Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006810

Physical Location & Seq

Genomic Coordinates Reverse (-)

8342028 .. 8347288

Gene Structure 5261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCGTCCGAAGCCCTAGAGGAGAAGAAGCCGGAAGAAGAAGCTCCTGTTGAGGATAAACAGGAGGTTGAAGCTGAAGAGGAGGCTAAAGAGGAGCCCGGAGAGGACGAAGAGAAAGAGGATCTGCCGGAAGTGCCCGAGAAGGCGACGGAGAACGAGGAAGAGGTAGCTGAGGAAGGCGAAGAAACTCCCAAGAAAGGTAAGCGGACTCGGAGAGCCAGCTCGAAGAAGCAGCGAGGCGGAGACTCAGCTGTGAAGAAGCCGAAGAAGGAAGCAGAGGTGGAAAAGAAGGAGAAGGAGCCGGTTACTCCGGTGAGTGAGAGGCCTACTAGGGAGAGGAAAGTAGTTGAGAGATACTCAGCTCCCGAGAGTGGAAGGTCTTCGGCGACGAAACCATTGAACATTGAGAAGGGTCGTGGAACTCAGCTCAAGGATATTCCAAACGTGGCTTTCAAGTTATCGAAGAGAAAACCGGATGACAATCTTCAATTACTGCACACAATTCTTTTTGGGAAGAAAGCAAAGTCTCACAGTTTAAAGAGAAACATTGTCCAGTTTTCAGGTTATGTGTGGGCTGAGAATGAGCAAGAAAAACAGAGGACAAGGGTAAAGGAGAAGCTTGATAAGTGTGTTAAAGAAAAGTTAATGGATTTTTGTGACGTGCTTAATATTCAAATCAATAAAGCTGGCACAAAGAAGGAAGAACTTTCTGCAAAGTTATTGGAGTTCTTGGAATCCCCACATGCTACAACTGATGTTTTGCTTGCTGAAAAGGAACAGAAAGGGCAAAAGCGTAAGAAGAAGGTTACACCAAGTAAGATTGCAGGTTCTGGAGAAGGATCACCGGAAACTCCAGCCAAGAAACAAAAGGACACACCCAGTGTTGAAAAGAATGAAGAGTCAACCAAAGATGAAGAGGACGAATTTGATGATAAAGTTGAACCTTCAAATCCAAAGGATGATCCTCTTGAAGAAGATGATGATGACAGGATGAATGAAGAAACTGATCATGGGGATAAATCTGATGAAGAGGAAGATGAACCAAAGGACCAGGTGTCAAGTCCAAAAAGTTCATCCAAAGATGTGAAGGAGGGCTCAAAGGTTAAAACTGGGGGGAAGTCAACACCAGCTAAGAAGAAAACCCCTGCAAAATCTGTAAAAACTCCTACAGAGTCTGAAAAGAAATCTCGTTCTACTTCAAAAAGAGGTGCAAGTGATGCTGATGGAGCTTCTGGTTCTAAAGCAAAGGGATCTGTGAAAAAACAGAAAACTGAAAAGGAAAGCCCAAAGGATAGTAAGACAAAAACCACTAGCAAAAAACAGTCGAGCAAGTCCCCAGCCAAGGTTCCAGCAAAGGATCAAGGTGATTTGCTTTATGTTTGTATAATTCAGTATCTAAGATTTTGCTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C

Protein Analysis

471

Amino Acids

52.55

Weight (kDa)

6.36

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48710 AT5G63550 AT5G63550
fragaria_vesca	FvH4_5g08751 FvH4_5g08751 FvH4_5g08751
malus_domestica	MD06G1137600.v1.1 MD14G1152400.v1.1
prunus_persica	Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1
pyrus_communis	pycom06g12880 pycom14g12680
rosa_chinensis	RchiOBHm_Chr7g0189521
rosa_laevigata	RLG00000004604
rosa_multiflora	Rmu_sc0001924.1_g000009
rosa_roxburghii	Rroxscaffold_3G00265330 Rroxscaffold_6G00405120
rosa_rugosa	Rorug06G0498600 Rorug06G0498700
rosa_samantha	Rh7AG103600 Rh7BG106100 Rh7CG108300 Rh7DG105700
rosa_wichuraiana	Rw7G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	815
AciI	CCGC	2 cut(s)	205, 240
AclWI	GGATC	5 cut(s)	129, 847, 956, 1258, 1365
AcsI	RAATTY	1 cut(s)	923
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	881
AfiI	CCNNNNNNNGG	3 cut(s)	197, 371, 1342
AhdI	GACNNNNNGTC	1 cut(s)	1054
AjiI	CACGTC	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	1050
Alw26I	GTCTC	2 cut(s)	237, 531
AlwI	GGATC	5 cut(s)	129, 847, 956, 1258, 1365
AlwNI	CAGNNNCTG	2 cut(s)	830, 1175
Ama87I	CYCGRG	2 cut(s)	137, 365
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	923
Asp700I	GAANNNNTTC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	1048
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	3 cut(s)	325, 834, 1376
AvaI	CYCGRG	2 cut(s)	137, 365
AvaII	GGWCC	1 cut(s)	1048
BaeGI	GKGCMC	1 cut(s)	138
BanII	GRGCYC	2 cut(s)	99, 1097
BbsI	GAAGAC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	1217
BciT130I	CCWGG	1 cut(s)	1052
BclI	TGATCA	1 cut(s)	1006
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	237, 531
BfaI	CTAG	3 cut(s)	17, 330, 1311
BfmI	CTRYAG	1 cut(s)	1167
BfuAI	ACCTGC	1 cut(s)	815
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	99, 1052
Bme18I	GGWCC	1 cut(s)	1048
BmeRI	GACNNNNNGTC	1 cut(s)	1054
BmeT110I	CYCGRG	2 cut(s)	137, 365
BmgBI	CACGTC	1 cut(s)	661
BmgT120I	GGNCC	1 cut(s)	1048
BmiI	GGNNCC	3 cut(s)	96, 300, 1347
BmrFI	CCNGG	2 cut(s)	99, 1052
BmrI	ACTGGG	2 cut(s)	873, 1119
BmsI	GCATC	1 cut(s)	1207
BmuI	ACTGGG	2 cut(s)	873, 1119
BpiI	GAAGAC	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	2 cut(s)	837, 852
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	1341
BsaWI	WCCGGW	3 cut(s)	310, 472, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 371, 1342
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	3 cut(s)	553, 879, 1114
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	1052
BseDI	CCNNGG	1 cut(s)	1341
BseGI	GGATG	4 cut(s)	481, 964, 996, 1073
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	3 cut(s)	197, 371, 1342
BseMII	CTCAG	5 cut(s)	162, 261, 372, 437, 567
BseNI	ACTGG	3 cut(s)	553, 879, 1114
BseRI	GAGGAG	3 cut(s)	35, 95, 107
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	1336
BsgI	GTGCAG	1 cut(s)	479
BshFI	GGCC	1 cut(s)	325
BsiHKCI	CYCGRG	2 cut(s)	137, 365
BsiSI	CCGG	7 cut(s)	32, 99, 128, 302, 311, 473, 845
BslFI	GGGAC	1 cut(s)	1318
BslI	CCNNNNNNNGG	3 cut(s)	197, 371, 1342
BsmAI	GTCTC	2 cut(s)	237, 531
BsmFI	GGGAC	1 cut(s)	1318
BsnI	GGCC	1 cut(s)	325
BsoBI	CYCGRG	2 cut(s)	137, 365
Bsp1286I	GDGCHC	3 cut(s)	99, 138, 1097
Bsp143I	GATC	6 cut(s)	121, 839, 961, 1006, 1250, 1357
BspACI	CCGC	2 cut(s)	205, 240
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	5 cut(s)	163, 260, 371, 436, 568
BspHI	TCATGA	1 cut(s)	1412
BspLI	GGNNCC	3 cut(s)	96, 300, 1347
BspMI	ACCTGC	1 cut(s)	815
BspPI	GGATC	5 cut(s)	129, 847, 956, 1258, 1365
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	3 cut(s)	553, 879, 1114
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	1341
BssMI	GATC	6 cut(s)	121, 839, 961, 1006, 1250, 1357
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	1341
Bst2UI	CCWGG	1 cut(s)	1052
Bst4CI	ACNGT	2 cut(s)	533, 1323
Bst6I	CTCTTC	7 cut(s)	72, 105, 156, 458, 891, 909, 1023
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	1217
BstC8I	GCNNGC	3 cut(s)	220, 688, 765
BstDEI	CTNAG	7 cut(s)	171, 247, 358, 423, 576, 1131, 1397
BstF5I	GGATG	4 cut(s)	481, 964, 996, 1073
BstKTI	GATC	6 cut(s)	124, 842, 964, 1009, 1253, 1360
BstMAI	GTCTC	2 cut(s)	237, 531
BstMBI	GATC	6 cut(s)	121, 839, 961, 1006, 1250, 1357
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 133, 1217, 1226
BstNI	CCWGG	1 cut(s)	1052
BstNSI	RCATGY	1 cut(s)	746
BstSCI	CCNGG	2 cut(s)	97, 1050
BstSFI	CTRYAG	1 cut(s)	1167
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	121, 1250
BstYI	RGATCY	2 cut(s)	121, 1250
BsuRI	GGCC	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	661
BtsCI	GGATG	4 cut(s)	481, 964, 996, 1073
BtsIMutI	CAGTG	1 cut(s)	886
BveI	ACCTGC	1 cut(s)	815
Cac8I	GCNNGC	3 cut(s)	220, 688, 765
CaiI	CAGNNNCTG	2 cut(s)	830, 1175
CciI	TCATGA	1 cut(s)	1412
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	1048
CsiI	ACCWGGT	1 cut(s)	1050
CviAII	CATG	3 cut(s)	743, 1010, 1413
DdeI	CTNAG	7 cut(s)	171, 247, 358, 423, 576, 1131, 1397
DpnI	GATC	6 cut(s)	123, 841, 963, 1008, 1252, 1359
DpnII	GATC	6 cut(s)	121, 839, 961, 1006, 1250, 1357
DraI	TTTAAA	1 cut(s)	537
DraIII	CACNNNGTG	1 cut(s)	881
DriI	GACNNNNNGTC	1 cut(s)	1054
Eam1104I	CTCTTC	7 cut(s)	72, 105, 156, 458, 891, 909, 1023
Eam1105I	GACNNNNNGTC	1 cut(s)	1054
EarI	CTCTTC	7 cut(s)	72, 105, 156, 458, 891, 909, 1023
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	1341
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	99, 1097
Eco47I	GGWCC	1 cut(s)	1048
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	137, 365
EcoRII	CCWGG	1 cut(s)	1050
EcoT14I	CCWWGG	1 cut(s)	1341
EcoT38I	GRGCYC	2 cut(s)	99, 1097
ErhI	CCWWGG	1 cut(s)	1341
FaeI	CATG	3 cut(s)	746, 1013, 1416
FaiI	YATR	6 cut(s)	567, 744, 1011, 1377, 1385, 1414
FaqI	GGGAC	1 cut(s)	1318
FatI	CATG	3 cut(s)	742, 1009, 1412
FbaI	TGATCA	1 cut(s)	1006
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	4 cut(s)	488, 971, 1003, 1060
FriOI	GRGCYC	2 cut(s)	99, 1097
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	3 cut(s)	17, 330, 1311
GluI	GCNGC	1 cut(s)	233
GsaI	CCCAGC	1 cut(s)	1340
GsuI	CTGGAG	2 cut(s)	837, 852
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	7 cut(s)	32, 99, 128, 302, 311, 473, 845
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	746, 1013, 1416
HincII	GTYRAC	2 cut(s)	903, 1122
HindII	GTYRAC	2 cut(s)	903, 1122
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	5 cut(s)	208, 245, 734, 899, 1172
HpaII	CCGG	7 cut(s)	32, 99, 128, 302, 311, 473, 845
HphI	GGTGA	3 cut(s)	325, 834, 1376
Hpy166II	GTNNAC	2 cut(s)	903, 1122
Hpy188I	TCNGA	4 cut(s)	10, 213, 1024, 1177
Hpy188III	TCNNGA	4 cut(s)	365, 831, 968, 1413
Hpy8I	GTNNAC	2 cut(s)	903, 1122
Hpy99I	CGWCG	2 cut(s)	151, 391
HpyCH4III	ACNGT	2 cut(s)	533, 1323
HpyCH4IV	ACGT	2 cut(s)	444, 660
HpyCH4V	TGCA	5 cut(s)	496, 713, 824, 1148, 1211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 133, 1217, 1226
HpyF3I	CTNAG	7 cut(s)	171, 247, 358, 423, 576, 1131, 1397
HpySE526I	ACGT	2 cut(s)	444, 660
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	746, 1013, 1416
Ksp22I	TGATCA	1 cut(s)	1006
Kzo9I	GATC	6 cut(s)	121, 839, 961, 1006, 1250, 1357
LmnI	GCTCC	5 cut(s)	49, 94, 298, 367, 1226
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	1207
MabI	ACCWGGT	1 cut(s)	1050
MaeI	CTAG	3 cut(s)	17, 330, 1311
MaeII	ACGT	2 cut(s)	444, 660
MaeIII	GTNAC	3 cut(s)	304, 656, 805
MalI	GATC	6 cut(s)	123, 841, 963, 1008, 1252, 1359
MboI	GATC	6 cut(s)	121, 839, 961, 1006, 1250, 1357
MflI	RGATCY	2 cut(s)	121, 1250
MhlI	GDGCHC	3 cut(s)	99, 138, 1097
MluCI	AATT	4 cut(s)	488, 501, 923, 1386
MlyI	GAGTC	4 cut(s)	202, 239, 908, 1181
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	5 cut(s)	536, 633, 644, 666, 1104
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	7 cut(s)	32, 99, 128, 302, 311, 473, 845
MspR9I	CCNGG	2 cut(s)	99, 1052
MvaI	CCWGG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	4 cut(s)	11, 133, 1217, 1226
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	6 cut(s)	121, 839, 961, 1006, 1250, 1357
NlaIII	CATG	3 cut(s)	746, 1013, 1416
NlaIV	GGNNCC	3 cut(s)	96, 300, 1347
NmuCI	GTSAC	1 cut(s)	656
NspI	RCATGY	1 cut(s)	746
PagI	TCATGA	1 cut(s)	1412
PceI	AGGCCT	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	734
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	4 cut(s)	202, 239, 907, 1180
PpsI	GAGTC	4 cut(s)	202, 239, 907, 1180
Psp6I	CCWGG	1 cut(s)	1050
PspFI	CCCAGC	1 cut(s)	1336
PspGI	CCWGG	1 cut(s)	1050
PspN4I	GGNNCC	3 cut(s)	96, 300, 1347
PspPI	GGNCC	1 cut(s)	1048
PstNI	CAGNNNCTG	2 cut(s)	830, 1175
PsuI	RGATCY	2 cut(s)	121, 1250
PvuII	CAGCTG	1 cut(s)	251
SaqAI	TTAA	5 cut(s)	536, 633, 644, 666, 1104
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	6 cut(s)	121, 839, 961, 1006, 1250, 1357
Sau96I	GGNCC	1 cut(s)	1048
SchI	GAGTC	4 cut(s)	202, 239, 908, 1181
ScrFI	CCNGG	2 cut(s)	99, 1052
SduI	GDGCHC	3 cut(s)	99, 138, 1097
SexAI	ACCWGGT	1 cut(s)	1050
SfaNI	GCATC	1 cut(s)	1207
SfcI	CTRYAG	1 cut(s)	1167
SinI	GGWCC	1 cut(s)	1048
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	4 cut(s)	488, 501, 923, 1386
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	205, 240
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	3 cut(s)	17, 330, 1311
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	97, 1050
StyI	CCWWGG	1 cut(s)	1341
TaaI	ACNGT	2 cut(s)	533, 1323
TaiI	ACGT	2 cut(s)	447, 663
TaqI	TCGA	3 cut(s)	224, 461, 1325
TasI	AATT	4 cut(s)	488, 501, 923, 1386
TfiI	GAWTC	1 cut(s)	734
Tru1I	TTAA	5 cut(s)	536, 633, 644, 666, 1104
Tru9I	TTAA	5 cut(s)	536, 633, 644, 666, 1104
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	8 cut(s)	909, 927, 1007, 1011, 1041, 1053, 1062, 1401
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	1048
XapI	RAATTY	1 cut(s)	923
XceI	RCATGY	1 cut(s)	746
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	3 cut(s)	17, 330, 1311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.