Rw7G008940

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006810
Physical Location & Seq
Reverse (-)
8359898 .. 8365144
5247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008940.1

Sequence Viewer

Length: 1647 bp
ATGGCGTCCGAAGCCCTAGAGGAGAAGAAGCCGGAAGAAGAAGCTCCTGTTGAGGATAAACAGGAGGTTGAAGCTGGAGAGGAGGCTAAAGAGGAGCCCGGAGAGGACGAAGAGAAAGAGGATCTGCCGGAAGTGCCCGAGAAGGCGACGGAGAACGAGCAAGAGGTAGCTGAGGAAGGCGAAGAAACTCCCAAGAAAGGTAAGCGGACTCGGAGAGCCAGCTCGAAGAAGCAGCGAGGCGGAGACTCAGCTGTGAAGAAGCCGAAGAAGGAAGCAGAGGTGGAAAAGAAGGAGAAGGAGCCGGTTACTCCGGTGAGTGAGAGGCCTACTAGGGAGAGGAAAGTAGTTGAGAGATACTCAGCTCCCGAGAGTGGAAGGTCTTCGGCCACGAAACCATTGAACATTGAGAAGGGTCGTGGAACTCAGCTCAAGGATATTCCAAACGTGGCTTTCAAGTTATCGAAGAGAAAACCGGATGACAATCTTCAATTACTGCACACAATTCTTTTTGGGAAGAAAGCAAAGTCTCACAGTTTAAAGAGAAACATTGTCCAGTTTTCAGGTTATGTGTGGGCTGAGAATGAGCAAGAAAAACAGAGGACAAGGGTAAAGGAGAAGCTTGATAAGTGTGTTAAAGAAAAGTTAATGGATTTTTGTGACGTGCTTAATATTCAAATCAATAAAGCTGGCACAAAGAAGGAAGAACTTTCTGCAAAGTTATTGGAGTTCTTGGAATCCCCACATGCTACAACTGATGTTTTGCTGGCTGAAAAGGAACAGAAAGGGCAAAAGCGTAAGAAGAAGGTTACACCAAGTAAGATTGCAGGTTCTGGAGAAGGATCACCGGAAACTCCAGCCAAGAAACAAAAGGACACACCCAGTGTTGAAAAGAATGAAGAGTCAACCAAAGATGAAGAGGACGAATTTGATGATAAAGTTGAACCTTCAGATCCAAAGGATGATCCTCTTGAAGAAGATGATGATGACAGGATGAATGAAGAAACTGATCATGGGGATAAATCTGATGAAGAGGAAGATGAACCAAAGGACCAGGTGTCAAGTCCAAAAAGTTCATCCAAAGATGTGAAGGAGGGCTCAAAGGTTAAAACTGGGGGGAAGTCAACACCAGCTAAGAAGAAAACCCCTGCAAAATCTGTGAAAACTCCTACAGAGTCTGAAAAGAAATCTCGTTCTACTTCAAAAAGAGGTGCAAGTGATGCTGATGGAGCTTCTGGTTCTAAAGCAAAGGGATCTGTGAAAAAACAGAAAACTGAAAAGGAAAGCCCAAAGGATAGTAAGACAAAAACCACTAGCAAAAAACAGTCGAGCAAGTCCCCAGCCAAGGTTCCAGCAAAGGATCAAGTGAAAGGCAAAACTAGCAAGAAGGCAAAGGCAGAGCCCACAAAAGAAGATGTGCATGCTGTAATTGTTGACATTCTGAAGGAAGTGGACTTCAATACTGCAACTTTATCTGATATTCTCAGGCAACTTGGTACCCACTTTGGTATTGATTTAATGCATAGAAAAGCGGAGGTGAAGGACATAATTACGGATGTAATTAATAACATGACTGATGAGGAAGAAGAGGATGAAGAAGAGGAAGCAGCTGGTGATGATTCAGAGAAAGAGGACCATGATGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

548

Amino Acids

60.95

Weight (kDa)

5.39

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 467 - 519 4.4e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 815
Acc65I GGTACC 1 cut(s) 1493
AccB1I GGYRCC 1 cut(s) 1493
AciI CCGC 3 cut(s) 205, 240, 1529
AclWI GGATC 6 cut(s) 129, 847, 944, 956, 1258, 1365
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 923
AcuI CTGAAG 2 cut(s) 930, 1460
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 881
AfaI GTAC 1 cut(s) 1495
AfiI CCNNNNNNNGG 3 cut(s) 197, 371, 1342
AhdI GACNNNNNGTC 1 cut(s) 1054
AjiI CACGTC 1 cut(s) 661
AjnI CCWGG 1 cut(s) 1050
Alw26I GTCTC 2 cut(s) 237, 531
AlwI GGATC 6 cut(s) 129, 847, 944, 956, 1258, 1365
AlwNI CAGNNNCTG 2 cut(s) 830, 1175
Ama87I CYCGRG 2 cut(s) 137, 365
AoxI GGCC 2 cut(s) 323, 384
ApeKI GCWGC 2 cut(s) 232, 1604
ApoI RAATTY 1 cut(s) 923
AseI ATTAAT 1 cut(s) 1560
Asp700I GAANNNNTTC 1 cut(s) 379
Asp718I GGTACC 1 cut(s) 1493
AspS9I GGNCC 2 cut(s) 1048, 1630
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 4 cut(s) 325, 834, 1546, 1622
AvaI CYCGRG 2 cut(s) 137, 365
AvaII GGWCC 2 cut(s) 1048, 1630
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 1493
BanII GRGCYC 3 cut(s) 99, 1097, 1401
BbsI GAAGAC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 244, 1616
BccI CCATC 1 cut(s) 1217
BciT130I CCWGG 1 cut(s) 1052
BclI TGATCA 1 cut(s) 1006
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 237, 531
BfaI CTAG 4 cut(s) 17, 330, 1311, 1377
BfmI CTRYAG 1 cut(s) 1167
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 2 cut(s) 233, 1605
BlsI GCNGC 2 cut(s) 234, 1606
Bme1390I CCNGG 2 cut(s) 99, 1052
Bme18I GGWCC 2 cut(s) 1048, 1630
BmeRI GACNNNNNGTC 1 cut(s) 1054
BmeT110I CYCGRG 2 cut(s) 137, 365
BmgBI CACGTC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 1048, 1630
BmiI GGNNCC 4 cut(s) 96, 300, 1347, 1495
BmrFI CCNGG 2 cut(s) 99, 1052
BmrI ACTGGG 2 cut(s) 873, 1119
BmsI GCATC 2 cut(s) 1207, 1630
BmuI ACTGGG 2 cut(s) 873, 1119
BpiI GAAGAC 1 cut(s) 372
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 3 cut(s) 96, 837, 852
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 1341
BsaWI WCCGGW 3 cut(s) 310, 472, 844
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 371, 1342
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 3 cut(s) 553, 879, 1114
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 1052
BseDI CCNNGG 1 cut(s) 1341
BseGI GGATG 6 cut(s) 481, 964, 996, 1073, 1558, 1594
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 3 cut(s) 197, 371, 1342
BseMII CTCAG 6 cut(s) 162, 261, 372, 437, 567, 1495
BseNI ACTGG 3 cut(s) 553, 879, 1114
BseRI GAGGAG 3 cut(s) 35, 95, 107
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 244, 1616
BseYI CCCAGC 1 cut(s) 1336
BsgI GTGCAG 1 cut(s) 479
BshFI GGCC 2 cut(s) 325, 386
BshNI GGYRCC 1 cut(s) 1493
BsiHKCI CYCGRG 2 cut(s) 137, 365
BsiSI CCGG 7 cut(s) 32, 99, 128, 302, 311, 473, 845
BslFI GGGAC 1 cut(s) 1318
BslI CCNNNNNNNGG 3 cut(s) 197, 371, 1342
BsmAI GTCTC 2 cut(s) 237, 531
BsmFI GGGAC 1 cut(s) 1318
BsnI GGCC 2 cut(s) 325, 386
BsoBI CYCGRG 2 cut(s) 137, 365
Bsp1286I GDGCHC 4 cut(s) 99, 138, 1097, 1401
Bsp143I GATC 7 cut(s) 121, 839, 949, 961, 1006, 1250, 1357
BspACI CCGC 3 cut(s) 205, 240, 1529
BspANI GGCC 2 cut(s) 325, 386
BspCNI CTCAG 6 cut(s) 163, 260, 371, 436, 568, 1494
BspLI GGNNCC 4 cut(s) 96, 300, 1347, 1495
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 6 cut(s) 129, 847, 944, 956, 1258, 1365
BspT107I GGYRCC 1 cut(s) 1493
BsrFI RCCGGY 1 cut(s) 301
BsrI ACTGG 3 cut(s) 553, 879, 1114
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 1341
BssMI GATC 7 cut(s) 121, 839, 949, 961, 1006, 1250, 1357
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 1341
Bst2UI CCWGG 1 cut(s) 1052
Bst4CI ACNGT 2 cut(s) 533, 1323
Bst6I CTCTTC 7 cut(s) 105, 458, 891, 909, 1023, 1578, 1590
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstC8I GCNNGC 4 cut(s) 220, 688, 765, 1419
BstDEI CTNAG 8 cut(s) 171, 247, 358, 423, 576, 1131, 1481, 1644
BstF5I GGATG 6 cut(s) 481, 964, 996, 1073, 1558, 1594
BstKTI GATC 7 cut(s) 124, 842, 952, 964, 1009, 1253, 1360
BstMAI GTCTC 2 cut(s) 237, 531
BstMBI GATC 7 cut(s) 121, 839, 949, 961, 1006, 1250, 1357
BstMWI GCNNNNNNNGC 5 cut(s) 11, 133, 1217, 1226, 1377
BstNI CCWGG 1 cut(s) 1052
BstNSI RCATGY 2 cut(s) 746, 1421
BstSCI CCNGG 2 cut(s) 97, 1050
BstSFI CTRYAG 1 cut(s) 1167
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 244, 1616
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 3 cut(s) 121, 949, 1250
BstYI RGATCY 3 cut(s) 121, 949, 1250
BsuRI GGCC 2 cut(s) 325, 386
BtrI CACGTC 1 cut(s) 661
BtsCI GGATG 6 cut(s) 481, 964, 996, 1073, 1558, 1594
BtsIMutI CAGTG 1 cut(s) 886
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 4 cut(s) 220, 688, 765, 1419
CaiI CAGNNNCTG 2 cut(s) 830, 1175
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 1048, 1630
CsiI ACCWGGT 1 cut(s) 1050
Csp6I GTAC 1 cut(s) 1494
CviAII CATG 5 cut(s) 743, 1010, 1418, 1567, 1634
CviQI GTAC 1 cut(s) 1494
DdeI CTNAG 8 cut(s) 171, 247, 358, 423, 576, 1131, 1481, 1644
DpnI GATC 7 cut(s) 123, 841, 951, 963, 1008, 1252, 1359
DpnII GATC 7 cut(s) 121, 839, 949, 961, 1006, 1250, 1357
DraI TTTAAA 1 cut(s) 537
DraIII CACNNNGTG 1 cut(s) 881
DriI GACNNNNNGTC 1 cut(s) 1054
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 7 cut(s) 105, 458, 891, 909, 1023, 1578, 1590
Eam1105I GACNNNNNGTC 1 cut(s) 1054
EarI CTCTTC 7 cut(s) 105, 458, 891, 909, 1023, 1578, 1590
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 1341
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 3 cut(s) 99, 1097, 1401
Eco47I GGWCC 2 cut(s) 1048, 1630
Eco57I CTGAAG 2 cut(s) 930, 1460
Eco88I CYCGRG 2 cut(s) 137, 365
EcoRII CCWGG 1 cut(s) 1050
EcoT14I CCWWGG 1 cut(s) 1341
EcoT22I ATGCAT 1 cut(s) 1521
EcoT38I GRGCYC 3 cut(s) 99, 1097, 1401
ErhI CCWWGG 1 cut(s) 1341
FaeI CATG 5 cut(s) 746, 1013, 1421, 1570, 1637
FaiI YATR 8 cut(s) 567, 744, 1011, 1419, 1521, 1544, 1568, 1635
FaqI GGGAC 1 cut(s) 1318
FatI CATG 5 cut(s) 742, 1009, 1417, 1566, 1633
FbaI TGATCA 1 cut(s) 1006
Fnu4HI GCNGC 2 cut(s) 233, 1605
FokI GGATG 6 cut(s) 488, 971, 1003, 1060, 1565, 1601
FriOI GRGCYC 3 cut(s) 99, 1097, 1401
Fsp4HI GCNGC 2 cut(s) 233, 1605
FspBI CTAG 4 cut(s) 17, 330, 1311, 1377
GluI GCNGC 2 cut(s) 233, 1605
GsaI CCCAGC 1 cut(s) 1340
GsuI CTGGAG 3 cut(s) 96, 837, 852
HaeIII GGCC 2 cut(s) 325, 386
HapII CCGG 7 cut(s) 32, 99, 128, 302, 311, 473, 845
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 746, 1013, 1421, 1570, 1637
HincII GTYRAC 3 cut(s) 903, 1122, 1432
HindII GTYRAC 3 cut(s) 903, 1122, 1432
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 6 cut(s) 208, 245, 734, 899, 1172, 1616
HpaII CCGG 7 cut(s) 32, 99, 128, 302, 311, 473, 845
HphI GGTGA 4 cut(s) 325, 834, 1546, 1622
Hpy166II GTNNAC 4 cut(s) 903, 1122, 1432, 1450
Hpy188I TCNGA 8 cut(s) 10, 213, 949, 1024, 1177, 1440, 1474, 1621
Hpy188III TCNNGA 3 cut(s) 365, 831, 968
Hpy8I GTNNAC 4 cut(s) 903, 1122, 1432, 1450
Hpy99I CGWCG 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 533, 1323
HpyCH4IV ACGT 2 cut(s) 444, 660
HpyCH4V TGCA 8 cut(s) 496, 713, 824, 1148, 1211, 1417, 1463, 1519
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 133, 1217, 1226, 1377
HpyF3I CTNAG 8 cut(s) 171, 247, 358, 423, 576, 1131, 1481, 1644
HpySE526I ACGT 2 cut(s) 444, 660
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 746, 1013, 1421, 1570, 1637
KpnI GGTACC 1 cut(s) 1497
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 7 cut(s) 121, 839, 949, 961, 1006, 1250, 1357
LmnI GCTCC 5 cut(s) 49, 94, 298, 367, 1226
Lsp1109I GCAGC 2 cut(s) 244, 1616
LweI GCATC 2 cut(s) 1207, 1630
MabI ACCWGGT 1 cut(s) 1050
MaeI CTAG 4 cut(s) 17, 330, 1311, 1377
MaeII ACGT 2 cut(s) 444, 660
MaeIII GTNAC 3 cut(s) 304, 656, 805
MalI GATC 7 cut(s) 123, 841, 951, 963, 1008, 1252, 1359
MboI GATC 7 cut(s) 121, 839, 949, 961, 1006, 1250, 1357
MflI RGATCY 3 cut(s) 121, 949, 1250
MhlI GDGCHC 4 cut(s) 99, 138, 1097, 1401
MluCI AATT 6 cut(s) 488, 501, 923, 1425, 1545, 1557
MlyI GAGTC 4 cut(s) 202, 239, 908, 1181
Mph1103I ATGCAT 1 cut(s) 1521
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 7 cut(s) 536, 633, 644, 666, 1104, 1514, 1560
MslI CAYNNNNRTG 1 cut(s) 1638
MspA1I CMGCKG 2 cut(s) 251, 1607
MspI CCGG 7 cut(s) 32, 99, 128, 302, 311, 473, 845
MspR9I CCNGG 2 cut(s) 99, 1052
MvaI CCWGG 1 cut(s) 1052
MwoI GCNNNNNNNGC 5 cut(s) 11, 133, 1217, 1226, 1377
NciI CCSGG 1 cut(s) 99
NdeII GATC 7 cut(s) 121, 839, 949, 961, 1006, 1250, 1357
NlaIII CATG 5 cut(s) 746, 1013, 1421, 1570, 1637
NlaIV GGNNCC 4 cut(s) 96, 300, 1347, 1495
NmuCI GTSAC 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 1521
NspI RCATGY 2 cut(s) 746, 1421
PaeI GCATGC 1 cut(s) 1421
PceI AGGCCT 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 734, 1616
PkrI GCNGC 2 cut(s) 234, 1606
PleI GAGTC 4 cut(s) 202, 239, 907, 1180
PpsI GAGTC 4 cut(s) 202, 239, 907, 1180
PshBI ATTAAT 1 cut(s) 1560
Psp6I CCWGG 1 cut(s) 1050
PspFI CCCAGC 1 cut(s) 1336
PspGI CCWGG 1 cut(s) 1050
PspN4I GGNNCC 4 cut(s) 96, 300, 1347, 1495
PspPI GGNCC 2 cut(s) 1048, 1630
PstNI CAGNNNCTG 2 cut(s) 830, 1175
PsuI RGATCY 3 cut(s) 121, 949, 1250
PvuII CAGCTG 2 cut(s) 251, 1607
RsaI GTAC 1 cut(s) 1495
RsaNI GTAC 1 cut(s) 1494
RseI CAYNNNNRTG 1 cut(s) 1638
SaqAI TTAA 7 cut(s) 536, 633, 644, 666, 1104, 1514, 1560
SatI GCNGC 2 cut(s) 233, 1605
Sau3AI GATC 7 cut(s) 121, 839, 949, 961, 1006, 1250, 1357
Sau96I GGNCC 2 cut(s) 1048, 1630
SchI GAGTC 4 cut(s) 202, 239, 908, 1181
ScrFI CCNGG 2 cut(s) 99, 1052
SduI GDGCHC 4 cut(s) 99, 138, 1097, 1401
SexAI ACCWGGT 1 cut(s) 1050
SfaNI GCATC 2 cut(s) 1207, 1630
SfcI CTRYAG 1 cut(s) 1167
SinI GGWCC 2 cut(s) 1048, 1630
SmiMI CAYNNNNRTG 1 cut(s) 1638
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
SphI GCATGC 1 cut(s) 1421
Sse9I AATT 6 cut(s) 488, 501, 923, 1425, 1545, 1557
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 3 cut(s) 205, 240, 1529
SspI AATATT 1 cut(s) 670
SspMI CTAG 4 cut(s) 17, 330, 1311, 1377
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 97, 1050
StyI CCWWGG 1 cut(s) 1341
TaaI ACNGT 2 cut(s) 533, 1323
TaiI ACGT 2 cut(s) 447, 663
TaqI TCGA 3 cut(s) 224, 461, 1325
TasI AATT 6 cut(s) 488, 501, 923, 1425, 1545, 1557
TfiI GAWTC 2 cut(s) 734, 1616
Tru1I TTAA 7 cut(s) 536, 633, 644, 666, 1104, 1514, 1560
Tru9I TTAA 7 cut(s) 536, 633, 644, 666, 1104, 1514, 1560
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 2 cut(s) 232, 1604
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 8 cut(s) 909, 927, 1007, 1011, 1041, 1053, 1062, 1605
TspGWI ACGGA 2 cut(s) 164, 1565
TspRI CASTG 1 cut(s) 886
VpaK11BI GGWCC 2 cut(s) 1048, 1630
VspI ATTAAT 1 cut(s) 1560
XapI RAATTY 1 cut(s) 923
XceI RCATGY 2 cut(s) 746, 1421
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 4 cut(s) 17, 330, 1311, 1377
Zsp2I ATGCAT 1 cut(s) 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.