Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007856

Physical Location & Seq

Genomic Coordinates Forward (+)

91322625 .. 91326913

Gene Structure 4289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG696800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTTATGTCACCAACTCTGCTATCCTTCCTGTACTGATTGGAAAGGGAGGTTTGATTGTTAGTGATTCTTTGAATCATAACTCCATTGTTAATGGCGCACGAGGATCTGGAGCATCCATTTGTGTCTTCCAACACAACACTCCATCCCATTTGGATGAGGTTTTAAGAGAACAAATAGCAGAGGGACAACCTAGAACCCGCAGGCCTTGGAAAAAGATTATTGTCATTGTGGAGGGCATATACAGCATGGAAGGGGAGCTTTGCAAACTTCCTGAGATTATAGCAATCTGCAAGAAATATAAGGTCTATACGTATTTGGATGAGGCCCACAGTATTGGAGCTGTAGGAAAATCAGGACGAGGTGTTTGTGAGCTCTTGGGAGTAGATACTGCTGATGTTGATATCATGATGGGAACATTTACCAAATCCTTCGGATCATGTGGTGGCTATATTGCAGGATCCAAGGACCTCATCCAATACCTGAAGTACACTTGCCCTGCTCATCTTTATGCAACTTCCATATCACCACCGGCTGCAGAACAAATAATATCATCCATTAAGGTCTTACTTGGAGAGGATGGTTCTAACAGAGGTGCCCAAAAACTCGCACGAATAAGGGAGAATAGCAACTTTTTCAGGTCAGAACTGCAAAAAATGGGTTTTGAGGTTTTGGGGGATAATGACTCCCCGGTAATGCCAATTATGCTGTACAACCCAGCCAAAATTCCTGCCTTCTCACGGGAGTGCCTCAAACAGAATGTAGCTGTCGTGACAGTAGCCTTTCCTGCAACCCCACTGCTGTTGGCAAGGGCACGTATCTGTATATCTGCTTCTCATACAAGGGAAGACCTACAGAAAGCCTTGGACGTAAGTTCTTACATGACTTTAGACCATCCACTTTCTGTCTTCATGTTCCTAGTATATGCAACTTATATAATAGTTGGGAATATGCCTTTTCATGTGATTTTGTGCATTGACAGTTGGGTCTGTTTCTTTCAGGTTATTGGCAGAGTTGGTGATCTGGTGGGTATAAAATACTTCCCTGCTGAGCCAAAGAAGCTGCAGGAAGAAGAGCCGCTGAAGTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0003674 GO:0003824 GO:0004758 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0016408 GO:0016409 GO:0016454 GO:0016740 GO:0016746 GO:0016747 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

364

Amino Acids

39.96

Weight (kDa)

7.06

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	2 - 290	1.2e-39	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48780 AT3G48780 AT3G48790 AT3G48790 AT5G23670 AT5G23670
fragaria_vesca	FvH4_6g54160
malus_domestica	MD09G1004800.v1.1 MD17G1008800.v1.1
prunus_persica	Prupe.3G312000_v2.0.a1 Prupe.5G144700_v2.0.a1
pyrus_communis	pycom111g00350 pycom17g00370
rosa_chinensis	RchiOBHm_Chr2g0176331
rosa_laevigata	RLG00000022404
rosa_multiflora	Rmu_sc0019886.1_g000001 Rmu_sc0027060.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076560
rosa_rugosa	Rorug02G0593300
rosa_samantha	Rh2AG671800 Rh2BG683300 Rh2CG646000 Rh2DG696800
rosa_wichuraiana	Rw2G055090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	986
AccB1I	GGYRCC	1 cut(s)	596
AciI	CCGC	2 cut(s)	202, 1079
AclWI	GGATC	4 cut(s)	115, 445, 456, 469
AcsI	RAATTY	1 cut(s)	726
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	3 cut(s)	36, 491, 713
AfiI	CCNNNNNNNGG	1 cut(s)	741
AgsI	TTSAA	1 cut(s)	76
AleI	CACNNNNGTG	1 cut(s)	745
AluBI	AGCT	5 cut(s)	262, 344, 376, 767, 1063
AluI	AGCT	5 cut(s)	262, 344, 376, 767, 1063
Alw21I	GWGCWC	1 cut(s)	378
AlwI	GGATC	4 cut(s)	115, 445, 456, 469
AoxI	GGCC	2 cut(s)	206, 327
ApeKI	GCWGC	2 cut(s)	536, 1063
ApoI	RAATTY	1 cut(s)	726
ArsI	GACNNNNNNTTYG	2 cut(s)	351, 383
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	328, 469
AsuC2I	CCSGG	1 cut(s)	692
AsuHPI	GGTGA	3 cut(s)	4, 519, 1031
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	2 cut(s)	601, 817
BamHI	GGATCC	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	817, 849
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	3 cut(s)	121, 855, 901
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	523, 1050
BccI	CCATC	4 cut(s)	154, 406, 575, 903
BcnI	CCSGG	1 cut(s)	692
BfaI	CTAG	2 cut(s)	195, 920
BfmI	CTRYAG	4 cut(s)	345, 537, 854, 1064
BisI	GCNGC	3 cut(s)	537, 1064, 1079
BlpI	GCTNAGC	1 cut(s)	1050
BlsI	GCNGC	3 cut(s)	538, 1065, 1080
Bme1390I	CCNGG	1 cut(s)	692
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	328, 469
BmiI	GGNNCC	2 cut(s)	463, 598
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	3 cut(s)	121, 855, 901
BpmI	CTGGAG	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	1050
BpuMI	CCSGG	1 cut(s)	692
BsaAI	YACGTR	2 cut(s)	315, 818
BsaJI	CCNNGG	4 cut(s)	209, 465, 690, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	741
Bse118I	RCCGGY	1 cut(s)	532
BseDI	CCNNGG	4 cut(s)	209, 465, 690, 864
BseGI	GGATG	8 cut(s)	116, 146, 163, 328, 474, 554, 586, 895
BseLI	CCNNNNNNNGG	1 cut(s)	741
BseMII	CTCAG	2 cut(s)	267, 1041
BseSI	GKGCMC	2 cut(s)	601, 817
BseXI	GCAGC	2 cut(s)	523, 1050
BseYI	CCCAGC	1 cut(s)	718
BshFI	GGCC	2 cut(s)	208, 329
BshNI	GGYRCC	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	533, 692
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	208, 329
Bsp1286I	GDGCHC	3 cut(s)	378, 601, 817
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	4 cut(s)	107, 437, 461, 1021
Bsp1720I	GCTNAGC	1 cut(s)	1050
BspACI	CCGC	2 cut(s)	202, 1079
BspANI	GGCC	2 cut(s)	208, 329
BspCNI	CTCAG	2 cut(s)	268, 1042
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	463, 598
BspMAI	CTGCAG	2 cut(s)	541, 1068
BspPI	GGATC	4 cut(s)	115, 445, 456, 469
BspQI	GCTCTTC	1 cut(s)	1068
BspT107I	GGYRCC	1 cut(s)	596
BsrFI	RCCGGY	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	711
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	4 cut(s)	209, 465, 690, 864
BssMI	GATC	4 cut(s)	107, 437, 461, 1021
BssSI	CACGAG	1 cut(s)	102
BssT1I	CCWWGG	3 cut(s)	209, 465, 864
Bst2BI	CACGAG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	335, 778, 983
Bst6I	CTCTTC	1 cut(s)	1068
BstAUI	TGTACA	1 cut(s)	711
BstBAI	YACGTR	2 cut(s)	315, 818
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	276, 1050
BstF5I	GGATG	8 cut(s)	116, 146, 163, 328, 474, 554, 586, 895
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	4 cut(s)	110, 440, 464, 1024
BstMBI	GATC	4 cut(s)	107, 437, 461, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 706, 788, 1060
BstSCI	CCNGG	1 cut(s)	690
BstSFI	CTRYAG	4 cut(s)	345, 537, 854, 1064
BstSLI	GKGCMC	2 cut(s)	601, 817
BstSNI	TACGTA	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	523, 1050
BstV2I	GAAGAC	3 cut(s)	121, 855, 901
BstX2I	RGATCY	2 cut(s)	107, 461
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	2 cut(s)	107, 461
BsuRI	GGCC	2 cut(s)	208, 329
BtsCI	GGATG	8 cut(s)	116, 146, 163, 328, 474, 554, 586, 895
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	797
Cac8I	GCNNGC	1 cut(s)	206
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	2 cut(s)	328, 469
Csp6I	GTAC	3 cut(s)	35, 490, 712
CspCI	CAANNNNNGTGG	2 cut(s)	786, 821
CviAII	CATG	6 cut(s)	250, 409, 441, 883, 913, 962
CviQI	GTAC	3 cut(s)	35, 490, 712
DdeI	CTNAG	2 cut(s)	276, 1050
DpnI	GATC	4 cut(s)	109, 439, 463, 1023
DpnII	GATC	4 cut(s)	107, 437, 461, 1021
DrdI	GACNNNNNNGTC	1 cut(s)	986
DseDI	GACNNNNNNGTC	1 cut(s)	986
Eam1104I	CTCTTC	1 cut(s)	1068
EarI	CTCTTC	1 cut(s)	1068
Ecl136II	GAGCTC	1 cut(s)	376
Eco105I	TACGTA	1 cut(s)	315
Eco130I	CCWWGG	3 cut(s)	209, 465, 864
Eco147I	AGGCCT	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	3 cut(s)	209, 465, 864
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	3 cut(s)	209, 465, 864
FaeI	CATG	6 cut(s)	253, 412, 444, 886, 916, 965
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	6 cut(s)	249, 408, 440, 882, 912, 961
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	537, 1064, 1079
FokI	GGATG	8 cut(s)	103, 133, 170, 335, 461, 541, 593, 882
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	537, 1064, 1079
FspBI	CTAG	2 cut(s)	195, 920
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	3 cut(s)	537, 1064, 1079
GsaI	CCCAGC	1 cut(s)	722
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	208, 329
HapII	CCGG	2 cut(s)	533, 692
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	6 cut(s)	253, 412, 444, 886, 916, 965
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	3 cut(s)	68, 76, 686
HpaII	CCGG	2 cut(s)	533, 692
HphI	GGTGA	3 cut(s)	4, 519, 1031
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	2 cut(s)	437, 646
Hpy188III	TCNNGA	5 cut(s)	111, 275, 357, 409, 772
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	4 cut(s)	38, 248, 442, 745
HpyCH4III	ACNGT	3 cut(s)	335, 778, 983
HpyCH4IV	ACGT	3 cut(s)	314, 817, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 706, 788, 1060
HpyF3I	CTNAG	2 cut(s)	276, 1050
HpySE526I	ACGT	3 cut(s)	314, 817, 870
Hsp92II	CATG	6 cut(s)	253, 412, 444, 886, 916, 965
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	107, 437, 461, 1021
LguI	GCTCTTC	1 cut(s)	1068
LmnI	GCTCC	3 cut(s)	113, 259, 341
Lsp1109I	GCAGC	2 cut(s)	523, 1050
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	195, 920
MaeII	ACGT	3 cut(s)	314, 817, 870
MaeIII	GTNAC	2 cut(s)	10, 772
MalI	GATC	4 cut(s)	109, 439, 463, 1023
MboI	GATC	4 cut(s)	107, 437, 461, 1021
MboII	GAAGA	5 cut(s)	121, 860, 901, 1082, 1085
MflI	RGATCY	2 cut(s)	107, 461
MhlI	GDGCHC	3 cut(s)	378, 601, 817
MluCI	AATT	2 cut(s)	702, 726
MlyI	GAGTC	1 cut(s)	680
MmeI	TCCRAC	2 cut(s)	157, 1068
MseI	TTAA	3 cut(s)	93, 167, 561
MslI	CAYNNNNRTG	3 cut(s)	156, 510, 745
MspA1I	CMGCKG	1 cut(s)	1081
MspI	CCGG	2 cut(s)	533, 692
MspR9I	CCNGG	1 cut(s)	692
MwoI	GCNNNNNNNGC	4 cut(s)	246, 706, 788, 1060
NciI	CCSGG	1 cut(s)	692
NdeII	GATC	4 cut(s)	107, 437, 461, 1021
NlaIII	CATG	6 cut(s)	253, 412, 444, 886, 916, 965
NlaIV	GGNNCC	2 cut(s)	463, 598
NmuCI	GTSAC	2 cut(s)	10, 772
OliI	CACNNNNGTG	1 cut(s)	745
PagI	TCATGA	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	1068
PfeI	GAWTC	2 cut(s)	68, 76
PkrI	GCNGC	3 cut(s)	538, 1065, 1080
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
Ppu21I	YACGTR	2 cut(s)	315, 818
PpuMI	RGGWCCY	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	469
PspFI	CCCAGC	1 cut(s)	718
PspN4I	GGNNCC	2 cut(s)	463, 598
PspPI	GGNCC	2 cut(s)	328, 469
PspPPI	RGGWCCY	1 cut(s)	469
PstI	CTGCAG	2 cut(s)	541, 1068
PsuI	RGATCY	2 cut(s)	107, 461
RsaI	GTAC	3 cut(s)	36, 491, 713
RsaNI	GTAC	3 cut(s)	35, 490, 712
RseI	CAYNNNNRTG	3 cut(s)	156, 510, 745
SacI	GAGCTC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	1068
SaqAI	TTAA	3 cut(s)	93, 167, 561
SatI	GCNGC	3 cut(s)	537, 1064, 1079
Sau3AI	GATC	4 cut(s)	107, 437, 461, 1021
Sau96I	GGNCC	2 cut(s)	328, 469
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	3 cut(s)	378, 601, 817
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	4 cut(s)	345, 537, 854, 1064
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	3 cut(s)	156, 510, 745
SnaBI	TACGTA	1 cut(s)	315
Sse9I	AATT	2 cut(s)	702, 726
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	2 cut(s)	202, 1079
SspMI	CTAG	2 cut(s)	195, 920
SstI	GAGCTC	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	690
StyI	CCWWGG	3 cut(s)	209, 465, 864
TaaI	ACNGT	3 cut(s)	335, 778, 983
TaiI	ACGT	3 cut(s)	317, 820, 873
TasI	AATT	2 cut(s)	702, 726
TatI	WGTACW	3 cut(s)	34, 489, 711
TauI	GCSGC	1 cut(s)	1081
TfiI	GAWTC	2 cut(s)	68, 76
Tru1I	TTAA	3 cut(s)	93, 167, 561
Tru9I	TTAA	3 cut(s)	93, 167, 561
TscAI	CASTG	1 cut(s)	804
TseFI	GTSAC	2 cut(s)	10, 772
TseI	GCWGC	2 cut(s)	536, 1063
Tsp45I	GTSAC	2 cut(s)	10, 772
TspDTI	ATGAA	2 cut(s)	901, 950
TspRI	CASTG	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	726
XspI	CTAG	2 cut(s)	195, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.