Rh7BG106100

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006810
Physical Location & Seq
Reverse (-)
7995654 .. 8000788
5135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG106100.1

Sequence Viewer

Length: 1638 bp
ATGGCGTCCGAAGCCCTAGAGGAGAAGAAGCCGGAAGAAGAAGCTCCTGTTGAGGATAAACAGGAGGTTGAAGCTAAAGAGGAGGCCGGAGAGGACGAAGAGAAAGAGGATCTGCCGGAAGTGCCCGAGAAGGCGACGGAGAACGAGGAAGGCGAAGAAACTCCCAAGAAAGGTAAGCGGACTCGGAGAGCCAGCACGAAGAGCCAGACTGAGTCGAAGAAGCAGCGAGGCGGAGACTCAGCTGTGAAGAAGCCGAAGAAGGAAGCCGAGGTGGAAAAGAAGGAGAAGGAGCCGGTTACTCCGGTGAGTGAGAGGCCTACTAGGGAGAGGAAAGTAGTTGAGAGATACTCAGCTCCCGAGAGTGGAAGGTCTTCGGCGACGAAACCATTGAACATTGAGAAGGGTCGTGGAACTCAGCTCAAGGATATTCCAAACGTGGCTTTCAAGTTATCGAAGAGAAAACCGGATGACAATCTTCAATTACTGCACACAATTCTTTTTGGGAAGAAAGCAAAGTCTCACAGTTTAAAGAGAAACATTGTCCAGTTTTCAGGTTATGTGTGGGCTGAGAATGAGCAAGAAAAACAGAGGACAAGGGTAAAGGAGAAGCTTGATAAGTGTGTTAAAGAAAAGTTAATGGATTTTTGTGACGTGCTTAATATTCAAATCAATAAAGCTGGCACAAAGAAGGAAGAACTTTCTGCAAAGTTATTGGAGTTCTTGGAATCCCCACATGCTACAACTGATGTTTTGCTTGCTGAAAAGGAACAGAAAGGGCAAAAACGTAAGAAGAAGGTTACACCAAGTAAGATTGCAGGTTCTGGAGAAGGATCACCAGAAACTCCAGCCAAGAAACAAAAGGACACACCCAGTGTTGAAAAGAATGAAGAGTCAACCAAAGATGAAGAGGACGAATTTGATGATAAAGTTGAACCTTCTGATCCAAAGGATGATCCTTCTGAAGAAGATGATGATGACAGGATGAATGAAGAAACTGATCATGGGGATAAATCTGATGAAGAGGAAGATGAACCAAAGGACCAGGTGTCAAGTCCAAAAAGTTCATCCAAAGATGTGAAGGAGGGCTCAAAGGTTAAAACTGGGGGGAAGTCAACACCAGCTAAGAAGAAAACCCCTGCAAAATCTGTGAAAACTCCTACAGAGTCTGAAAAGAAATCTCGTTCTACTTCAAAAAGAGGTGCAAGTGATGCTGATGGAGCTTCTGGTTCTAAAGCAAAGGGATCTGTGAAAAAACAGAAAACTGAAAAGGAAAGCCCAAAGGATAGTAAGGCAAAAACCACTAGCAAAAAACAGTCGAGCAAGTCCCCAGCCAAGGTTCCAGCAAAGGATCAAGTGAAAGGCAAAACTAGCAAGAAGGCAAAGACAGAGCCCACAAAAGAAGATGTGCATGCTGTAATTGTTGACATTCTGAAGGAAGTGGACTTCAATACTGCAACTTTATCTGATATTCTCAGGCAACTTGGTACCCACTTTGGTATTGATTTAATGCATAGAAAAGCGGAGGTGAAGGACATAATTACGGATGTAATTAATAACATGACTGATGAGGAAGAAGAGGATGAAGAAGAGGAAGCAGCTGGTGATGATTCAGAGAAAGAGGACCATGATGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

545

Amino Acids

60.63

Weight (kDa)

5.56

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 464 - 516 4.3e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 806
Acc65I GGTACC 1 cut(s) 1484
AccB1I GGYRCC 1 cut(s) 1484
AciI CCGC 3 cut(s) 178, 231, 1520
AclWI GGATC 6 cut(s) 117, 838, 935, 947, 1249, 1356
AcsI RAATTY 1 cut(s) 914
AcuI CTGAAG 2 cut(s) 981, 1451
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 872
AfaI GTAC 1 cut(s) 1486
AfiI CCNNNNNNNGG 3 cut(s) 170, 362, 1333
AgsI TTSAA 9 cut(s) 71, 391, 445, 479, 665, 878, 932, 1191, 1447
AhdI GACNNNNNGTC 1 cut(s) 1045
AjiI CACGTC 1 cut(s) 652
AjnI CCWGG 1 cut(s) 1041
Alw26I GTCTC 2 cut(s) 228, 522
AlwI GGATC 6 cut(s) 117, 838, 935, 947, 1249, 1356
AlwNI CAGNNNCTG 2 cut(s) 821, 1166
Ama87I CYCGRG 2 cut(s) 125, 356
AoxI GGCC 2 cut(s) 84, 314
ApeKI GCWGC 2 cut(s) 223, 1595
ApoI RAATTY 1 cut(s) 914
AseI ATTAAT 1 cut(s) 1551
Asp700I GAANNNNTTC 1 cut(s) 370
Asp718I GGTACC 1 cut(s) 1484
AspS9I GGNCC 2 cut(s) 1039, 1621
AsuHPI GGTGA 4 cut(s) 316, 825, 1537, 1613
AvaI CYCGRG 2 cut(s) 125, 356
AvaII GGWCC 2 cut(s) 1039, 1621
BaeGI GKGCMC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 1484
BanII GRGCYC 2 cut(s) 1088, 1392
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 235, 1607
BccI CCATC 1 cut(s) 1208
BciT130I CCWGG 1 cut(s) 1043
BclI TGATCA 1 cut(s) 997
BcoDI GTCTC 2 cut(s) 228, 522
BfaI CTAG 4 cut(s) 17, 321, 1302, 1368
BfmI CTRYAG 1 cut(s) 1158
BfuAI ACCTGC 1 cut(s) 806
BisI GCNGC 2 cut(s) 224, 1596
BlsI GCNGC 2 cut(s) 225, 1597
Bme1390I CCNGG 1 cut(s) 1043
Bme18I GGWCC 2 cut(s) 1039, 1621
BmeRI GACNNNNNGTC 1 cut(s) 1045
BmeT110I CYCGRG 2 cut(s) 125, 356
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 2 cut(s) 1039, 1621
BmiI GGNNCC 3 cut(s) 291, 1338, 1486
BmrFI CCNGG 1 cut(s) 1043
BmrI ACTGGG 2 cut(s) 864, 1110
BmsI GCATC 2 cut(s) 1198, 1621
BmuI ACTGGG 2 cut(s) 864, 1110
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 2 cut(s) 828, 843
BpuEI CTTGAG 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 267, 1332
BsaWI WCCGGW 2 cut(s) 301, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 362, 1333
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 3 cut(s) 544, 870, 1105
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 1043
BseDI CCNNGG 2 cut(s) 267, 1332
BseGI GGATG 6 cut(s) 472, 955, 987, 1064, 1549, 1585
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 3 cut(s) 170, 362, 1333
BseMII CTCAG 6 cut(s) 201, 252, 363, 428, 558, 1486
BseNI ACTGG 3 cut(s) 544, 870, 1105
BseRI GAGGAG 2 cut(s) 35, 95
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 2 cut(s) 235, 1607
BseYI CCCAGC 1 cut(s) 1327
BsgI GTGCAG 1 cut(s) 470
BshFI GGCC 2 cut(s) 86, 316
BshNI GGYRCC 1 cut(s) 1484
BsiHKCI CYCGRG 2 cut(s) 125, 356
BsiSI CCGG 6 cut(s) 32, 87, 116, 293, 302, 464
BslFI GGGAC 1 cut(s) 1309
BslI CCNNNNNNNGG 3 cut(s) 170, 362, 1333
BsmAI GTCTC 2 cut(s) 228, 522
BsmFI GGGAC 1 cut(s) 1309
BsnI GGCC 2 cut(s) 86, 316
BsoBI CYCGRG 2 cut(s) 125, 356
Bsp1286I GDGCHC 3 cut(s) 126, 1088, 1392
Bsp143I GATC 7 cut(s) 109, 830, 940, 952, 997, 1241, 1348
BspACI CCGC 3 cut(s) 178, 231, 1520
BspANI GGCC 2 cut(s) 86, 316
BspCNI CTCAG 6 cut(s) 202, 251, 362, 427, 559, 1485
BspLI GGNNCC 3 cut(s) 291, 1338, 1486
BspMI ACCTGC 1 cut(s) 806
BspPI GGATC 6 cut(s) 117, 838, 935, 947, 1249, 1356
BspQI GCTCTTC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 1484
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 3 cut(s) 544, 870, 1105
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 267, 1332
BssMI GATC 7 cut(s) 109, 830, 940, 952, 997, 1241, 1348
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 1332
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 2 cut(s) 524, 1314
Bst6I CTCTTC 8 cut(s) 93, 194, 449, 882, 900, 1014, 1569, 1581
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1208
BstC8I GCNNGC 4 cut(s) 193, 679, 756, 1410
BstDEI CTNAG 8 cut(s) 210, 238, 349, 414, 567, 1122, 1472, 1635
BstF5I GGATG 6 cut(s) 472, 955, 987, 1064, 1549, 1585
BstKTI GATC 7 cut(s) 112, 833, 943, 955, 1000, 1244, 1351
BstMAI GTCTC 2 cut(s) 228, 522
BstMBI GATC 7 cut(s) 109, 830, 940, 952, 997, 1241, 1348
BstMWI GCNNNNNNNGC 6 cut(s) 11, 121, 201, 1208, 1217, 1368
BstNI CCWGG 1 cut(s) 1043
BstNSI RCATGY 2 cut(s) 737, 1412
BstSCI CCNGG 1 cut(s) 1041
BstSFI CTRYAG 1 cut(s) 1158
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 235, 1607
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 2 cut(s) 109, 1241
BstYI RGATCY 2 cut(s) 109, 1241
BsuRI GGCC 2 cut(s) 86, 316
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 6 cut(s) 472, 955, 987, 1064, 1549, 1585
BtsIMutI CAGTG 1 cut(s) 877
BveI ACCTGC 1 cut(s) 806
Cac8I GCNNGC 4 cut(s) 193, 679, 756, 1410
CaiI CAGNNNCTG 2 cut(s) 821, 1166
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 1039, 1621
CsiI ACCWGGT 1 cut(s) 1041
Csp6I GTAC 1 cut(s) 1485
CviAII CATG 5 cut(s) 734, 1001, 1409, 1558, 1625
CviQI GTAC 1 cut(s) 1485
DdeI CTNAG 8 cut(s) 210, 238, 349, 414, 567, 1122, 1472, 1635
DpnI GATC 7 cut(s) 111, 832, 942, 954, 999, 1243, 1350
DpnII GATC 7 cut(s) 109, 830, 940, 952, 997, 1241, 1348
DraI TTTAAA 1 cut(s) 528
DraIII CACNNNGTG 1 cut(s) 872
DriI GACNNNNNGTC 1 cut(s) 1045
Eam1104I CTCTTC 8 cut(s) 93, 194, 449, 882, 900, 1014, 1569, 1581
Eam1105I GACNNNNNGTC 1 cut(s) 1045
EarI CTCTTC 8 cut(s) 93, 194, 449, 882, 900, 1014, 1569, 1581
EciI GGCGGA 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 1332
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 2 cut(s) 1088, 1392
Eco47I GGWCC 2 cut(s) 1039, 1621
Eco57I CTGAAG 2 cut(s) 981, 1451
Eco88I CYCGRG 2 cut(s) 125, 356
EcoRII CCWGG 1 cut(s) 1041
EcoT14I CCWWGG 1 cut(s) 1332
EcoT22I ATGCAT 1 cut(s) 1512
EcoT38I GRGCYC 2 cut(s) 1088, 1392
ErhI CCWWGG 1 cut(s) 1332
FaeI CATG 5 cut(s) 737, 1004, 1412, 1561, 1628
FaiI YATR 8 cut(s) 558, 735, 1002, 1410, 1512, 1535, 1559, 1626
FaqI GGGAC 1 cut(s) 1309
FatI CATG 5 cut(s) 733, 1000, 1408, 1557, 1624
FbaI TGATCA 1 cut(s) 997
Fnu4HI GCNGC 2 cut(s) 224, 1596
FokI GGATG 6 cut(s) 479, 962, 994, 1051, 1556, 1592
FriOI GRGCYC 2 cut(s) 1088, 1392
Fsp4HI GCNGC 2 cut(s) 224, 1596
FspBI CTAG 4 cut(s) 17, 321, 1302, 1368
GluI GCNGC 2 cut(s) 224, 1596
GsaI CCCAGC 1 cut(s) 1331
GsuI CTGGAG 2 cut(s) 828, 843
HaeIII GGCC 2 cut(s) 86, 316
HapII CCGG 6 cut(s) 32, 87, 116, 293, 302, 464
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 737, 1004, 1412, 1561, 1628
HincII GTYRAC 3 cut(s) 894, 1113, 1423
HindII GTYRAC 3 cut(s) 894, 1113, 1423
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 7 cut(s) 181, 212, 236, 725, 890, 1163, 1607
HpaII CCGG 6 cut(s) 32, 87, 116, 293, 302, 464
HphI GGTGA 4 cut(s) 316, 825, 1537, 1613
Hpy166II GTNNAC 4 cut(s) 894, 1113, 1423, 1441
Hpy188I TCNGA 9 cut(s) 10, 186, 940, 961, 1015, 1168, 1431, 1465, 1612
Hpy188III TCNNGA 2 cut(s) 356, 822
Hpy8I GTNNAC 4 cut(s) 894, 1113, 1423, 1441
Hpy99I CGWCG 2 cut(s) 139, 382
HpyCH4III ACNGT 2 cut(s) 524, 1314
HpyCH4IV ACGT 3 cut(s) 435, 651, 784
HpyCH4V TGCA 8 cut(s) 487, 704, 815, 1139, 1202, 1408, 1454, 1510
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 121, 201, 1208, 1217, 1368
HpyF3I CTNAG 8 cut(s) 210, 238, 349, 414, 567, 1122, 1472, 1635
HpySE526I ACGT 3 cut(s) 435, 651, 784
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 737, 1004, 1412, 1561, 1628
KpnI GGTACC 1 cut(s) 1488
Ksp22I TGATCA 1 cut(s) 997
Kzo9I GATC 7 cut(s) 109, 830, 940, 952, 997, 1241, 1348
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 4 cut(s) 49, 289, 358, 1217
Lsp1109I GCAGC 2 cut(s) 235, 1607
LweI GCATC 2 cut(s) 1198, 1621
MabI ACCWGGT 1 cut(s) 1041
MaeI CTAG 4 cut(s) 17, 321, 1302, 1368
MaeII ACGT 3 cut(s) 435, 651, 784
MaeIII GTNAC 3 cut(s) 295, 647, 796
MalI GATC 7 cut(s) 111, 832, 942, 954, 999, 1243, 1350
MboI GATC 7 cut(s) 109, 830, 940, 952, 997, 1241, 1348
MflI RGATCY 2 cut(s) 109, 1241
MhlI GDGCHC 3 cut(s) 126, 1088, 1392
MluCI AATT 6 cut(s) 479, 492, 914, 1416, 1536, 1548
MlyI GAGTC 5 cut(s) 175, 221, 230, 899, 1172
Mph1103I ATGCAT 1 cut(s) 1512
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 7 cut(s) 527, 624, 635, 657, 1095, 1505, 1551
MslI CAYNNNNRTG 1 cut(s) 1629
MspA1I CMGCKG 2 cut(s) 242, 1598
MspI CCGG 6 cut(s) 32, 87, 116, 293, 302, 464
MspR9I CCNGG 1 cut(s) 1043
MvaI CCWGG 1 cut(s) 1043
MwoI GCNNNNNNNGC 6 cut(s) 11, 121, 201, 1208, 1217, 1368
NdeII GATC 7 cut(s) 109, 830, 940, 952, 997, 1241, 1348
NlaIII CATG 5 cut(s) 737, 1004, 1412, 1561, 1628
NlaIV GGNNCC 3 cut(s) 291, 1338, 1486
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 647
NsiI ATGCAT 1 cut(s) 1512
NspI RCATGY 2 cut(s) 737, 1412
PaeI GCATGC 1 cut(s) 1412
PceI AGGCCT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 725, 1607
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 225, 1597
PleI GAGTC 5 cut(s) 175, 220, 230, 898, 1171
PpsI GAGTC 5 cut(s) 175, 220, 230, 898, 1171
PshBI ATTAAT 1 cut(s) 1551
Psp6I CCWGG 1 cut(s) 1041
PspFI CCCAGC 1 cut(s) 1327
PspGI CCWGG 1 cut(s) 1041
PspN4I GGNNCC 3 cut(s) 291, 1338, 1486
PspPI GGNCC 2 cut(s) 1039, 1621
PstNI CAGNNNCTG 2 cut(s) 821, 1166
PsuI RGATCY 2 cut(s) 109, 1241
PsyI GACNNNGTC 1 cut(s) 211
PvuII CAGCTG 2 cut(s) 242, 1598
RsaI GTAC 1 cut(s) 1486
RsaNI GTAC 1 cut(s) 1485
RseI CAYNNNNRTG 1 cut(s) 1629
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 7 cut(s) 527, 624, 635, 657, 1095, 1505, 1551
SatI GCNGC 2 cut(s) 224, 1596
Sau3AI GATC 7 cut(s) 109, 830, 940, 952, 997, 1241, 1348
Sau96I GGNCC 2 cut(s) 1039, 1621
SchI GAGTC 5 cut(s) 175, 221, 230, 899, 1172
ScrFI CCNGG 1 cut(s) 1043
SduI GDGCHC 3 cut(s) 126, 1088, 1392
SexAI ACCWGGT 1 cut(s) 1041
SfaNI GCATC 2 cut(s) 1198, 1621
SfcI CTRYAG 1 cut(s) 1158
SinI GGWCC 2 cut(s) 1039, 1621
SmiMI CAYNNNNRTG 1 cut(s) 1629
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SphI GCATGC 1 cut(s) 1412
Sse9I AATT 6 cut(s) 479, 492, 914, 1416, 1536, 1548
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 3 cut(s) 178, 231, 1520
SspI AATATT 1 cut(s) 661
SspMI CTAG 4 cut(s) 17, 321, 1302, 1368
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 1041
StyI CCWWGG 1 cut(s) 1332
TaaI ACNGT 2 cut(s) 524, 1314
TaiI ACGT 3 cut(s) 438, 654, 787
TaqI TCGA 3 cut(s) 215, 452, 1316
TasI AATT 6 cut(s) 479, 492, 914, 1416, 1536, 1548
TfiI GAWTC 2 cut(s) 725, 1607
Tru1I TTAA 7 cut(s) 527, 624, 635, 657, 1095, 1505, 1551
Tru9I TTAA 7 cut(s) 527, 624, 635, 657, 1095, 1505, 1551
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 2 cut(s) 223, 1595
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 8 cut(s) 900, 918, 998, 1002, 1032, 1044, 1053, 1596
TspGWI ACGGA 2 cut(s) 152, 1556
TspRI CASTG 1 cut(s) 877
Tth111I GACNNNGTC 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 1039, 1621
VspI ATTAAT 1 cut(s) 1551
XapI RAATTY 1 cut(s) 914
XceI RCATGY 2 cut(s) 737, 1412
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 4 cut(s) 17, 321, 1302, 1368
Zsp2I ATGCAT 1 cut(s) 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.