Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001924.1

Orthogroup ID

OG0006810

Physical Location & Seq

Genomic Coordinates Reverse (-)

52420 .. 56876

Gene Structure 4457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001924.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

atggcgtccgaagccctagaggagaagaagccggaagaagaagctcctgttgaggataaacaggaggttgaagctggagaggaggctaaagaggagcccggagaggacgaagagaaagaggatctgccggaagtgcccgagaaggcgacggagaacgaggaagaggtagctgaggaaggcgaagaaactcccaagaaaggtaagcggactcggagagccagctccaagaagcagcgaggcggagactcagctgtgaagaagccgaagaaggaagcagaggtggaaaagaaggagaaggagccggttactccggtgagtgagaggcctactagggagaggaaagtagttgagagatactcagctcccgagagtggaaggtcttcggccacgaaaccattgaacattgagaagggtcgtggaactcagctcaaggatattccaaacgtggctttcaagttatcgaagagaaaaccggatgacaatcttcaattactgcacacaattctttttgggaagaaagcaaagtctcacagtttaaagagaaacattgtccagttttcaggttatgtgtgggctgagaatgagcaagaaaaacagaggacaagggtaaaggagaagcttgataagtgtgttaaagaaaagttaatggatttttgtgacgtgcttaatattcaaatcaataaagctggcacaaagaaggaagaactttctgcaaagttattggagttcttggaatccccacatgctacaactgatgttttgcttgctgaaaaggaacagaaagggcaaaagcgtaagaagaaggttacaccaagtaagattgcaggttctggagaaggatcaccggaaactccagccaagaaacaaaaggacacacccagtgttgaaaagaatgaagagtcagatccaaaggatgatcctcttgaagaagatgatgatgacaggatgaatgaagaaactgatggggataaatctgatgaagaggaagatgaaccaaaggaccaggtgtcaagtccaaaaagttcatccaaagatgtgaaggagggctcaaaggttaaaactggggggaagtcaacaccagctaagaagaaaacgcctgcaaaatctgtgaaaactcctacagagtctgaaaagaaatctcgttctacttcaaaaagaggtgcaagtgatgctgatggagcttctggttctaaagcaaagggatctgtgaaaaaacagaaaactgaaaaggaaagcccaaaggatagtaagacaaaaaccactagcaaaaaacagtcgagcaagtccccagccaaggttccagcaaaggatcaagtgaaaggcaaaactagcaagaaggcaaaggcagagcccacaaaagaagatgtgcatgctgtaattgttgacattctgaaggaagtggacttcaatactgcaactttatctgatattctcaggcaacttggtacccactttggtattgatttaatgcatagaaaagcggaggtgaaggacataattacggatgtaattaataacatgactgatgaggaagaagaggatgaagaagaggaagcagctggtgatgattcagagaaagaggaccatgatgatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C

Protein Analysis

532

Amino Acids

59.05

Weight (kDa)

5.57

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48710 AT5G63550 AT5G63550
fragaria_vesca	FvH4_5g08751 FvH4_5g08751 FvH4_5g08751
malus_domestica	MD06G1137600.v1.1 MD14G1152400.v1.1
prunus_persica	Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1 Prupe.5G147400_v2.0.a1
pyrus_communis	pycom06g12880 pycom14g12680
rosa_chinensis	RchiOBHm_Chr7g0189521
rosa_laevigata	RLG00000004604
rosa_multiflora	Rmu_sc0001924.1_g000009
rosa_roxburghii	Rroxscaffold_3G00265330 Rroxscaffold_6G00405120
rosa_rugosa	Rorug06G0498600 Rorug06G0498700
rosa_samantha	Rh7AG103600 Rh7BG106100 Rh7CG108300 Rh7DG105700
rosa_wichuraiana	Rw7G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	815
Acc65I	GGTACC	1 cut(s)	1445
AccB1I	GGYRCC	1 cut(s)	1445
AciI	CCGC	3 cut(s)	205, 240, 1481
AclWI	GGATC	6 cut(s)	129, 847, 899, 911, 1210, 1317
AcoI	YGGCCR	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	1412
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	1 cut(s)	1447
AfiI	CCNNNNNNNGG	3 cut(s)	197, 371, 1294
AgsI	TTSAA	9 cut(s)	71, 400, 454, 488, 674, 887, 926, 1152, 1408
AhdI	GACNNNNNGTC	1 cut(s)	1006
AjiI	CACGTC	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	1002
Alw26I	GTCTC	2 cut(s)	237, 531
AlwI	GGATC	6 cut(s)	129, 847, 899, 911, 1210, 1317
AlwNI	CAGNNNCTG	2 cut(s)	830, 1127
Ama87I	CYCGRG	2 cut(s)	137, 365
AoxI	GGCC	2 cut(s)	323, 384
ApeKI	GCWGC	2 cut(s)	232, 1556
AseI	ATTAAT	1 cut(s)	1512
Asp700I	GAANNNNTTC	1 cut(s)	379
Asp718I	GGTACC	1 cut(s)	1445
AspS9I	GGNCC	2 cut(s)	1000, 1582
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	4 cut(s)	325, 834, 1498, 1574
AvaI	CYCGRG	2 cut(s)	137, 365
AvaII	GGWCC	2 cut(s)	1000, 1582
BaeGI	GKGCMC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	1445
BanII	GRGCYC	3 cut(s)	99, 1049, 1353
BbsI	GAAGAC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	244, 1568
BccI	CCATC	2 cut(s)	956, 1169
BciT130I	CCWGG	1 cut(s)	1004
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	237, 531
BfaI	CTAG	4 cut(s)	17, 330, 1263, 1329
BfmI	CTRYAG	1 cut(s)	1119
BfuAI	ACCTGC	1 cut(s)	815
BisI	GCNGC	2 cut(s)	233, 1557
BlsI	GCNGC	2 cut(s)	234, 1558
Bme1390I	CCNGG	2 cut(s)	99, 1004
Bme18I	GGWCC	2 cut(s)	1000, 1582
BmeRI	GACNNNNNGTC	1 cut(s)	1006
BmeT110I	CYCGRG	2 cut(s)	137, 365
BmgBI	CACGTC	1 cut(s)	661
BmgT120I	GGNCC	2 cut(s)	1000, 1582
BmiI	GGNNCC	4 cut(s)	96, 300, 1299, 1447
BmrFI	CCNGG	2 cut(s)	99, 1004
BmrI	ACTGGG	2 cut(s)	873, 1071
BmsI	GCATC	2 cut(s)	1159, 1582
BmuI	ACTGGG	2 cut(s)	873, 1071
BpiI	GAAGAC	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	3 cut(s)	96, 837, 852
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	1293
BsaWI	WCCGGW	3 cut(s)	310, 472, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 371, 1294
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	3 cut(s)	553, 879, 1066
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	1004
BseDI	CCNNGG	1 cut(s)	1293
BseGI	GGATG	6 cut(s)	481, 919, 951, 1025, 1510, 1546
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	3 cut(s)	197, 371, 1294
BseMII	CTCAG	6 cut(s)	162, 261, 372, 437, 567, 1447
BseNI	ACTGG	3 cut(s)	553, 879, 1066
BseRI	GAGGAG	3 cut(s)	35, 95, 107
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	244, 1568
BseYI	CCCAGC	1 cut(s)	1288
BsgI	GTGCAG	1 cut(s)	479
BshFI	GGCC	2 cut(s)	325, 386
BshNI	GGYRCC	1 cut(s)	1445
BsiHKCI	CYCGRG	2 cut(s)	137, 365
BsiSI	CCGG	7 cut(s)	32, 99, 128, 302, 311, 473, 845
BslFI	GGGAC	1 cut(s)	1270
BslI	CCNNNNNNNGG	3 cut(s)	197, 371, 1294
BsmAI	GTCTC	2 cut(s)	237, 531
BsmFI	GGGAC	1 cut(s)	1270
BsnI	GGCC	2 cut(s)	325, 386
BsoBI	CYCGRG	2 cut(s)	137, 365
Bsp1286I	GDGCHC	4 cut(s)	99, 138, 1049, 1353
Bsp143I	GATC	6 cut(s)	121, 839, 904, 916, 1202, 1309
BspACI	CCGC	3 cut(s)	205, 240, 1481
BspANI	GGCC	2 cut(s)	325, 386
BspCNI	CTCAG	6 cut(s)	163, 260, 371, 436, 568, 1446
BspLI	GGNNCC	4 cut(s)	96, 300, 1299, 1447
BspMI	ACCTGC	1 cut(s)	815
BspPI	GGATC	6 cut(s)	129, 847, 899, 911, 1210, 1317
BspT107I	GGYRCC	1 cut(s)	1445
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	3 cut(s)	553, 879, 1066
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	1293
BssMI	GATC	6 cut(s)	121, 839, 904, 916, 1202, 1309
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	1293
Bst2UI	CCWGG	1 cut(s)	1004
Bst4CI	ACNGT	2 cut(s)	533, 1275
Bst6I	CTCTTC	7 cut(s)	105, 156, 458, 891, 975, 1530, 1542
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	1169
BstC8I	GCNNGC	5 cut(s)	220, 688, 765, 1098, 1371
BstDEI	CTNAG	8 cut(s)	171, 247, 358, 423, 576, 1083, 1433, 1596
BstF5I	GGATG	6 cut(s)	481, 919, 951, 1025, 1510, 1546
BstKTI	GATC	6 cut(s)	124, 842, 907, 919, 1205, 1312
BstMAI	GTCTC	2 cut(s)	237, 531
BstMBI	GATC	6 cut(s)	121, 839, 904, 916, 1202, 1309
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 133, 1169, 1178, 1329
BstNI	CCWGG	1 cut(s)	1004
BstNSI	RCATGY	2 cut(s)	746, 1373
BstSCI	CCNGG	2 cut(s)	97, 1002
BstSFI	CTRYAG	1 cut(s)	1119
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	244, 1568
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	3 cut(s)	121, 904, 1202
BstYI	RGATCY	3 cut(s)	121, 904, 1202
BsuRI	GGCC	2 cut(s)	325, 386
BtrI	CACGTC	1 cut(s)	661
BtsCI	GGATG	6 cut(s)	481, 919, 951, 1025, 1510, 1546
BtsIMutI	CAGTG	1 cut(s)	886
BveI	ACCTGC	1 cut(s)	815
Cac8I	GCNNGC	5 cut(s)	220, 688, 765, 1098, 1371
CaiI	CAGNNNCTG	2 cut(s)	830, 1127
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	1000, 1582
CsiI	ACCWGGT	1 cut(s)	1002
Csp6I	GTAC	1 cut(s)	1446
CviAII	CATG	4 cut(s)	743, 1370, 1519, 1586
CviQI	GTAC	1 cut(s)	1446
DdeI	CTNAG	8 cut(s)	171, 247, 358, 423, 576, 1083, 1433, 1596
DpnI	GATC	6 cut(s)	123, 841, 906, 918, 1204, 1311
DpnII	GATC	6 cut(s)	121, 839, 904, 916, 1202, 1309
DraI	TTTAAA	1 cut(s)	537
DraIII	CACNNNGTG	1 cut(s)	881
DriI	GACNNNNNGTC	1 cut(s)	1006
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	7 cut(s)	105, 156, 458, 891, 975, 1530, 1542
Eam1105I	GACNNNNNGTC	1 cut(s)	1006
EarI	CTCTTC	7 cut(s)	105, 156, 458, 891, 975, 1530, 1542
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	1293
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	3 cut(s)	99, 1049, 1353
Eco47I	GGWCC	2 cut(s)	1000, 1582
Eco57I	CTGAAG	1 cut(s)	1412
Eco88I	CYCGRG	2 cut(s)	137, 365
EcoRII	CCWGG	1 cut(s)	1002
EcoT14I	CCWWGG	1 cut(s)	1293
EcoT22I	ATGCAT	1 cut(s)	1473
EcoT38I	GRGCYC	3 cut(s)	99, 1049, 1353
ErhI	CCWWGG	1 cut(s)	1293
FaeI	CATG	4 cut(s)	746, 1373, 1522, 1589
FaiI	YATR	7 cut(s)	567, 744, 1371, 1473, 1496, 1520, 1587
FaqI	GGGAC	1 cut(s)	1270
FatI	CATG	4 cut(s)	742, 1369, 1518, 1585
Fnu4HI	GCNGC	2 cut(s)	233, 1557
FokI	GGATG	6 cut(s)	488, 926, 958, 1012, 1517, 1553
FriOI	GRGCYC	3 cut(s)	99, 1049, 1353
Fsp4HI	GCNGC	2 cut(s)	233, 1557
FspBI	CTAG	4 cut(s)	17, 330, 1263, 1329
GluI	GCNGC	2 cut(s)	233, 1557
GsaI	CCCAGC	1 cut(s)	1292
GsuI	CTGGAG	3 cut(s)	96, 837, 852
HaeIII	GGCC	2 cut(s)	325, 386
HapII	CCGG	7 cut(s)	32, 99, 128, 302, 311, 473, 845
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	746, 1373, 1522, 1589
HincII	GTYRAC	2 cut(s)	1074, 1384
HindII	GTYRAC	2 cut(s)	1074, 1384
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	6 cut(s)	208, 245, 734, 899, 1124, 1568
HpaII	CCGG	7 cut(s)	32, 99, 128, 302, 311, 473, 845
HphI	GGTGA	4 cut(s)	325, 834, 1498, 1574
Hpy166II	GTNNAC	3 cut(s)	1074, 1384, 1402
Hpy188I	TCNGA	8 cut(s)	10, 213, 904, 976, 1129, 1392, 1426, 1573
Hpy188III	TCNNGA	3 cut(s)	365, 831, 923
Hpy8I	GTNNAC	3 cut(s)	1074, 1384, 1402
Hpy99I	CGWCG	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	533, 1275
HpyCH4IV	ACGT	2 cut(s)	444, 660
HpyCH4V	TGCA	8 cut(s)	496, 713, 824, 1100, 1163, 1369, 1415, 1471
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 133, 1169, 1178, 1329
HpyF3I	CTNAG	8 cut(s)	171, 247, 358, 423, 576, 1083, 1433, 1596
HpySE526I	ACGT	2 cut(s)	444, 660
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	746, 1373, 1522, 1589
KpnI	GGTACC	1 cut(s)	1449
Kzo9I	GATC	6 cut(s)	121, 839, 904, 916, 1202, 1309
LmnI	GCTCC	6 cut(s)	49, 94, 227, 298, 367, 1178
Lsp1109I	GCAGC	2 cut(s)	244, 1568
LweI	GCATC	2 cut(s)	1159, 1582
MabI	ACCWGGT	1 cut(s)	1002
MaeI	CTAG	4 cut(s)	17, 330, 1263, 1329
MaeII	ACGT	2 cut(s)	444, 660
MaeIII	GTNAC	3 cut(s)	304, 656, 805
MalI	GATC	6 cut(s)	123, 841, 906, 918, 1204, 1311
MboI	GATC	6 cut(s)	121, 839, 904, 916, 1202, 1309
MflI	RGATCY	3 cut(s)	121, 904, 1202
MhlI	GDGCHC	4 cut(s)	99, 138, 1049, 1353
MluCI	AATT	5 cut(s)	488, 501, 1377, 1497, 1509
MlyI	GAGTC	4 cut(s)	202, 239, 908, 1133
Mph1103I	ATGCAT	1 cut(s)	1473
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	7 cut(s)	536, 633, 644, 666, 1056, 1466, 1512
MslI	CAYNNNNRTG	1 cut(s)	1590
MspA1I	CMGCKG	2 cut(s)	251, 1559
MspI	CCGG	7 cut(s)	32, 99, 128, 302, 311, 473, 845
MspR9I	CCNGG	2 cut(s)	99, 1004
MvaI	CCWGG	1 cut(s)	1004
MwoI	GCNNNNNNNGC	5 cut(s)	11, 133, 1169, 1178, 1329
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	6 cut(s)	121, 839, 904, 916, 1202, 1309
NlaIII	CATG	4 cut(s)	746, 1373, 1522, 1589
NlaIV	GGNNCC	4 cut(s)	96, 300, 1299, 1447
NmuCI	GTSAC	1 cut(s)	656
NsiI	ATGCAT	1 cut(s)	1473
NspI	RCATGY	2 cut(s)	746, 1373
PaeI	GCATGC	1 cut(s)	1373
PceI	AGGCCT	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	734, 1568
PkrI	GCNGC	2 cut(s)	234, 1558
PleI	GAGTC	4 cut(s)	202, 239, 907, 1132
PpsI	GAGTC	4 cut(s)	202, 239, 907, 1132
PshBI	ATTAAT	1 cut(s)	1512
Psp6I	CCWGG	1 cut(s)	1002
PspFI	CCCAGC	1 cut(s)	1288
PspGI	CCWGG	1 cut(s)	1002
PspN4I	GGNNCC	4 cut(s)	96, 300, 1299, 1447
PspPI	GGNCC	2 cut(s)	1000, 1582
PstNI	CAGNNNCTG	2 cut(s)	830, 1127
PsuI	RGATCY	3 cut(s)	121, 904, 1202
PvuII	CAGCTG	2 cut(s)	251, 1559
RsaI	GTAC	1 cut(s)	1447
RsaNI	GTAC	1 cut(s)	1446
RseI	CAYNNNNRTG	1 cut(s)	1590
SaqAI	TTAA	7 cut(s)	536, 633, 644, 666, 1056, 1466, 1512
SatI	GCNGC	2 cut(s)	233, 1557
Sau3AI	GATC	6 cut(s)	121, 839, 904, 916, 1202, 1309
Sau96I	GGNCC	2 cut(s)	1000, 1582
SchI	GAGTC	4 cut(s)	202, 239, 908, 1133
ScrFI	CCNGG	2 cut(s)	99, 1004
SduI	GDGCHC	4 cut(s)	99, 138, 1049, 1353
SexAI	ACCWGGT	1 cut(s)	1002
SfaNI	GCATC	2 cut(s)	1159, 1582
SfcI	CTRYAG	1 cut(s)	1119
SinI	GGWCC	2 cut(s)	1000, 1582
SmiMI	CAYNNNNRTG	1 cut(s)	1590
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	1373
Sse9I	AATT	5 cut(s)	488, 501, 1377, 1497, 1509
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	3 cut(s)	205, 240, 1481
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	4 cut(s)	17, 330, 1263, 1329
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	97, 1002
StyI	CCWWGG	1 cut(s)	1293
TaaI	ACNGT	2 cut(s)	533, 1275
TaiI	ACGT	2 cut(s)	447, 663
TaqI	TCGA	2 cut(s)	461, 1277
TasI	AATT	5 cut(s)	488, 501, 1377, 1497, 1509
TfiI	GAWTC	2 cut(s)	734, 1568
Tru1I	TTAA	7 cut(s)	536, 633, 644, 666, 1056, 1466, 1512
Tru9I	TTAA	7 cut(s)	536, 633, 644, 666, 1056, 1466, 1512
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	2 cut(s)	232, 1556
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	7 cut(s)	909, 962, 966, 993, 1005, 1014, 1557
TspGWI	ACGGA	2 cut(s)	164, 1517
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	2 cut(s)	1000, 1582
VspI	ATTAAT	1 cut(s)	1512
XceI	RCATGY	2 cut(s)	746, 1373
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	4 cut(s)	17, 330, 1263, 1329
Zsp2I	ATGCAT	1 cut(s)	1473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.