AT3G48780

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18089020 .. 18093252
4233 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48780.2

Sequence Viewer

Length: 1470 bp
ATGATTACGATCCCATACCTTACCGCTGTATCAACGTATTTCAGCTACGGCTTGCTTTTCGCGTTTGGTCAGCTTCGCGATTACTCTCGCCTAATCTTCGATTGGTGGCGCACCAACAATCTCCAGGGATACGCTCCGATCTGCTTGGCGCATGAGGATTTCTACATCCGACGATTGTATCATCGGATTCAGGACTGTTTTGGACGTCCCATTTCAAGTGCACCTGATGCTTGGATTGATGTGGTTGAGAGAGTCTCTGACGATAACAACAAGACGTTAAAGCGAACTACAAAGACTAGCAGGTGCCTTAATTTGGGTTCCTACAATTATCTTGGATTTGGTTCTTTCGATGAATATTGCACGCCTCGTGTCATTGAGTCTCTGAAGAAATTTTCAGCAAGTACATGTAGCTCTCGCGTTGATGCAGGAACTACATCTGTGCATGCAGAACTTGAGGATTGTGTTGCTAAATATGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCATTCCCGTCTTGATTGGAAAGGGAGGGTTGATAATAAGCGATTCTTTGAACCATACTTCGATTGTCAACGGCGCTCGAGGTTCAGGAGCTACTATCCGTGTTTTCCAACACAACACACCTGGTCATCTGGAAAAAGTATTGAAAGAACAAATCGCCGAGGGACAACCCAGGACGCATAGACCGTGGAAGAAAATTATTGTTGTTGTTGAGGGTATTTACAGCATGGAAGGGGAAATTTGTCATCTGCCCGAGATTGTTTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGACGAAGCTCACAGCATTGGAGCAATTGGCAAGACAGGAAGAGGTGTTTGTGAACTCCTTGGAGTTGACACTTCTGATGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGTCTTGTGGTGGCTATATTGCGGGATCAAAGGACCTCATCCAATATTTGAAGCACCAATGCCCGGCTCACCTTTACGCCACATCAATTTCAACTCCTTCCGCGACACAAATCATATCGGCGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAGGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAAGTTCTTGGAGACAATGATTCACCAGTCATGCCAATAATGCTTTACAATCCAGCAAAAATTCCAGCATTCTCAAGGGAATGTTTGCGAGAAAACTTGGCGGTGGTGGTCGTCGGTTTCCCAGCTACACCCCTATTGCTAGCCAGGGCTCGTATTTGCATATCCGCATCTCACTCAAGAGAAGATCTTATAAAAGCCCTACAGGTTATAAGCAAAGCAGGTGACCTTACCGGGATCAAATATTTTCCGGCAGCTCCAAAAAAGCAAGAAGTAGAGAAAAATGGCATCAAATTGGATTAA

Protein Analysis

489

Amino Acids

53.86

Weight (kDa)

8.72

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 102 - 460 7.7e-52 Aminotransferase class I and II
Beta_elim_lyase PF01212 148 - 334 3.1e-09 Beta-eliminating lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1361, 1379
AarI CACCTGC 2 cut(s) 291, 1379
AatII GACGTC 1 cut(s) 208
Acc36I ACCTGC 3 cut(s) 291, 493, 1379
AccB1I GGYRCC 1 cut(s) 303
AccII CGCG 4 cut(s) 62, 78, 417, 1043
AciI CCGC 5 cut(s) 24, 962, 1041, 1271, 1335
AclWI GGATC 3 cut(s) 4, 973, 1412
AcsI RAATTY 3 cut(s) 389, 765, 1230
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 3 cut(s) 313, 1003, 1081
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 8 cut(s) 216, 580, 673, 792, 991, 1032, 1092, 1172
AjnI CCWGG 4 cut(s) 123, 649, 698, 1313
AluBI AGCT 7 cut(s) 45, 73, 411, 620, 833, 1295, 1424
AluI AGCT 7 cut(s) 45, 73, 411, 620, 833, 1295, 1424
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 3 cut(s) 259, 384, 1176
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 3 cut(s) 4, 973, 1412
Ama87I CYCGRG 2 cut(s) 606, 779
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 488, 1421
ApoI RAATTY 3 cut(s) 389, 765, 1230
AspLEI GCGC 3 cut(s) 111, 151, 605
AspS9I GGNCC 1 cut(s) 973
AsuC2I CCSGG 2 cut(s) 1004, 1402
AsuHPI GGTGA 3 cut(s) 1001, 1185, 1403
AsuNHI GCTAGC 1 cut(s) 1309
AvaI CYCGRG 2 cut(s) 606, 779
AvaII GGWCC 1 cut(s) 973
BaeGI GKGCMC 2 cut(s) 223, 1105
BaeI ACNNNNGTAYC 4 cut(s) 12, 45, 161, 194
BanI GGYRCC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 1321
BauI CACGAG 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 475, 1433
BccI CCATC 3 cut(s) 910, 1079, 1156
BceAI ACGGC 2 cut(s) 64, 616
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BciT130I CCWGG 4 cut(s) 125, 651, 700, 1315
BciVI GTATCC 1 cut(s) 122
BcnI CCSGG 2 cut(s) 1004, 1402
BcoDI GTCTC 3 cut(s) 259, 384, 1176
BfaI CTAG 2 cut(s) 297, 1310
BfmI CTRYAG 1 cut(s) 1370
BfoI RGCGCY 1 cut(s) 606
BfuAI ACCTGC 3 cut(s) 291, 493, 1379
BfuI GTATCC 1 cut(s) 122
BglII AGATCT 1 cut(s) 1354
BisI GCNGC 2 cut(s) 489, 1422
BlsI GCNGC 2 cut(s) 490, 1423
Bme1390I CCNGG 6 cut(s) 125, 651, 700, 1004, 1315, 1402
Bme18I GGWCC 1 cut(s) 973
BmeT110I CYCGRG 2 cut(s) 606, 779
BmgT120I GGNCC 1 cut(s) 973
BmiI GGNNCC 2 cut(s) 305, 319
BmrFI CCNGG 6 cut(s) 125, 651, 700, 1004, 1315, 1402
BmsI GCATC 4 cut(s) 217, 412, 1346, 1464
BmtI GCTAGC 1 cut(s) 1313
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 1 cut(s) 107
BpuEI CTTGAG 3 cut(s) 473, 1228, 1330
BpuMI CCSGG 2 cut(s) 1004, 1402
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 7 cut(s) 124, 687, 698, 713, 883, 1075, 1314
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 1003, 1081
Bse1I ACTGG 1 cut(s) 1196
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 4 cut(s) 125, 651, 700, 1315
BseDI CCNNGG 7 cut(s) 124, 687, 698, 713, 883, 1075, 1314
BseGI GGATG 3 cut(s) 165, 978, 1090
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 313, 1003, 1081
BseMII CTCAG 1 cut(s) 1140
BseNI ACTGG 1 cut(s) 1196
BseSI GKGCMC 2 cut(s) 223, 1105
BseXI GCAGC 2 cut(s) 475, 1433
BseYI CCCAGC 1 cut(s) 1291
Bsh1236I CGCG 4 cut(s) 62, 78, 417, 1043
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 223
BsiHKCI CYCGRG 2 cut(s) 606, 779
BsiSI CCGG 3 cut(s) 1004, 1401, 1418
BslFI GGGAC 2 cut(s) 192, 705
BslI CCNNNNNNNGG 3 cut(s) 313, 1003, 1081
BsmAI GTCTC 3 cut(s) 259, 384, 1176
BsmFI GGGAC 2 cut(s) 192, 705
BsmI GAATGC 1 cut(s) 1238
BsoBI CYCGRG 2 cut(s) 606, 779
Bsp1286I GDGCHC 3 cut(s) 223, 1105, 1321
Bsp143I GATC 5 cut(s) 9, 138, 965, 1354, 1404
Bsp68I TCGCGA 1 cut(s) 78
BspACI CCGC 5 cut(s) 24, 962, 1041, 1271, 1335
BspCNI CTCAG 1 cut(s) 1141
BspFNI CGCG 4 cut(s) 62, 78, 417, 1043
BspLI GGNNCC 2 cut(s) 305, 319
BspMI ACCTGC 3 cut(s) 291, 493, 1379
BspOI GCTAGC 1 cut(s) 1313
BspPI GGATC 3 cut(s) 4, 973, 1412
BspT107I GGYRCC 1 cut(s) 303
BsrI ACTGG 1 cut(s) 1196
BssECI CCNNGG 7 cut(s) 124, 687, 698, 713, 883, 1075, 1314
BssMI GATC 5 cut(s) 9, 138, 965, 1354, 1404
BssNI GRCGYC 1 cut(s) 205
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 883, 1075
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 4 cut(s) 125, 651, 700, 1315
Bst4CI ACNGT 2 cut(s) 197, 714
Bst6I CTCTTC 1 cut(s) 859
BstACI GRCGYC 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 4 cut(s) 53, 362, 444, 1311
BstDEI CTNAG 1 cut(s) 1149
BstDSI CCRYGG 1 cut(s) 713
BstEII GGTNACC 1 cut(s) 1391
BstENI CCTNNNNNAGG 1 cut(s) 1079
BstF5I GGATG 3 cut(s) 165, 978, 1090
BstFNI CGCG 4 cut(s) 62, 78, 417, 1043
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 3 cut(s) 111, 151, 605
BstKTI GATC 5 cut(s) 12, 141, 968, 1357, 1407
BstMAI GTCTC 3 cut(s) 259, 384, 1176
BstMBI GATC 5 cut(s) 9, 138, 965, 1354, 1404
BstMWI GCNNNNNNNGC 2 cut(s) 227, 1210
BstNI CCWGG 4 cut(s) 125, 651, 700, 1315
BstNSI RCATGY 2 cut(s) 408, 446
BstPI GGTNACC 1 cut(s) 1391
BstSCI CCNGG 6 cut(s) 123, 649, 698, 1002, 1313, 1400
BstSFI CTRYAG 1 cut(s) 1370
BstSLI GKGCMC 2 cut(s) 223, 1105
BstUI CGCG 4 cut(s) 62, 78, 417, 1043
BstV1I GCAGC 2 cut(s) 475, 1433
BstX2I RGATCY 1 cut(s) 1354
BstYI RGATCY 1 cut(s) 1354
BsuI GTATCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 713
BtsCI GGATG 3 cut(s) 165, 978, 1090
BtuMI TCGCGA 1 cut(s) 78
BveI ACCTGC 3 cut(s) 291, 493, 1379
Cac8I GCNNGC 4 cut(s) 53, 362, 444, 1311
CfoI GCGC 3 cut(s) 111, 151, 605
Cfr13I GGNCC 1 cut(s) 973
CseI GACGC 1 cut(s) 712
CsiI ACCWGGT 1 cut(s) 649
Csp6I GTAC 1 cut(s) 402
CviAII CATG 6 cut(s) 152, 405, 443, 505, 754, 1201
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 1 cut(s) 1149
DpnI GATC 5 cut(s) 11, 140, 967, 1356, 1406
DpnII GATC 5 cut(s) 9, 138, 965, 1354, 1404
Eam1104I CTCTTC 1 cut(s) 859
EarI CTCTTC 1 cut(s) 859
Eco130I CCWWGG 2 cut(s) 883, 1075
Eco24I GRGCYC 1 cut(s) 1321
Eco47I GGWCC 1 cut(s) 973
Eco57I CTGAAG 1 cut(s) 404
Eco88I CYCGRG 2 cut(s) 606, 779
Eco91I GGTNACC 1 cut(s) 1391
EcoNI CCTNNNNNAGG 1 cut(s) 1079
EcoO109I RGGNCCY 1 cut(s) 973
EcoO65I GGTNACC 1 cut(s) 1391
EcoRII CCWGG 4 cut(s) 123, 649, 698, 1313
EcoT14I CCWWGG 2 cut(s) 883, 1075
EcoT38I GRGCYC 1 cut(s) 1321
ErhI CCWWGG 2 cut(s) 883, 1075
FaeI CATG 6 cut(s) 155, 408, 446, 508, 757, 1204
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FaqI GGGAC 2 cut(s) 192, 705
FatI CATG 6 cut(s) 151, 404, 442, 504, 753, 1200
FauI CCCGC 1 cut(s) 955
FauNDI CATATG 1 cut(s) 814
Fnu4HI GCNGC 2 cut(s) 489, 1422
FokI GGATG 3 cut(s) 152, 965, 1097
FriOI GRGCYC 1 cut(s) 1321
Fsp4HI GCNGC 2 cut(s) 489, 1422
FspBI CTAG 2 cut(s) 297, 1310
GlaI GCGC 3 cut(s) 110, 150, 604
GluI GCNGC 2 cut(s) 489, 1422
GsaI CCCAGC 1 cut(s) 1295
GsuI CTGGAG 1 cut(s) 107
HaeII RGCGCY 1 cut(s) 606
HapII CCGG 3 cut(s) 1004, 1401, 1418
HgaI GACGC 1 cut(s) 712
HhaI GCGC 3 cut(s) 111, 151, 605
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 6 cut(s) 155, 408, 446, 508, 757, 1204
Hin6I GCGC 3 cut(s) 109, 149, 603
HinP1I GCGC 3 cut(s) 109, 149, 603
HincII GTYRAC 2 cut(s) 598, 892
HindII GTYRAC 2 cut(s) 598, 892
HinfI GANTC 5 cut(s) 187, 252, 377, 572, 1190
HpaII CCGG 3 cut(s) 1004, 1401, 1418
HphI GGTGA 3 cut(s) 1001, 1185, 1403
Hpy166II GTNNAC 6 cut(s) 221, 598, 820, 878, 892, 907
Hpy188I TCNGA 7 cut(s) 138, 170, 186, 259, 384, 479, 901
Hpy188III TCNNGA 7 cut(s) 77, 191, 541, 615, 659, 928, 1347
Hpy8I GTNNAC 6 cut(s) 221, 598, 820, 878, 892, 907
Hpy99I CGWCG 2 cut(s) 174, 1286
HpyAV CCTTC 2 cut(s) 752, 1047
HpyCH4III ACNGT 2 cut(s) 197, 714
HpyCH4IV ACGT 3 cut(s) 35, 205, 275
HpyCH4V TGCA 9 cut(s) 221, 360, 425, 442, 446, 515, 798, 1156, 1329
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 1210
HpyF3I CTNAG 1 cut(s) 1149
HpySE526I ACGT 3 cut(s) 35, 205, 275
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 6 cut(s) 155, 408, 446, 508, 757, 1204
HspAI GCGC 3 cut(s) 109, 149, 603
Kzo9I GATC 5 cut(s) 9, 138, 965, 1354, 1404
LmnI GCTCC 4 cut(s) 139, 617, 845, 1429
Lsp1109I GCAGC 2 cut(s) 475, 1433
LweI GCATC 4 cut(s) 217, 412, 1346, 1464
MabI ACCWGGT 1 cut(s) 649
MaeI CTAG 2 cut(s) 297, 1310
MaeII ACGT 3 cut(s) 35, 205, 275
MaeIII GTNAC 1 cut(s) 1391
MalI GATC 5 cut(s) 11, 140, 967, 1356, 1406
MboI GATC 5 cut(s) 9, 138, 965, 1354, 1404
MboII GAAGA 6 cut(s) 88, 397, 730, 876, 1171, 1364
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 1 cut(s) 1354
MhlI GDGCHC 3 cut(s) 223, 1105, 1321
MluCI AATT 9 cut(s) 310, 325, 389, 723, 765, 849, 1026, 1230, 1460
MlyI GAGTC 2 cut(s) 261, 386
MmeI TCCRAC 3 cut(s) 193, 457, 661
MseI TTAA 3 cut(s) 278, 309, 1468
MslI CAYNNNNRTG 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 3 cut(s) 1004, 1401, 1418
MspR9I CCNGG 6 cut(s) 125, 651, 700, 1004, 1315, 1402
MunI CAATTG 1 cut(s) 849
Mva1269I GAATGC 1 cut(s) 1238
MvaI CCWGG 4 cut(s) 125, 651, 700, 1315
MvnI CGCG 4 cut(s) 62, 78, 417, 1043
MwoI GCNNNNNNNGC 2 cut(s) 227, 1210
NciI CCSGG 2 cut(s) 1004, 1402
NdeI CATATG 1 cut(s) 814
NdeII GATC 5 cut(s) 9, 138, 965, 1354, 1404
NheI GCTAGC 1 cut(s) 1309
NlaIII CATG 6 cut(s) 155, 408, 446, 508, 757, 1204
NlaIV GGNNCC 2 cut(s) 305, 319
NmeAIII GCCGAG 2 cut(s) 503, 712
NmuCI GTSAC 1 cut(s) 1391
NruI TCGCGA 1 cut(s) 78
NspI RCATGY 2 cut(s) 408, 446
PaeI GCATGC 1 cut(s) 446
PaeR7I CTCGAG 1 cut(s) 606
PaqCI CACCTGC 2 cut(s) 291, 1379
PciI ACATGT 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 710
PctI GAATGC 1 cut(s) 1238
PfeI GAWTC 3 cut(s) 187, 572, 1190
PkrI GCNGC 2 cut(s) 490, 1423
PleI GAGTC 2 cut(s) 260, 385
PpsI GAGTC 2 cut(s) 260, 385
PpuMI RGGWCCY 1 cut(s) 973
PscI ACATGT 1 cut(s) 404
PsiI TTATAA 2 cut(s) 1361, 1379
Psp5II RGGWCCY 1 cut(s) 973
Psp6I CCWGG 4 cut(s) 123, 649, 698, 1313
PspEI GGTNACC 1 cut(s) 1391
PspFI CCCAGC 1 cut(s) 1291
PspGI CCWGG 4 cut(s) 123, 649, 698, 1313
PspN4I GGNNCC 2 cut(s) 305, 319
PspPI GGNCC 1 cut(s) 973
PspPPI RGGWCCY 1 cut(s) 973
PspXI VCTCGAGB 1 cut(s) 606
PsuI RGATCY 1 cut(s) 1354
RruI TCGCGA 1 cut(s) 78
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 1 cut(s) 914
SaqAI TTAA 3 cut(s) 278, 309, 1468
SatI GCNGC 2 cut(s) 489, 1422
Sau3AI GATC 5 cut(s) 9, 138, 965, 1354, 1404
Sau96I GGNCC 1 cut(s) 973
SchI GAGTC 2 cut(s) 261, 386
ScrFI CCNGG 6 cut(s) 125, 651, 700, 1004, 1315, 1402
SduI GDGCHC 3 cut(s) 223, 1105, 1321
SexAI ACCWGGT 1 cut(s) 649
SfaNI GCATC 4 cut(s) 217, 412, 1346, 1464
SfcI CTRYAG 1 cut(s) 1370
Sfr274I CTCGAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 973
SlaI CTCGAG 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 4 cut(s) 452, 606, 1243, 1345
SmoI CTYRAG 4 cut(s) 452, 606, 1243, 1345
SphI GCATGC 1 cut(s) 446
Sse9I AATT 9 cut(s) 310, 325, 389, 723, 765, 849, 1026, 1230, 1460
SsiI CCGC 5 cut(s) 24, 962, 1041, 1271, 1335
SspI AATATT 3 cut(s) 356, 986, 1412
SspMI CTAG 2 cut(s) 297, 1310
StyD4I CCNGG 6 cut(s) 123, 649, 698, 1002, 1313, 1400
StyI CCWWGG 2 cut(s) 883, 1075
TaaI ACNGT 2 cut(s) 197, 714
TaiI ACGT 3 cut(s) 38, 208, 278
TaqI TCGA 4 cut(s) 99, 348, 590, 607
TasI AATT 9 cut(s) 310, 325, 389, 723, 765, 849, 1026, 1230, 1460
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 3 cut(s) 187, 572, 1190
Tru1I TTAA 3 cut(s) 278, 309, 1468
Tru9I TTAA 3 cut(s) 278, 309, 1468
TseFI GTSAC 1 cut(s) 1391
TseI GCWGC 2 cut(s) 488, 1421
Tsp45I GTSAC 1 cut(s) 1391
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 617
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 973
XagI CCTNNNNNAGG 1 cut(s) 1079
XapI RAATTY 3 cut(s) 389, 765, 1230
XceI RCATGY 2 cut(s) 408, 446
XhoI CTCGAG 1 cut(s) 606
XspI CTAG 2 cut(s) 297, 1310
ZraI GACGTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.