cut(s)	547
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	2 cut(s)	1213, 1442
NdeII	GATC	6 cut(s)	745, 847, 910, 1100, 1168, 1229
NlaIII	CATG	2 cut(s)	920, 959
NlaIV	GGNNCC	2 cut(s)	357, 1057
NmeAIII	GCCGAG	2 cut(s)	141, 1233
NmuCI	GTSAC	5 cut(s)	280, 950, 1373, 1496, 1556
PagI	TCATGA	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	1572
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	110, 710, 800
PkrI	GCNGC	1 cut(s)	934
PleI	GAGTC	4 cut(s)	277, 337, 887, 1186
PpsI	GAGTC	4 cut(s)	277, 337, 887, 1186
PsiI	TTATAA	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	1147
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	357, 1057
PspPI	GGNCC	1 cut(s)	1056
PstI	CTGCAG	1 cut(s)	1365
PsuI	RGATCY	3 cut(s)	847, 1100, 1229
RsaI	GTAC	1 cut(s)	775
RsaNI	GTAC	1 cut(s)	774
RseI	CAYNNNNRTG	1 cut(s)	1383
SalI	GTCGAC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	1572
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	1 cut(s)	933
Sau3AI	GATC	6 cut(s)	745, 847, 910, 1100, 1168, 1229
Sau96I	GGNCC	1 cut(s)	1056
SchI	GAGTC	4 cut(s)	277, 337, 887, 1187
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	3 cut(s)	358, 580, 1281
SfaNI	GCATC	3 cut(s)	877, 919, 1284
SfcI	CTRYAG	2 cut(s)	1038, 1361
SinI	GGWCC	1 cut(s)	1056
SmiMI	CAYNNNNRTG	1 cut(s)	1383
SpeI	ACTAGT	1 cut(s)	290
SsiI	CCGC	2 cut(s)	131, 352
SspMI	CTAG	4 cut(s)	17, 291, 683, 726
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	2 cut(s)	280, 1039
TaiI	ACGT	2 cut(s)	669, 1176
TaqI	TCGA	4 cut(s)	341, 437, 1028, 1389
TatI	WGTACW	1 cut(s)	773
TfiI	GAWTC	3 cut(s)	110, 710, 800
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	976
TseFI	GTSAC	5 cut(s)	280, 950, 1373, 1496, 1556
TseI	GCWGC	1 cut(s)	932
Tsp45I	GTSAC	5 cut(s)	280, 950, 1373, 1496, 1556
TspDTI	ATGAA	7 cut(s)	168, 933, 972, 1002, 1131, 1473, 1485
TspGWI	ACGGA	2 cut(s)	361, 878
TspRI	CASTG	1 cut(s)	976
VpaK11BI	GGWCC	1 cut(s)	1056
XapI	RAATTY	4 cut(s)	40, 411, 701, 1314
XmiI	GTMKAC	2 cut(s)	341, 1329
XspI	CTAG	4 cut(s)	17, 291, 683, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.