Prupe.5G144700_v2.0.a1

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
13326677 .. 13330617
3941 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G144700.1

Sequence Viewer

Length: 1464 bp
ATGATAACCATTCCGTATTTGACCGCGTTGAGCACCTACTTCAGCTACGGCTTGCTCTTTGCCTTCGGCCAATTGCGAGACTTCTTCAGAAAAATCATTGATTGGTGGCAGTCTGGCGATCTCCAGGGTTACGCGCCGATCTGTTTAGGGCTTGAGGATTTCTACATTCGTCGTTTGTATAATCGAATTCAGGATTGTTTTGGACGACCAATATCAAGTGCTCCTGATGCTTGGTTTGATGTTGTTGAGCGTTATTCTAATGACAACAATAAGACCCTAAAACGAACAACGAAGATAAGTAGGTGCCTCAACTTGGGATCATATAATTATTTAGGCTTTGCTGCATCTGATGAATACTGCACACCTCGTGCCATCGAGTCATTGAAGAAGTTTTCCCCAAGTACTTGTAGCAGTCGTGTCGATGGGGGAACTACAACATTGCACAAAGAACTGGAAGAGTGTGTTGCAAACTTTGTTGGAAAACCAGATGCTATGGTAACTGGCATGGGCTATGTGACAAACTCTGCCATCCTACCTGTCCTCATTGGGAAGGGAGGGCTGATAATTAGCGATTCATTGAACCACAACTCAATTGTGAATGGTGCCCGAGGCTCAGGAGCTACAGTTCGAGTTTTCCAACACAATACTCCTTCGCACTTGGAGAAAGTTTTGAGAGAGCAAATTTCTGAGGGACAACCTAGGACACATAGACCATGGAAGAAGATAATTATCATTGTCGAGGGGATATACAGTATGGAAGGAGAACTCTGCCAGCTTCCAGAGATTGTTGCAATATGTAAGAAATATAAGGCATATGTTTACCTGGATGAGGCTCACAGCATTGGAGCAGTTGGAAAAACGGGAAGAGGTGTCTGTGAATTATTAGGGGTTGACACGGCGGATGTAGATATAATGATGGGAACTTTTACAAAATCATTTGGATCATGTGGTGGTTATATAGCTGGATCCAAGGAGGTTATACAATATCTTAAATACACTTGCCCAGCTCATCTATACGCAACTTCAGTATCACCTCCAGCTGCTCAACAAATCATATCTGCTATTAAGGTCATTCTTGGAGAGGATGGTACCAGTCGAGGGGCTCAGAAACTTGCACGGATTCGTGAAAACAGCAACTTCTTCAGGTCAGAGCTGCAGAAGATGGGCTTTGAGGTTCTCGGAGACAATGATTCCCCTGTAATGCCCATAATGCTCTACAATCCAGCAAAAATTCCTGCTTTTTCTAGGGAATGTCTGAAGCAAAATGTTGCTGTTGTGACAGTTGCATTCCCGGCTACTCCTCTACTTTTGGCCAGAGCACGTATTTGTATATCTGCCTCACACACCAAGGAAGATCTTCTCAGAGCCTTGGAGGTTATCAGTCGAGTCGGTGATTTGGTGGGTATAAAATACTTCCCTGCTGAGCCCAGTAAGCAGGAGACAAACGCCATCAAATTGGAATAA

Protein Analysis

488

Amino Acids

53.76

Weight (kDa)

8.55

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1088
AccB1I GGYRCC 3 cut(s) 303, 602, 1088
AccII CGCG 2 cut(s) 26, 134
AciI CCGC 2 cut(s) 24, 899
AclWI GGATC 4 cut(s) 325, 949, 960, 973
AcoI YGGCCR 2 cut(s) 67, 1311
AcsI RAATTY 3 cut(s) 186, 681, 1230
AcuI CTGAAG 5 cut(s) 25, 70, 1008, 1126, 1277
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 2 cut(s) 403, 1090
AfiI CCNNNNNNNGG 3 cut(s) 313, 829, 1098
AgsI TTSAA 2 cut(s) 385, 580
AjnI CCWGG 2 cut(s) 123, 822
AloI GAACNNNNNNTCC 2 cut(s) 609, 641
AluBI AGCT 7 cut(s) 45, 620, 775, 962, 1007, 1040, 1153
AluI AGCT 7 cut(s) 45, 620, 775, 962, 1007, 1040, 1153
Alw21I GWGCWC 3 cut(s) 35, 223, 1321
Alw26I GTCTC 3 cut(s) 72, 1176, 1433
AlwI GGATC 4 cut(s) 325, 949, 960, 973
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 2 cut(s) 67, 1311
ApeKI GCWGC 3 cut(s) 341, 1040, 1153
ApoI RAATTY 3 cut(s) 186, 681, 1230
Asp700I GAANNNNTTC 1 cut(s) 1356
Asp718I GGTACC 1 cut(s) 1088
AspA2I CCTAGG 1 cut(s) 698
AspLEI GCGC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 1292
AsuHPI GGTGA 2 cut(s) 1023, 1403
AvaI CYCGRG 1 cut(s) 606
AvrII CCTAGG 1 cut(s) 698
BaeGI GKGCMC 1 cut(s) 607
BaeI ACNNNNGTAYC 2 cut(s) 1011, 1044
BalI TGGCCA 1 cut(s) 1313
BamHI GGATCC 1 cut(s) 965
BanI GGYRCC 3 cut(s) 303, 602, 1088
BanII GRGCYC 2 cut(s) 1105, 1428
BauI CACGAG 1 cut(s) 366
Bbv12I GWGCWC 3 cut(s) 35, 223, 1321
BbvI GCAGC 3 cut(s) 328, 1027, 1140
BccI CCATC 7 cut(s) 380, 416, 536, 910, 1079, 1156, 1457
BceAI ACGGC 2 cut(s) 64, 912
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 2 cut(s) 125, 824
BcnI CCSGG 1 cut(s) 1292
BcoDI GTCTC 3 cut(s) 72, 1176, 1433
BfaI CTAG 2 cut(s) 699, 1245
BfmI CTRYAG 2 cut(s) 621, 1154
BglII AGATCT 1 cut(s) 1354
BisI GCNGC 3 cut(s) 342, 1041, 1154
BlnI CCTAGG 1 cut(s) 698
BlpI GCTNAGC 1 cut(s) 1422
BlsI GCNGC 3 cut(s) 343, 1042, 1155
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 125, 824, 1292
BmeT110I CYCGRG 1 cut(s) 606
BmiI GGNNCC 4 cut(s) 305, 604, 967, 1090
BmrFI CCNGG 3 cut(s) 125, 824, 1292
BmrI ACTGGG 1 cut(s) 1422
BmsI GCATC 3 cut(s) 217, 353, 478
BmuI ACTGGG 1 cut(s) 1422
BpmI CTGGAG 2 cut(s) 107, 1020
Bpu10I CCTNAGC 1 cut(s) 613
Bpu1102I GCTNAGC 1 cut(s) 1422
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 1292
BsaAI YACGTR 1 cut(s) 1322
BsaBI GATNNNNATC 1 cut(s) 728
BsaJI CCNNGG 7 cut(s) 124, 607, 698, 713, 969, 1347, 1368
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 829, 1098
Bse1I ACTGG 4 cut(s) 456, 505, 1092, 1428
Bse3DI GCAATG 1 cut(s) 437
Bse8I GATNNNNATC 1 cut(s) 728
BseBI CCWGG 2 cut(s) 125, 824
BseDI CCNNGG 7 cut(s) 124, 607, 698, 713, 969, 1347, 1368
BseGI GGATG 4 cut(s) 528, 832, 907, 1090
BseJI GATNNNNATC 1 cut(s) 728
BseLI CCNNNNNNNGG 3 cut(s) 313, 829, 1098
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 5 cut(s) 627, 678, 1118, 1375, 1413
BseNI ACTGG 4 cut(s) 456, 505, 1092, 1428
BseRI GAGGAG 1 cut(s) 1290
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 3 cut(s) 328, 1027, 1140
BseYI CCCAGC 1 cut(s) 1003
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 2 cut(s) 26, 134
BshFI GGCC 2 cut(s) 69, 1313
BshNI GGYRCC 3 cut(s) 303, 602, 1088
BsiHKAI GWGCWC 3 cut(s) 35, 223, 1321
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 1 cut(s) 1292
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 3 cut(s) 313, 829, 1098
BsmAI GTCTC 3 cut(s) 72, 1176, 1433
BsmFI GGGAC 1 cut(s) 705
BsmI GAATGC 1 cut(s) 1286
BsnI GGCC 2 cut(s) 69, 1313
BsoBI CYCGRG 1 cut(s) 606
Bsp1286I GDGCHC 6 cut(s) 35, 223, 607, 1105, 1321, 1428
Bsp143I GATC 6 cut(s) 118, 138, 317, 941, 965, 1354
Bsp1720I GCTNAGC 1 cut(s) 1422
Bsp19I CCATGG 1 cut(s) 713
BspACI CCGC 2 cut(s) 24, 899
BspANI GGCC 2 cut(s) 69, 1313
BspCNI CTCAG 5 cut(s) 626, 679, 1117, 1374, 1414
BspFNI CGCG 2 cut(s) 26, 134
BspLI GGNNCC 4 cut(s) 305, 604, 967, 1090
BspMAI CTGCAG 1 cut(s) 1158
BspPI GGATC 4 cut(s) 325, 949, 960, 973
BspT107I GGYRCC 3 cut(s) 303, 602, 1088
BsrDI GCAATG 1 cut(s) 437
BsrI ACTGG 4 cut(s) 456, 505, 1092, 1428
BssECI CCNNGG 7 cut(s) 124, 607, 698, 713, 969, 1347, 1368
BssMI GATC 6 cut(s) 118, 138, 317, 941, 965, 1354
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 5 cut(s) 698, 713, 969, 1347, 1368
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 125, 824
Bst4CI ACNGT 3 cut(s) 625, 752, 1282
Bst6I CTCTTC 2 cut(s) 450, 859
BstBAI YACGTR 1 cut(s) 1322
BstC8I GCNNGC 2 cut(s) 53, 773
BstDEI CTNAG 5 cut(s) 613, 687, 1104, 1361, 1422
BstDSI CCRYGG 1 cut(s) 713
BstENI CCTNNNNNAGG 1 cut(s) 827
BstF5I GGATG 4 cut(s) 528, 832, 907, 1090
BstFNI CGCG 2 cut(s) 26, 134
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 6 cut(s) 121, 141, 320, 944, 968, 1357
BstMAI GTCTC 3 cut(s) 72, 1176, 1433
BstMBI GATC 6 cut(s) 118, 138, 317, 941, 965, 1354
BstMWI GCNNNNNNNGC 4 cut(s) 227, 1210, 1292, 1432
BstNI CCWGG 2 cut(s) 125, 824
BstSCI CCNGG 3 cut(s) 123, 822, 1290
BstSFI CTRYAG 2 cut(s) 621, 1154
BstSLI GKGCMC 1 cut(s) 607
BstUI CGCG 2 cut(s) 26, 134
BstV1I GCAGC 3 cut(s) 328, 1027, 1140
BstX2I RGATCY 2 cut(s) 965, 1354
BstXI CCANNNNNNTGG 1 cut(s) 1456
BstYI RGATCY 2 cut(s) 965, 1354
BsuRI GGCC 2 cut(s) 69, 1313
BtgI CCRYGG 1 cut(s) 713
BtsCI GGATG 4 cut(s) 528, 832, 907, 1090
Cac8I GCNNGC 2 cut(s) 53, 773
CfoI GCGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 402, 1089
CviAII CATG 3 cut(s) 505, 714, 945
CviQI GTAC 2 cut(s) 402, 1089
DdeI CTNAG 5 cut(s) 613, 687, 1104, 1361, 1422
DpnI GATC 6 cut(s) 120, 140, 319, 943, 967, 1356
DpnII GATC 6 cut(s) 118, 138, 317, 941, 965, 1354
DraIII CACNNNGTG 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 67, 1311
Eam1104I CTCTTC 2 cut(s) 450, 859
EarI CTCTTC 2 cut(s) 450, 859
EciI GGCGGA 1 cut(s) 914
Eco130I CCWWGG 5 cut(s) 698, 713, 969, 1347, 1368
Eco24I GRGCYC 2 cut(s) 1105, 1428
Eco57I CTGAAG 5 cut(s) 25, 70, 1008, 1126, 1277
Eco88I CYCGRG 1 cut(s) 606
EcoNI CCTNNNNNAGG 1 cut(s) 827
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 123, 822
EcoT14I CCWWGG 5 cut(s) 698, 713, 969, 1347, 1368
EcoT38I GRGCYC 2 cut(s) 1105, 1428
ErhI CCWWGG 5 cut(s) 698, 713, 969, 1347, 1368
FaeI CATG 3 cut(s) 508, 717, 948
FalI AAGNNNNNCTT 2 cut(s) 1151, 1183
FaqI GGGAC 1 cut(s) 705
FatI CATG 3 cut(s) 504, 713, 944
FauNDI CATATG 1 cut(s) 814
Fnu4HI GCNGC 3 cut(s) 342, 1041, 1154
FokI GGATG 4 cut(s) 515, 839, 914, 1097
FriOI GRGCYC 2 cut(s) 1105, 1428
Fsp4HI GCNGC 3 cut(s) 342, 1041, 1154
FspBI CTAG 2 cut(s) 699, 1245
GlaI GCGC 1 cut(s) 135
GluI GCNGC 3 cut(s) 342, 1041, 1154
GsaI CCCAGC 1 cut(s) 1007
GsuI CTGGAG 2 cut(s) 107, 1020
HaeIII GGCC 2 cut(s) 69, 1313
HapII CCGG 1 cut(s) 1292
HhaI GCGC 1 cut(s) 136
Hin1II CATG 3 cut(s) 508, 717, 948
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HinfI GANTC 5 cut(s) 377, 572, 1120, 1190, 1386
HpaII CCGG 1 cut(s) 1292
HphI GGTGA 2 cut(s) 1023, 1403
Hpy166II GTNNAC 2 cut(s) 820, 892
Hpy188I TCNGA 8 cut(s) 89, 349, 688, 1107, 1150, 1181, 1257, 1364
Hpy188III TCNNGA 5 cut(s) 191, 224, 615, 779, 1124
Hpy8I GTNNAC 2 cut(s) 820, 892
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 4 cut(s) 73, 544, 660, 752
HpyCH4III ACNGT 3 cut(s) 625, 752, 1282
HpyCH4IV ACGT 1 cut(s) 1321
HpyCH4V TGCA 8 cut(s) 344, 360, 442, 467, 791, 1115, 1156, 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 1210, 1292, 1432
HpyF3I CTNAG 5 cut(s) 613, 687, 1104, 1361, 1422
HpySE526I ACGT 1 cut(s) 1321
Hsp92II CATG 3 cut(s) 508, 717, 948
HspAI GCGC 1 cut(s) 134
KpnI GGTACC 1 cut(s) 1092
Kzo9I GATC 6 cut(s) 118, 138, 317, 941, 965, 1354
LmnI GCTCC 3 cut(s) 226, 617, 845
Lsp1109I GCAGC 3 cut(s) 328, 1027, 1140
LweI GCATC 3 cut(s) 217, 353, 478
MaeI CTAG 2 cut(s) 699, 1245
MaeII ACGT 1 cut(s) 1321
MaeIII GTNAC 4 cut(s) 128, 496, 514, 1276
MalI GATC 6 cut(s) 120, 140, 319, 943, 967, 1356
MboI GATC 6 cut(s) 118, 138, 317, 941, 965, 1354
MfeI CAATTG 2 cut(s) 71, 591
MflI RGATCY 2 cut(s) 965, 1354
MhlI GDGCHC 6 cut(s) 35, 223, 607, 1105, 1321, 1428
MlsI TGGCCA 1 cut(s) 1313
MluNI TGGCCA 1 cut(s) 1313
MlyI GAGTC 2 cut(s) 386, 1395
MmeI TCCRAC 3 cut(s) 457, 661, 832
Mox20I TGGCCA 1 cut(s) 1313
MroXI GAANNNNTTC 1 cut(s) 1356
MscI TGGCCA 1 cut(s) 1313
MseI TTAA 2 cut(s) 990, 1065
Msp20I TGGCCA 1 cut(s) 1313
MspA1I CMGCKG 1 cut(s) 1040
MspI CCGG 1 cut(s) 1292
MspR9I CCNGG 3 cut(s) 125, 824, 1292
MunI CAATTG 2 cut(s) 71, 591
Mva1269I GAATGC 1 cut(s) 1286
MvaI CCWGG 2 cut(s) 125, 824
MvnI CGCG 2 cut(s) 26, 134
MwoI GCNNNNNNNGC 4 cut(s) 227, 1210, 1292, 1432
NciI CCSGG 1 cut(s) 1292
NcoI CCATGG 1 cut(s) 713
NdeI CATATG 1 cut(s) 814
NdeII GATC 6 cut(s) 118, 138, 317, 941, 965, 1354
NlaIII CATG 3 cut(s) 508, 717, 948
NlaIV GGNNCC 4 cut(s) 305, 604, 967, 1090
NmuCI GTSAC 2 cut(s) 514, 1276
PctI GAATGC 1 cut(s) 1286
PdmI GAANNNNTTC 1 cut(s) 1356
PfeI GAWTC 3 cut(s) 572, 1120, 1190
PkrI GCNGC 3 cut(s) 343, 1042, 1155
PleI GAGTC 2 cut(s) 385, 1394
PpsI GAGTC 2 cut(s) 385, 1394
Ppu21I YACGTR 1 cut(s) 1322
Psp6I CCWGG 2 cut(s) 123, 822
PspFI CCCAGC 1 cut(s) 1003
PspGI CCWGG 2 cut(s) 123, 822
PspN4I GGNNCC 4 cut(s) 305, 604, 967, 1090
PstI CTGCAG 1 cut(s) 1158
PsuI RGATCY 2 cut(s) 965, 1354
PvuII CAGCTG 1 cut(s) 1040
RsaI GTAC 2 cut(s) 403, 1090
RsaNI GTAC 2 cut(s) 402, 1089
SaqAI TTAA 2 cut(s) 990, 1065
SatI GCNGC 3 cut(s) 342, 1041, 1154
Sau3AI GATC 6 cut(s) 118, 138, 317, 941, 965, 1354
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 2 cut(s) 386, 1395
ScrFI CCNGG 3 cut(s) 125, 824, 1292
SduI GDGCHC 6 cut(s) 35, 223, 607, 1105, 1321, 1428
SfaNI GCATC 3 cut(s) 217, 353, 478
SfcI CTRYAG 2 cut(s) 621, 1154
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SsiI CCGC 2 cut(s) 24, 899
SspMI CTAG 2 cut(s) 699, 1245
StyD4I CCNGG 3 cut(s) 123, 822, 1290
StyI CCWWGG 5 cut(s) 698, 713, 969, 1347, 1368
TaaI ACNGT 3 cut(s) 625, 752, 1282
TaiI ACGT 1 cut(s) 1324
TaqI TCGA 7 cut(s) 184, 375, 420, 628, 738, 1096, 1384
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 3 cut(s) 572, 1120, 1190
Tru1I TTAA 2 cut(s) 990, 1065
Tru9I TTAA 2 cut(s) 990, 1065
TseFI GTSAC 2 cut(s) 514, 1276
TseI GCWGC 3 cut(s) 341, 1040, 1153
Tsp45I GTSAC 2 cut(s) 514, 1276
TspDTI ATGAA 2 cut(s) 366, 564
TspGWI ACGGA 1 cut(s) 1132
XagI CCTNNNNNAGG 1 cut(s) 827
XapI RAATTY 3 cut(s) 186, 681, 1230
XmaJI CCTAGG 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 1356
XspI CTAG 2 cut(s) 699, 1245
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.