AT5G23670

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
7981641 .. 7985398
3758 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23670.1

Sequence Viewer

Length: 1470 bp
ATGATAACGATTCCTTATTTAACCGCTGTATCCACCTACTTCAGCTATGGATTGCTCTTTGCTTTTGGTCAGCTCCGAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAGGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTGTATCATCGGATTCAGGATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCTTGGTTTGATGTGGTTGAGCGCTACTCTAATGACAACAACAAGACGCTTAAGCGAACAACAAAAACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCTTGGGTTTGGTTCTTTTGATGAATATTGCACGCCTCGTGTTATTGAGTCCTTGAAGAAATTTTCAGCAAGTACATGTAGCTCTCGTGTTGATGCAGGAACTACATCCGTGCATGCAGAACTTGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGGGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACACGCCTTCCCATTTGGAACGAGTTTTGAGAGAACAAATTGCAGAAGGTCAACCTAGGACACATCGACCATGGAAGAAAATTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGATTTGTCATCTACCGGAAGTTGTGGCCATATGCAAGAAGTATAAGGCATATGTTTATTTGGATGAAGCTCACAGCATTGGGGCAATTGGTAAAACAGGAAAGGGTATTTGTGAACTCCTGGGAGTTGACACAGCTGATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGTCTTGTGGTGGCTATATTGCTGGATCTAAGGAGCTCATCCAATATTTGAAGCATCAATGCCCAGCTCATCTTTACGCAACATCCATACCAACTCCTTCCGCACAACAAATTATATCTGCCATTAAAGTTATTCTGGGAGAGGATGGTTCAAATCGAGGGGCACAAAAGCTAGCAAGAATACGTGAGAACAGCAACTTTTTCCGGGCTGAGCTGCAGAAGATGGGATTTGAGGTACTTGGAGACAATGATTCCCCAGTCATGCCTATAATGCTTTACAACCCAGCAAAAATCCCAGCTTTCTCAAGAGAATGTCTGCGACAAAAAGTGGCAGTGGTGGTCGTGGGTTTCCCAGCTACACCTCTACTGCTGGCTAGGGCACGTATTTGCATCTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAGGTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAGAGCCGAAGAAAATAGAACAGTCGAAAAACGACATCAAGCTGGATTGA

Protein Analysis

489

Amino Acids

54.29

Weight (kDa)

8.94

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 102 - 460 3.3e-52 Aminotransferase class I and II
Beta_elim_lyase PF01212 148 - 334 1.6e-08 Beta-eliminating lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1361, 1379
AarI CACCTGC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 303
AccII CGCG 1 cut(s) 134
AciI CCGC 4 cut(s) 24, 1041, 1335, 1401
AclWI GGATC 1 cut(s) 973
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 2 cut(s) 389, 520
AcuI CTGAAG 1 cut(s) 25
AfaI GTAC 2 cut(s) 403, 1176
AfeI AGCGCT 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 313
AflII CTTAAG 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 7 cut(s) 203, 385, 580, 740, 991, 1092, 1347
AjnI CCWGG 2 cut(s) 123, 882
Alw21I GWGCWC 3 cut(s) 223, 607, 978
Alw26I GTCTC 1 cut(s) 1176
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 1 cut(s) 973
Ama87I CYCGRG 1 cut(s) 606
Aor51HI AGCGCT 1 cut(s) 251
AoxI GGCC 1 cut(s) 789
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 488, 1153
ApoI RAATTY 2 cut(s) 389, 520
AspA2I CCTAGG 1 cut(s) 698
AspLEI GCGC 2 cut(s) 136, 252
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 2 cut(s) 1145, 1418
AsuHPI GGTGA 1 cut(s) 1403
AsuNHI GCTAGC 1 cut(s) 1111
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 1 cut(s) 318
AvrII CCTAGG 1 cut(s) 698
BaeGI GKGCMC 3 cut(s) 223, 1105, 1321
BaeI ACNNNNGTAYC 2 cut(s) 12, 45
BalI TGGCCA 1 cut(s) 791
BanI GGYRCC 1 cut(s) 303
BanII GRGCYC 2 cut(s) 978, 1369
BauI CACGAG 2 cut(s) 366, 414
Bbv12I GWGCWC 3 cut(s) 223, 607, 978
BbvI GCAGC 2 cut(s) 475, 1140
BccI CCATC 3 cut(s) 910, 1079, 1156
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BciT130I CCWGG 2 cut(s) 125, 884
BciVI GTATCC 2 cut(s) 40, 122
BcnI CCSGG 2 cut(s) 1145, 1418
BcoDI GTCTC 1 cut(s) 1176
BfaI CTAG 6 cut(s) 114, 297, 468, 699, 1112, 1314
BfmI CTRYAG 1 cut(s) 1154
BfoI RGCGCY 1 cut(s) 253
BfrI CTTAAG 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 291
BfuI GTATCC 2 cut(s) 40, 122
BglII AGATCT 1 cut(s) 1354
BisI GCNGC 2 cut(s) 489, 1154
BlnI CCTAGG 1 cut(s) 698
BlpI GCTNAGC 1 cut(s) 1149
BlsI GCNGC 2 cut(s) 490, 1155
Bme1390I CCNGG 4 cut(s) 125, 884, 1145, 1418
Bme18I GGWCC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 4 cut(s) 305, 319, 619, 922
BmrFI CCNGG 4 cut(s) 125, 884, 1145, 1418
BmrI ACTGGG 1 cut(s) 1190
BmsI GCATC 5 cut(s) 217, 412, 1003, 1338, 1346
BmtI GCTAGC 1 cut(s) 1115
BmuI ACTGGG 1 cut(s) 1190
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 2 cut(s) 107, 636
Bpu10I CCTNAGC 1 cut(s) 1397
Bpu1102I GCTNAGC 1 cut(s) 1149
BpuEI CTTGAG 3 cut(s) 473, 1228, 1355
BpuMI CCSGG 2 cut(s) 1145, 1418
BsaAI YACGTR 2 cut(s) 1124, 1322
BsaJI CCNNGG 4 cut(s) 124, 698, 713, 883
BsaWI WCCGGW 1 cut(s) 778
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 2 cut(s) 536, 1196
BseBI CCWGG 2 cut(s) 125, 884
BseDI CCNNGG 4 cut(s) 124, 698, 713, 883
BseGI GGATG 5 cut(s) 434, 832, 978, 1022, 1090
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 1140
BseNI ACTGG 2 cut(s) 536, 1196
BseSI GKGCMC 3 cut(s) 223, 1105, 1321
BseXI GCAGC 2 cut(s) 475, 1140
BseYI CCCAGC 4 cut(s) 1003, 1222, 1234, 1291
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 791
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 3 cut(s) 223, 607, 978
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 3 cut(s) 779, 1144, 1418
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 1176
BsnI GGCC 1 cut(s) 791
BsoBI CYCGRG 1 cut(s) 606
Bsp1286I GDGCHC 6 cut(s) 223, 607, 978, 1105, 1321, 1369
Bsp143I GATC 3 cut(s) 138, 965, 1354
Bsp1720I GCTNAGC 1 cut(s) 1149
Bsp19I CCATGG 1 cut(s) 713
BspACI CCGC 4 cut(s) 24, 1041, 1335, 1401
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 1 cut(s) 1141
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 4 cut(s) 305, 319, 619, 922
BspMAI CTGCAG 1 cut(s) 1158
BspMI ACCTGC 1 cut(s) 291
BspOI GCTAGC 1 cut(s) 1115
BspPI GGATC 1 cut(s) 973
BspT107I GGYRCC 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 278
BsrI ACTGG 2 cut(s) 536, 1196
BssECI CCNNGG 4 cut(s) 124, 698, 713, 883
BssMI GATC 3 cut(s) 138, 965, 1354
BssSI CACGAG 2 cut(s) 366, 414
BssT1I CCWWGG 2 cut(s) 698, 713
Bst2BI CACGAG 2 cut(s) 366, 414
Bst2UI CCWGG 2 cut(s) 125, 884
Bst4CI ACNGT 1 cut(s) 1443
BstAFI CTTAAG 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 2 cut(s) 1124, 1322
BstC8I GCNNGC 5 cut(s) 362, 444, 486, 1113, 1311
BstDEI CTNAG 3 cut(s) 969, 1149, 1397
BstDSI CCRYGG 1 cut(s) 713
BstEII GGTNACC 1 cut(s) 1391
BstF5I GGATG 5 cut(s) 434, 832, 978, 1022, 1090
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 2 cut(s) 136, 252
BstKTI GATC 3 cut(s) 141, 968, 1357
BstMAI GTCTC 1 cut(s) 1176
BstMBI GATC 3 cut(s) 138, 965, 1354
BstMWI GCNNNNNNNGC 3 cut(s) 227, 646, 1210
BstNI CCWGG 2 cut(s) 125, 884
BstNSI RCATGY 2 cut(s) 408, 446
BstPI GGTNACC 1 cut(s) 1391
BstSCI CCNGG 4 cut(s) 123, 882, 1143, 1416
BstSFI CTRYAG 1 cut(s) 1154
BstSLI GKGCMC 3 cut(s) 223, 1105, 1321
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 475, 1140
BstX2I RGATCY 2 cut(s) 965, 1354
BstYI RGATCY 2 cut(s) 965, 1354
BsuI GTATCC 2 cut(s) 40, 122
BsuRI GGCC 1 cut(s) 791
BtgI CCRYGG 1 cut(s) 713
BtsCI GGATG 5 cut(s) 434, 832, 978, 1022, 1090
BtsI GCAGTG 1 cut(s) 1278
BtsIMutI CAGTG 1 cut(s) 1278
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 5 cut(s) 362, 444, 486, 1113, 1311
CfoI GCGC 2 cut(s) 136, 252
Cfr13I GGNCC 1 cut(s) 318
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 402, 1175
CviAII CATG 7 cut(s) 152, 405, 443, 505, 714, 754, 1201
CviQI GTAC 2 cut(s) 402, 1175
DdeI CTNAG 3 cut(s) 969, 1149, 1397
DpnI GATC 3 cut(s) 140, 967, 1356
DpnII GATC 3 cut(s) 138, 965, 1354
EaeI YGGCCR 1 cut(s) 789
Ecl136II GAGCTC 1 cut(s) 976
Eco130I CCWWGG 2 cut(s) 698, 713
Eco24I GRGCYC 2 cut(s) 978, 1369
Eco47I GGWCC 1 cut(s) 318
Eco47III AGCGCT 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 976
Eco57I CTGAAG 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 606
Eco91I GGTNACC 1 cut(s) 1391
EcoICRI GAGCTC 1 cut(s) 976
EcoO109I RGGNCCY 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 1391
EcoRII CCWGG 2 cut(s) 123, 882
EcoT14I CCWWGG 2 cut(s) 698, 713
EcoT38I GRGCYC 2 cut(s) 978, 1369
ErhI CCWWGG 2 cut(s) 698, 713
FaeI CATG 7 cut(s) 155, 408, 446, 508, 717, 757, 1204
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FatI CATG 7 cut(s) 151, 404, 442, 504, 713, 753, 1200
FauNDI CATATG 2 cut(s) 794, 814
Fnu4HI GCNGC 2 cut(s) 489, 1154
FokI GGATG 5 cut(s) 421, 839, 965, 1009, 1097
FriOI GRGCYC 2 cut(s) 978, 1369
Fsp4HI GCNGC 2 cut(s) 489, 1154
FspBI CTAG 6 cut(s) 114, 297, 468, 699, 1112, 1314
GlaI GCGC 2 cut(s) 135, 251
GluI GCNGC 2 cut(s) 489, 1154
GsaI CCCAGC 4 cut(s) 1007, 1226, 1238, 1295
GsuI CTGGAG 2 cut(s) 107, 636
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 1 cut(s) 791
HapII CCGG 3 cut(s) 779, 1144, 1418
HgaI GACGC 1 cut(s) 283
HhaI GCGC 2 cut(s) 136, 252
Hin1II CATG 7 cut(s) 155, 408, 446, 508, 717, 757, 1204
Hin6I GCGC 2 cut(s) 134, 250
HinP1I GCGC 2 cut(s) 134, 250
HincII GTYRAC 2 cut(s) 695, 892
HindII GTYRAC 2 cut(s) 695, 892
HinfI GANTC 6 cut(s) 10, 187, 377, 572, 1190, 1404
HpaII CCGG 3 cut(s) 779, 1144, 1418
HphI GGTGA 1 cut(s) 1403
Hpy166II GTNNAC 6 cut(s) 111, 221, 695, 878, 892, 907
Hpy188I TCNGA 2 cut(s) 77, 186
Hpy188III TCNNGA 5 cut(s) 191, 541, 615, 1245, 1347
Hpy8I GTNNAC 6 cut(s) 111, 221, 695, 878, 892, 907
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 6 cut(s) 660, 683, 734, 752, 934, 1047
HpyCH4III ACNGT 1 cut(s) 1443
HpyCH4IV ACGT 3 cut(s) 909, 1123, 1321
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 646, 1210
HpyF3I CTNAG 3 cut(s) 969, 1149, 1397
HpySE526I ACGT 3 cut(s) 909, 1123, 1321
Hsp92II CATG 7 cut(s) 155, 408, 446, 508, 717, 757, 1204
HspAI GCGC 2 cut(s) 134, 250
Kzo9I GATC 3 cut(s) 138, 965, 1354
LmnI GCTCC 3 cut(s) 78, 617, 973
Lsp1109I GCAGC 2 cut(s) 475, 1140
LweI GCATC 5 cut(s) 217, 412, 1003, 1338, 1346
MaeI CTAG 6 cut(s) 114, 297, 468, 699, 1112, 1314
MaeII ACGT 3 cut(s) 909, 1123, 1321
MaeIII GTNAC 2 cut(s) 463, 1391
MalI GATC 3 cut(s) 140, 967, 1356
MboI GATC 3 cut(s) 138, 965, 1354
MboII GAAGA 6 cut(s) 76, 397, 730, 1171, 1364, 1441
MfeI CAATTG 1 cut(s) 849
MflI RGATCY 2 cut(s) 965, 1354
MhlI GDGCHC 6 cut(s) 223, 607, 978, 1105, 1321, 1369
MlsI TGGCCA 1 cut(s) 791
MluCI AATT 8 cut(s) 310, 325, 389, 520, 681, 723, 849, 1050
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 791
MscI TGGCCA 1 cut(s) 791
MseI TTAA 3 cut(s) 20, 279, 1065
Msp20I TGGCCA 1 cut(s) 791
MspA1I CMGCKG 2 cut(s) 26, 899
MspCI CTTAAG 1 cut(s) 278
MspI CCGG 3 cut(s) 779, 1144, 1418
MspR9I CCNGG 4 cut(s) 125, 884, 1145, 1418
MunI CAATTG 1 cut(s) 849
MvaI CCWGG 2 cut(s) 125, 884
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 227, 646, 1210
NciI CCSGG 2 cut(s) 1145, 1418
NcoI CCATGG 1 cut(s) 713
NdeI CATATG 2 cut(s) 794, 814
NdeII GATC 3 cut(s) 138, 965, 1354
NheI GCTAGC 1 cut(s) 1111
NlaIII CATG 7 cut(s) 155, 408, 446, 508, 717, 757, 1204
NlaIV GGNNCC 4 cut(s) 305, 319, 619, 922
NmuCI GTSAC 1 cut(s) 1391
NspI RCATGY 2 cut(s) 408, 446
PaeI GCATGC 1 cut(s) 446
PaeR7I CTCGAG 1 cut(s) 606
PaqCI CACCTGC 1 cut(s) 291
PciI ACATGT 1 cut(s) 404
PfeI GAWTC 5 cut(s) 10, 187, 572, 1190, 1404
PkrI GCNGC 2 cut(s) 490, 1155
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 2 cut(s) 1124, 1322
PpuMI RGGWCCY 1 cut(s) 318
PscI ACATGT 1 cut(s) 404
PsiI TTATAA 2 cut(s) 1361, 1379
Psp124BI GAGCTC 1 cut(s) 978
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 123, 882
PspEI GGTNACC 1 cut(s) 1391
PspFI CCCAGC 4 cut(s) 1003, 1222, 1234, 1291
PspGI CCWGG 2 cut(s) 123, 882
PspN4I GGNNCC 4 cut(s) 305, 319, 619, 922
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PspXI VCTCGAGB 1 cut(s) 606
PstI CTGCAG 1 cut(s) 1158
PsuI RGATCY 2 cut(s) 965, 1354
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 2 cut(s) 403, 1176
RsaNI GTAC 2 cut(s) 402, 1175
SacI GAGCTC 1 cut(s) 978
SaqAI TTAA 3 cut(s) 20, 279, 1065
SatI GCNGC 2 cut(s) 489, 1154
Sau3AI GATC 3 cut(s) 138, 965, 1354
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 4 cut(s) 125, 884, 1145, 1418
SduI GDGCHC 6 cut(s) 223, 607, 978, 1105, 1321, 1369
SfaNI GCATC 5 cut(s) 217, 412, 1003, 1338, 1346
SfcI CTRYAG 1 cut(s) 1154
Sfr274I CTCGAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 318
SlaI CTCGAG 1 cut(s) 606
SmlI CTYRAG 5 cut(s) 278, 452, 606, 1243, 1370
SmoI CTYRAG 5 cut(s) 278, 452, 606, 1243, 1370
SphI GCATGC 1 cut(s) 446
Sse9I AATT 8 cut(s) 310, 325, 389, 520, 681, 723, 849, 1050
SsiI CCGC 4 cut(s) 24, 1041, 1335, 1401
SspI AATATT 3 cut(s) 356, 986, 1412
SspMI CTAG 6 cut(s) 114, 297, 468, 699, 1112, 1314
SstI GAGCTC 1 cut(s) 978
StyD4I CCNGG 4 cut(s) 123, 882, 1143, 1416
StyI CCWWGG 2 cut(s) 698, 713
TaaI ACNGT 1 cut(s) 1443
TaiI ACGT 3 cut(s) 912, 1126, 1324
TaqI TCGA 5 cut(s) 215, 607, 709, 1096, 1445
TasI AATT 8 cut(s) 310, 325, 389, 520, 681, 723, 849, 1050
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 5 cut(s) 10, 187, 572, 1190, 1404
Tru1I TTAA 3 cut(s) 20, 279, 1065
Tru9I TTAA 3 cut(s) 20, 279, 1065
TscAI CASTG 1 cut(s) 1278
TseFI GTSAC 1 cut(s) 1391
TseI GCWGC 2 cut(s) 488, 1153
Tsp45I GTSAC 1 cut(s) 1391
TspDTI ATGAA 3 cut(s) 85, 366, 843
TspGWI ACGGA 3 cut(s) 77, 427, 617
TspRI CASTG 1 cut(s) 1278
Vha464I CTTAAG 1 cut(s) 278
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 2 cut(s) 389, 520
XceI RCATGY 2 cut(s) 408, 446
XhoI CTCGAG 1 cut(s) 606
XmaJI CCTAGG 1 cut(s) 698
XspI CTAG 6 cut(s) 114, 297, 468, 699, 1112, 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.