Rh2BG683300

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007856
Physical Location & Seq
Forward (+)
89175810 .. 89180101
4292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG683300.1

Sequence Viewer

Length: 1032 bp
ATGATTGCAATTCCCTATTTGACCGCGTTAACCACCTACTTCAGCTATGGCTTGCTCTTCGCTTTTGGGCAAGTCAGAGATTTCTTCAGAAAATTCATCGACTGGTGGAGCTCTAATAATCTCCAGGGTTATGCTCCAATCTGTTTAGGACTTGAAGATTTCTACGTCCGTCGTCTCTATCTTCGAATTCAGGACTGTTTCAATAGGCCTATTGCAAGTGCTCCCGATGCTTGGTTTGATGTGGTTGAACGTTACTCCAATGACTACAACAAGACACTCAAACTAACCTCAAACACAAGCCGATGCCTTAACTTGGGATCTTATAACTACCTTGGCTTTGCTGCCGCCGATGAATATTGCACGCCTCGTGCCATCCAGACATTGAAGAAATATTCTCCCAGTACCTGTAGTAGCCGAGTTGATGGCGGCACTACGGCTTTGCACAATGAACTGGAGGAGTGTGTTGCAAATTTTGTTGGAAAACCTGCTGCTATAGTTTTCGGCATGGGTTATGTCACCAACTCTGCTATCCTTCCTGTACTGATCGGAAAGGGAGGTTTGATTGTTAGTGATTCTTTGAATCATAACTCCATTGTTAATGGCGCACGAGGATCTGGAGCATCCATTTGTGTCTTCCAACACAACACTCCATCCCATTTGGATGAAGTTTTAAGAGAACAAATAGCAGAGGGACAACCTAGAACCCGCAGGCCTTGGAAAAAGATTATTGTCATTGTGGAGGGCATATACAGCATGGAAGGGGAGCTTTGCAAACTTCCTGAGATTATAGCAATCTGCAAGAAATATAAGGTCTATACGTATTTGGATGAGGCCCACAGTATTGGAGCTGTAGGAAAATCAGGACGAGGTGTTTGTGAGCTCTTGGGAGTAGATACTGCTGATGTTGATATCATGATGGGAACATTTACCAAATCCTTCGGATCATGTGGTGGCTATATTGCAGGATCCAAGGTTTGCCTTTTTCTGCACTGTTCTTATCCTTTCTATATGTTGAACAACATGTGGTTGTAA

Protein Analysis

343

Amino Acids

38.13

Weight (kDa)

7.88

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 102 - 324 2.6e-32 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 493
AccII CGCG 1 cut(s) 26
AciI CCGC 4 cut(s) 24, 345, 426, 706
AclI AACGTT 1 cut(s) 250
AclWI GGATC 5 cut(s) 325, 619, 949, 960, 973
AcsI RAATTY 3 cut(s) 92, 186, 469
AcuI CTGAAG 2 cut(s) 25, 70
AfaI GTAC 2 cut(s) 403, 540
AfiI CCNNNNNNNGG 2 cut(s) 231, 313
AflIII ACRYGT 1 cut(s) 1020
AgsI TTSAA 6 cut(s) 155, 202, 248, 385, 580, 1015
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 5 cut(s) 45, 111, 766, 848, 880
AluI AGCT 5 cut(s) 45, 111, 766, 848, 880
Alw21I GWGCWC 3 cut(s) 113, 223, 882
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 5 cut(s) 325, 619, 949, 960, 973
AlwNI CAGNNNCTG 1 cut(s) 405
AoxI GGCC 3 cut(s) 206, 710, 831
ApeKI GCWGC 2 cut(s) 341, 488
ApoI RAATTY 3 cut(s) 92, 186, 469
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 1 cut(s) 832
AsuHPI GGTGA 1 cut(s) 508
AsuII TTCGAA 1 cut(s) 184
BamHI GGATCC 1 cut(s) 965
BanII GRGCYC 2 cut(s) 113, 882
BauI CACGAG 2 cut(s) 366, 606
BbsI GAAGAC 1 cut(s) 625
Bbv12I GWGCWC 3 cut(s) 113, 223, 882
BbvI GCAGC 2 cut(s) 328, 475
BccI CCATC 4 cut(s) 380, 416, 658, 910
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 3 cut(s) 406, 492, 849
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 4 cut(s) 342, 345, 427, 489
BlsI GCNGC 4 cut(s) 343, 346, 428, 490
Bme1390I CCNGG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 832
BmiI GGNNCC 1 cut(s) 967
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 217, 293, 629
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 625
BpmI CTGGAG 3 cut(s) 107, 473, 636
Bpu14I TTCGAA 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 819
BsaJI CCNNGG 4 cut(s) 124, 331, 713, 969
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 313
Bse1I ACTGG 3 cut(s) 107, 399, 456
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 4 cut(s) 124, 331, 713, 969
BseGI GGATG 5 cut(s) 372, 620, 650, 667, 832
BseLI CCNNNNNNNGG 2 cut(s) 231, 313
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 3 cut(s) 107, 399, 456
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 2 cut(s) 328, 475
BsgI GTGCAG 1 cut(s) 971
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 208, 712, 833
BsiHKAI GWGCWC 3 cut(s) 113, 223, 882
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 2 cut(s) 231, 313
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 705
BsnI GGCC 3 cut(s) 208, 712, 833
Bsp119I TTCGAA 1 cut(s) 184
Bsp1286I GDGCHC 3 cut(s) 113, 223, 882
Bsp143I GATC 5 cut(s) 317, 543, 611, 941, 965
BspACI CCGC 4 cut(s) 24, 345, 426, 706
BspANI GGCC 3 cut(s) 208, 712, 833
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 1 cut(s) 967
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 5 cut(s) 325, 619, 949, 960, 973
BspQI GCTCTTC 1 cut(s) 62
BspT104I TTCGAA 1 cut(s) 184
BsrI ACTGG 3 cut(s) 107, 399, 456
BssECI CCNNGG 4 cut(s) 124, 331, 713, 969
BssMI GATC 5 cut(s) 317, 543, 611, 941, 965
BssSI CACGAG 2 cut(s) 366, 606
BssT1I CCWWGG 3 cut(s) 331, 713, 969
Bst2BI CACGAG 2 cut(s) 366, 606
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 3 cut(s) 197, 839, 992
Bst6I CTCTTC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 819
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 3 cut(s) 53, 362, 710
BstDEI CTNAG 1 cut(s) 780
BstF5I GGATG 5 cut(s) 372, 620, 650, 667, 832
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 5 cut(s) 320, 546, 614, 944, 968
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 5 cut(s) 317, 543, 611, 941, 965
BstMWI GCNNNNNNNGC 2 cut(s) 227, 750
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 1024
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 3 cut(s) 406, 492, 849
BstSNI TACGTA 1 cut(s) 819
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 328, 475
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 3 cut(s) 317, 611, 965
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 3 cut(s) 317, 611, 965
BsuRI GGCC 3 cut(s) 208, 712, 833
BtsCI GGATG 5 cut(s) 372, 620, 650, 667, 832
BtsIMutI CAGTG 1 cut(s) 988
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 3 cut(s) 53, 362, 710
CaiI CAGNNNCTG 1 cut(s) 405
CciI TCATGA 1 cut(s) 912
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 832
Csp6I GTAC 2 cut(s) 402, 539
CviAII CATG 5 cut(s) 505, 754, 913, 945, 1021
CviQI GTAC 2 cut(s) 402, 539
DdeI CTNAG 1 cut(s) 780
DpnI GATC 5 cut(s) 319, 545, 613, 943, 967
DpnII GATC 5 cut(s) 317, 543, 611, 941, 965
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 2 cut(s) 111, 880
Eco105I TACGTA 1 cut(s) 819
Eco130I CCWWGG 3 cut(s) 331, 713, 969
Eco147I AGGCCT 2 cut(s) 208, 712
Eco24I GRGCYC 2 cut(s) 113, 882
Eco32I GATATC 1 cut(s) 910
Eco53kI GAGCTC 2 cut(s) 111, 880
Eco57I CTGAAG 2 cut(s) 25, 70
EcoICRI GAGCTC 2 cut(s) 111, 880
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 3 cut(s) 331, 713, 969
EcoT38I GRGCYC 2 cut(s) 113, 882
ErhI CCWWGG 3 cut(s) 331, 713, 969
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 5 cut(s) 508, 757, 916, 948, 1024
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 705
FatI CATG 5 cut(s) 504, 753, 912, 944, 1020
FauI CCCGC 1 cut(s) 713
Fnu4HI GCNGC 4 cut(s) 342, 345, 427, 489
FokI GGATG 5 cut(s) 359, 607, 637, 674, 839
FriOI GRGCYC 2 cut(s) 113, 882
Fsp4HI GCNGC 4 cut(s) 342, 345, 427, 489
FspBI CTAG 1 cut(s) 699
GlaI GCGC 1 cut(s) 604
GluI GCNGC 4 cut(s) 342, 345, 427, 489
GsuI CTGGAG 3 cut(s) 107, 473, 636
HaeIII GGCC 3 cut(s) 208, 712, 833
HhaI GCGC 1 cut(s) 605
Hin1II CATG 5 cut(s) 508, 757, 916, 948, 1024
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 572, 580
HpaI GTTAAC 1 cut(s) 30
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 4 cut(s) 77, 89, 548, 941
Hpy188III TCNNGA 7 cut(s) 191, 224, 376, 615, 779, 861, 913
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 3 cut(s) 542, 752, 946
HpyCH4III ACNGT 3 cut(s) 197, 839, 992
HpyCH4IV ACGT 3 cut(s) 165, 250, 818
HpyCH4V TGCA 9 cut(s) 8, 215, 360, 442, 467, 771, 798, 962, 988
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 750
HpyF3I CTNAG 1 cut(s) 780
HpySE526I ACGT 3 cut(s) 165, 250, 818
Hsp92II CATG 5 cut(s) 508, 757, 916, 948, 1024
HspAI GCGC 1 cut(s) 603
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 317, 543, 611, 941, 965
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 6 cut(s) 108, 139, 226, 617, 763, 845
Lsp1109I GCAGC 2 cut(s) 328, 475
LweI GCATC 3 cut(s) 217, 293, 629
MaeI CTAG 1 cut(s) 699
MaeII ACGT 3 cut(s) 165, 250, 818
MaeIII GTNAC 2 cut(s) 251, 514
MalI GATC 5 cut(s) 319, 545, 613, 943, 967
MboI GATC 5 cut(s) 317, 543, 611, 941, 965
MboII GAAGA 6 cut(s) 49, 76, 167, 173, 397, 625
MflI RGATCY 3 cut(s) 317, 611, 965
MhlI GDGCHC 3 cut(s) 113, 223, 882
MluCI AATT 4 cut(s) 9, 92, 186, 469
MmeI TCCRAC 2 cut(s) 457, 661
MnlI CCTC 9 cut(s) 298, 375, 448, 548, 602, 682, 733, 823, 860
MseI TTAA 4 cut(s) 29, 309, 597, 671
MslI CAYNNNNRTG 1 cut(s) 660
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 227, 750
NdeII GATC 5 cut(s) 317, 543, 611, 941, 965
NlaIII CATG 5 cut(s) 508, 757, 916, 948, 1024
NlaIV GGNNCC 1 cut(s) 967
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 1024
NspV TTCGAA 1 cut(s) 184
PagI TCATGA 1 cut(s) 912
PceI AGGCCT 2 cut(s) 208, 712
PciI ACATGT 1 cut(s) 1020
PciSI GCTCTTC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 572, 580
PkrI GCNGC 4 cut(s) 343, 346, 428, 490
Ppu21I YACGTR 1 cut(s) 819
PscI ACATGT 1 cut(s) 1020
PsiI TTATAA 1 cut(s) 324
Psp124BI GAGCTC 2 cut(s) 113, 882
Psp1406I AACGTT 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 967
PspPI GGNCC 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 3 cut(s) 317, 611, 965
RsaI GTAC 2 cut(s) 403, 540
RsaNI GTAC 2 cut(s) 402, 539
RseI CAYNNNNRTG 1 cut(s) 660
SacI GAGCTC 2 cut(s) 113, 882
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 29, 309, 597, 671
SatI GCNGC 4 cut(s) 342, 345, 427, 489
Sau3AI GATC 5 cut(s) 317, 543, 611, 941, 965
Sau96I GGNCC 1 cut(s) 832
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 3 cut(s) 113, 223, 882
SfaNI GCATC 3 cut(s) 217, 293, 629
SfcI CTRYAG 3 cut(s) 406, 492, 849
SfuI TTCGAA 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 660
SnaBI TACGTA 1 cut(s) 819
Sse9I AATT 4 cut(s) 9, 92, 186, 469
SseBI AGGCCT 2 cut(s) 208, 712
SsiI CCGC 4 cut(s) 24, 345, 426, 706
SspI AATATT 2 cut(s) 356, 392
SspMI CTAG 1 cut(s) 699
SstI GAGCTC 2 cut(s) 113, 882
StuI AGGCCT 2 cut(s) 208, 712
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 3 cut(s) 331, 713, 969
TaaI ACNGT 3 cut(s) 197, 839, 992
TaiI ACGT 3 cut(s) 168, 253, 821
TaqI TCGA 2 cut(s) 99, 184
TasI AATT 4 cut(s) 9, 92, 186, 469
TatI WGTACW 1 cut(s) 538
TauI GCSGC 2 cut(s) 347, 429
TfiI GAWTC 2 cut(s) 572, 580
Tru1I TTAA 4 cut(s) 29, 309, 597, 671
Tru9I TTAA 4 cut(s) 29, 309, 597, 671
TscAI CASTG 1 cut(s) 995
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 2 cut(s) 341, 488
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 4 cut(s) 85, 366, 462, 678
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 995
XapI RAATTY 3 cut(s) 92, 186, 469
XceI RCATGY 1 cut(s) 1024
XspI CTAG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.