pycom06g12880

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0006810
Physical Location & Seq
Reverse (-)
17980105 .. 17983893
3789 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12880.1

Sequence Viewer

Length: 1695 bp
ATGGCGTCCGAAGTCCTAGAGGAGAAGAAACCCGAGGACGAAGCTCCGGTGGCGGAGAAGCCGGAGGCTGAGGCCGAGGAGGTGACGAAGGAGGAGGCTAAGGAAGAGGAGCAAGAGAAAGAGGAAGAGAAGGAGAAGGAGAATGTTTCGGAAGCTTCCGAGAAGGTCACTGAGAAGGAGGAGAAAGTTGTTGAAGAAGGCCAAGAGGAGAAGGAGAAAGAGAGTGAGGAAACTCCGAAGAAGACTACGAGGGGTCGAAGGGCTAGCTTGAAGAAGGTGGAGAACGACCAGACCGAGTCGAAAAAAAGAGGCAGGGACTCGGCTGCGAAGAAGAGTAAAGAAGCTAAGGCGGAGAAGAAAGAGAAGGAACCGGTGACTCCGGTGAGTGAGAGGCCCACAAGGGAGAGGAAGCTAGTTGAGCGCTACTCAGCTCCAGAGAGTGGGCGGTCTTCCGGGACTAAATCCTTGAGCATTGAGAAGGGTCACGGTACAGAACTTAAGAATATCCCAAATGTGGCCTTCAAGATGTCAAAGAGAAAAGCAGATGACAACCTTCAATTACTTCACACAATTCTTTTTGGAAAAAAAGCTAAGCAGGAAAAACATCGGGCAAGGGTAAAGGAAAAGATTGATAAGTGTGTTAAAGAGAAGTTGATGGATTTTTGTGACTTGCTTAATATTCCGGTTAAGGGCACTACAAAGAAGGAAGATCTTTCTGTCAAGTTATTAGAGTTCTTGGAGTCGCCACATGCTACAACTGATATTTTGCTTGCTGAAAAGGAACAGAAAGGGCAAAAGCGGAGAAGGAAGGCTACACCGAGTAAGGCTGCAGGTTCTGGGGAAGCATCACCAGAAACATCAGCCAAGAAACAAAAAGAAACACCCAATTCTGACAAAAAGCAGGAGTCATCCAAAGCTGATGAAGAGGAGGATGATGACAAAGTTGAAACTTCAGATGTGAAGGATGGCTCCGGTGAAGATGATGACCACAATATGGTTAATGAAGAAAGTGACCCCGAAGAGAAATCTGATGAAGAGCAAAAAGAACCAAAGGACCAGGTTTCGAGTCCAAAAAGTTCATCCAAAAAGACTCTAAAAGAAGGTTCAAAGGCTAAAGCTGGTAGCAAAACAACACCTTCTAAGAAGAAAACCCCAGCAAAATCTGCAAAAACTCCTACAGAATCTGCGAAGAAATCTAGTTCTACTTTGAAAAGAGGTGCAACTGATGCTGAAGGAGCTTCTGGCTCAACAACTAAAGCAAAGAGATCAGCGAAAAAACAGAAGACTGAGAAGGAAAGCCCAAAGGATACCAAGGAAAAAGCCACTGGCAAAAAACAGTCAAGCAAGTCCCCAGCCAAGGCTCCAGCAAAGGATCAAGGAAAAGGGAAAGCTAGCAAGAAACCGAAGCCAGAGCCCACAAGAGATGATATGCATGCAGTAATTGTTGATATTCTGAAGGAAGTAGACTTCAATACTGCAACTTTATCGGACATTCTCAGGCAACTTGGTATCCACTTCAGTGTTGATTTGATGCATAGAAAAGCAGAGGTGAAGGCAATAATTACAGATGTAATTAACAACATGACTGACGAGGAAGATGAAGGCGAAGAAGCAGAGGAGAATGCGGAAGCTGGTGATGACTCAGACAAGGATGAAGAAAAGGATGACGATGGCAAGGACAACGATGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

565

Amino Acids

62.48

Weight (kDa)

5.7

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 472 - 524 4.2e-11 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 821
AccB7I CCANNNNNTGG 2 cut(s) 440, 994
AccI GTMKAC 1 cut(s) 1464
AciI CCGC 5 cut(s) 53, 350, 445, 799, 1625
AclWI GGATC 1 cut(s) 1380
AcuI CTGAAG 4 cut(s) 936, 1251, 1475, 1501
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 490
AfeI AGCGCT 1 cut(s) 422
AfiI CCNNNNNNNGG 5 cut(s) 440, 514, 689, 994, 1357
AflII CTTAAG 1 cut(s) 497
AgeI ACCGGT 1 cut(s) 370
AgsI TTSAA 8 cut(s) 194, 271, 523, 557, 947, 1107, 1210, 1471
AjnI CCWGG 1 cut(s) 1056
AleI CACNNNNGTG 1 cut(s) 1518
AlwI GGATC 1 cut(s) 1380
AlwNI CAGNNNCTG 2 cut(s) 836, 1184
Ama87I CYCGRG 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 422
AoxI GGCC 4 cut(s) 72, 199, 392, 516
ApeKI GCWGC 2 cut(s) 323, 827
AsiGI ACCGGT 1 cut(s) 370
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 393, 1054
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 7 cut(s) 94, 385, 394, 840, 986, 1561, 1646
AsuNHI GCTAGC 2 cut(s) 263, 1391
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 1054
BaeGI GKGCMC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 1416
BarI GAAGNNNNNNTAC 2 cut(s) 796, 828
BbsI GAAGAC 3 cut(s) 248, 441, 1289
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 310, 814
BccI CCATC 3 cut(s) 649, 959, 1664
BcgI CGANNNNNNTGC 2 cut(s) 1467, 1501
BciT130I CCWGG 1 cut(s) 1058
BciVI GTATCC 2 cut(s) 1300, 1520
BcnI CCSGG 1 cut(s) 454
BfaI CTAG 5 cut(s) 17, 264, 413, 1197, 1392
BfmI CTRYAG 2 cut(s) 828, 1176
BfoI RGCGCY 1 cut(s) 424
BfrI CTTAAG 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 821
BfuI GTATCC 2 cut(s) 1300, 1520
BglII AGATCT 1 cut(s) 709
BisI GCNGC 2 cut(s) 324, 828
BlpI GCTNAGC 1 cut(s) 591
BlsI GCNGC 2 cut(s) 325, 829
Bme1390I CCNGG 2 cut(s) 454, 1058
Bme18I GGWCC 1 cut(s) 1054
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 393, 1054
BmiI GGNNCC 3 cut(s) 369, 970, 1362
BmrFI CCNGG 2 cut(s) 454, 1058
BmsI GCATC 4 cut(s) 854, 1216, 1521, 1678
BmtI GCTAGC 2 cut(s) 267, 1395
BpiI GAAGAC 3 cut(s) 248, 441, 1289
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 2 cut(s) 417, 1347
Bpu10I CCTNAGC 3 cut(s) 69, 99, 345
Bpu1102I GCTNAGC 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 487
BpuMI CCSGG 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 33, 75, 1311, 1356
BsaWI WCCGGW 5 cut(s) 46, 370, 379, 682, 971
Bsc4I CCNNNNNNNGG 5 cut(s) 440, 514, 689, 994, 1357
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 1330
BseBI CCWGG 1 cut(s) 1058
BseDI CCNNGG 4 cut(s) 33, 75, 1311, 1356
BseGI GGATG 6 cut(s) 908, 937, 970, 1079, 1657, 1669
BseLI CCNNNNNNNGG 5 cut(s) 440, 514, 689, 994, 1357
BseMII CTCAG 6 cut(s) 60, 162, 441, 1278, 1510, 1656
BseNI ACTGG 1 cut(s) 1330
BseRI GAGGAG 8 cut(s) 35, 92, 107, 122, 194, 221, 941, 1631
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 2 cut(s) 310, 814
BseYI CCCAGC 2 cut(s) 1153, 1351
BshFI GGCC 4 cut(s) 74, 201, 394, 518
BshTI ACCGGT 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 7 cut(s) 47, 62, 371, 380, 453, 683, 972
BslFI GGGAC 3 cut(s) 329, 469, 1333
BslI CCNNNNNNNGG 5 cut(s) 440, 514, 689, 994, 1357
BsmFI GGGAC 3 cut(s) 329, 469, 1333
BsmI GAATGC 1 cut(s) 1627
BsnI GGCC 4 cut(s) 74, 201, 394, 518
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 695, 1416
Bsp143I GATC 3 cut(s) 709, 1265, 1372
Bsp1720I GCTNAGC 1 cut(s) 591
BspACI CCGC 5 cut(s) 53, 350, 445, 799, 1625
BspANI GGCC 4 cut(s) 74, 201, 394, 518
BspCNI CTCAG 6 cut(s) 61, 163, 440, 1279, 1509, 1655
BspLI GGNNCC 3 cut(s) 369, 970, 1362
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 1 cut(s) 821
BspOI GCTAGC 2 cut(s) 267, 1395
BspPI GGATC 1 cut(s) 1380
BspQI GCTCTTC 1 cut(s) 1029
BspTI CTTAAG 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 1330
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 4 cut(s) 33, 75, 1311, 1356
BssMI GATC 3 cut(s) 709, 1265, 1372
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 1311, 1356
Bst2UI CCWGG 1 cut(s) 1058
Bst4CI ACNGT 2 cut(s) 488, 1338
Bst6I CTCTTC 6 cut(s) 99, 120, 326, 918, 1014, 1029
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 497
BstAPI GCANNNNNTGC 2 cut(s) 1163, 1226
BstC8I GCNNGC 4 cut(s) 265, 771, 1393, 1434
BstF5I GGATG 6 cut(s) 908, 937, 970, 1079, 1657, 1669
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 3 cut(s) 712, 1268, 1375
BstMBI GATC 3 cut(s) 709, 1265, 1372
BstMWI GCNNNNNNNGC 5 cut(s) 50, 418, 1163, 1226, 1235
BstNI CCWGG 1 cut(s) 1058
BstNSI RCATGY 2 cut(s) 752, 1436
BstSCI CCNGG 2 cut(s) 452, 1056
BstSFI CTRYAG 2 cut(s) 828, 1176
BstSLI GKGCMC 1 cut(s) 695
BstV1I GCAGC 2 cut(s) 310, 814
BstV2I GAAGAC 3 cut(s) 248, 441, 1289
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BsuI GTATCC 2 cut(s) 1300, 1520
BsuRI GGCC 4 cut(s) 74, 201, 394, 518
BtsCI GGATG 6 cut(s) 908, 937, 970, 1079, 1657, 1669
BtsIMutI CAGTG 3 cut(s) 168, 1323, 1525
BveI ACCTGC 1 cut(s) 821
Cac8I GCNNGC 4 cut(s) 265, 771, 1393, 1434
CaiI CAGNNNCTG 2 cut(s) 836, 1184
CfoI GCGC 1 cut(s) 423
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 393, 1054
CsiI ACCWGGT 1 cut(s) 1056
Csp6I GTAC 1 cut(s) 489
CspAI ACCGGT 1 cut(s) 370
CviAII CATG 3 cut(s) 749, 1433, 1582
CviQI GTAC 1 cut(s) 489
DpnI GATC 3 cut(s) 711, 1267, 1374
DpnII GATC 3 cut(s) 709, 1265, 1372
Eam1104I CTCTTC 6 cut(s) 99, 120, 326, 918, 1014, 1029
EarI CTCTTC 6 cut(s) 99, 120, 326, 918, 1014, 1029
EciI GGCGGA 2 cut(s) 68, 365
Eco130I CCWWGG 2 cut(s) 1311, 1356
Eco24I GRGCYC 1 cut(s) 1416
Eco47I GGWCC 1 cut(s) 1054
Eco47III AGCGCT 1 cut(s) 422
Eco57I CTGAAG 4 cut(s) 936, 1251, 1475, 1501
Eco88I CYCGRG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 1056
EcoT14I CCWWGG 2 cut(s) 1311, 1356
EcoT22I ATGCAT 2 cut(s) 1434, 1536
EcoT38I GRGCYC 1 cut(s) 1416
ErhI CCWWGG 2 cut(s) 1311, 1356
FaeI CATG 3 cut(s) 752, 1436, 1585
FaiI YATR 6 cut(s) 750, 995, 1430, 1434, 1536, 1583
FaqI GGGAC 3 cut(s) 329, 469, 1333
FatI CATG 3 cut(s) 748, 1432, 1581
FblI GTMKAC 1 cut(s) 1464
Fnu4HI GCNGC 2 cut(s) 324, 828
FokI GGATG 6 cut(s) 895, 944, 977, 1066, 1664, 1676
FriOI GRGCYC 1 cut(s) 1416
Fsp4HI GCNGC 2 cut(s) 324, 828
FspBI CTAG 5 cut(s) 17, 264, 413, 1197, 1392
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 324, 828
GsaI CCCAGC 2 cut(s) 1157, 1355
GsuI CTGGAG 2 cut(s) 417, 1347
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 4 cut(s) 74, 201, 394, 518
HapII CCGG 7 cut(s) 47, 62, 371, 380, 453, 683, 972
HhaI GCGC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 752, 1436, 1585
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 9 cut(s) 296, 317, 376, 740, 905, 1066, 1090, 1181, 1640
HpaII CCGG 7 cut(s) 47, 62, 371, 380, 453, 683, 972
HphI GGTGA 7 cut(s) 94, 385, 394, 840, 986, 1561, 1646
Hpy166II GTNNAC 1 cut(s) 1465
Hpy188III TCNNGA 2 cut(s) 434, 523
Hpy8I GTNNAC 1 cut(s) 1465
HpyCH4III ACNGT 2 cut(s) 488, 1338
HpyCH4V TGCA 7 cut(s) 830, 1166, 1220, 1432, 1436, 1478, 1534
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 418, 1163, 1226, 1235
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 752, 1436, 1585
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 3 cut(s) 709, 1265, 1372
LguI GCTCTTC 1 cut(s) 1029
LmnI GCTCC 6 cut(s) 49, 109, 436, 974, 1235, 1366
Lsp1109I GCAGC 2 cut(s) 310, 814
LweI GCATC 4 cut(s) 854, 1216, 1521, 1678
MabI ACCWGGT 1 cut(s) 1056
MaeI CTAG 5 cut(s) 17, 264, 413, 1197, 1392
MaeIII GTNAC 6 cut(s) 82, 166, 373, 482, 665, 1010
MalI GATC 3 cut(s) 711, 1267, 1374
MboI GATC 3 cut(s) 709, 1265, 1372
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 2 cut(s) 695, 1416
MluCI AATT 6 cut(s) 557, 570, 886, 1440, 1560, 1572
MlyI GAGTC 8 cut(s) 305, 311, 370, 749, 914, 1075, 1084, 1634
Mph1103I ATGCAT 2 cut(s) 1434, 1536
MseI TTAA 7 cut(s) 498, 642, 675, 687, 999, 1575, 1693
MslI CAYNNNNRTG 1 cut(s) 1518
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 7 cut(s) 47, 62, 371, 380, 453, 683, 972
MspR9I CCNGG 2 cut(s) 454, 1058
Mva1269I GAATGC 1 cut(s) 1627
MvaI CCWGG 1 cut(s) 1058
MwoI GCNNNNNNNGC 5 cut(s) 50, 418, 1163, 1226, 1235
NciI CCSGG 1 cut(s) 454
NdeII GATC 3 cut(s) 709, 1265, 1372
NheI GCTAGC 2 cut(s) 263, 1391
NlaIII CATG 3 cut(s) 752, 1436, 1585
NlaIV GGNNCC 3 cut(s) 369, 970, 1362
NmeAIII GCCGAG 2 cut(s) 100, 299
NmuCI GTSAC 6 cut(s) 82, 166, 373, 482, 665, 1010
NsiI ATGCAT 2 cut(s) 1434, 1536
NspI RCATGY 2 cut(s) 752, 1436
OliI CACNNNNGTG 1 cut(s) 1518
PaeI GCATGC 1 cut(s) 1436
PciSI GCTCTTC 1 cut(s) 1029
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 1627
PfeI GAWTC 1 cut(s) 1181
PflFI GACNNNGTC 1 cut(s) 295
PflMI CCANNNNNTGG 2 cut(s) 440, 994
PfoI TCCNGGA 1 cut(s) 452
PinAI ACCGGT 1 cut(s) 370
PkrI GCNGC 2 cut(s) 325, 829
PleI GAGTC 8 cut(s) 304, 311, 370, 748, 913, 1074, 1084, 1634
PpsI GAGTC 8 cut(s) 304, 311, 370, 748, 913, 1074, 1084, 1634
Psp6I CCWGG 1 cut(s) 1056
PspFI CCCAGC 2 cut(s) 1153, 1351
PspGI CCWGG 1 cut(s) 1056
PspN4I GGNNCC 3 cut(s) 369, 970, 1362
PspPI GGNCC 2 cut(s) 393, 1054
PstI CTGCAG 1 cut(s) 832
PstNI CAGNNNCTG 2 cut(s) 836, 1184
PsuI RGATCY 1 cut(s) 709
PsyI GACNNNGTC 1 cut(s) 295
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
RseI CAYNNNNRTG 1 cut(s) 1518
SapI GCTCTTC 1 cut(s) 1029
SaqAI TTAA 7 cut(s) 498, 642, 675, 687, 999, 1575, 1693
SatI GCNGC 2 cut(s) 324, 828
Sau3AI GATC 3 cut(s) 709, 1265, 1372
Sau96I GGNCC 2 cut(s) 393, 1054
SchI GAGTC 8 cut(s) 305, 311, 370, 749, 914, 1075, 1084, 1634
ScrFI CCNGG 2 cut(s) 454, 1058
SduI GDGCHC 2 cut(s) 695, 1416
SexAI ACCWGGT 1 cut(s) 1056
SfaNI GCATC 4 cut(s) 854, 1216, 1521, 1678
SfcI CTRYAG 2 cut(s) 828, 1176
SinI GGWCC 1 cut(s) 1054
SmiMI CAYNNNNRTG 1 cut(s) 1518
SmlI CTYRAG 2 cut(s) 466, 497
SmoI CTYRAG 2 cut(s) 466, 497
SphI GCATGC 1 cut(s) 1436
Sse9I AATT 6 cut(s) 557, 570, 886, 1440, 1560, 1572
SsiI CCGC 5 cut(s) 53, 350, 445, 799, 1625
SspI AATATT 1 cut(s) 679
SspMI CTAG 5 cut(s) 17, 264, 413, 1197, 1392
StyD4I CCNGG 2 cut(s) 452, 1056
StyI CCWWGG 2 cut(s) 1311, 1356
TaaI ACNGT 2 cut(s) 488, 1338
TaqI TCGA 3 cut(s) 256, 299, 1064
TaqII GACCGA 1 cut(s) 308
TasI AATT 6 cut(s) 557, 570, 886, 1440, 1560, 1572
TfiI GAWTC 1 cut(s) 1181
Tru1I TTAA 7 cut(s) 498, 642, 675, 687, 999, 1575, 1693
Tru9I TTAA 7 cut(s) 498, 642, 675, 687, 999, 1575, 1693
TscAI CASTG 3 cut(s) 175, 1330, 1525
TseFI GTSAC 6 cut(s) 82, 166, 373, 482, 665, 1010
TseI GCWGC 2 cut(s) 323, 827
Tsp45I GTSAC 6 cut(s) 82, 166, 373, 482, 665, 1010
TspDTI ATGAA 6 cut(s) 936, 1017, 1047, 1068, 1614, 1668
TspRI CASTG 3 cut(s) 175, 1330, 1525
Tth111I GACNNNGTC 1 cut(s) 295
Van91I CCANNNNNTGG 2 cut(s) 440, 994
Vha464I CTTAAG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 1054
XceI RCATGY 2 cut(s) 752, 1436
XmiI GTMKAC 1 cut(s) 1464
XspI CTAG 5 cut(s) 17, 264, 413, 1197, 1392
Zsp2I ATGCAT 2 cut(s) 1434, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.