FvH4_6g54160

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
39557206 .. 39561364
4159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g54160.t1

Sequence Viewer

Length: 1470 bp
ATGATTGCCATTCCCTATTTGACCGCCTTAACCACCTACTTCAGCTATGGCCTCCTCTTCGCCTTTGGCCAAGTCCGAGATTTCTTCAGAAAATTCATCGACTGGAGGAGCTCCAATAATCTCCAGGGCTATGCTCCAATCTGTTTAGGACTTGAAGATTTCTACACCCGTCGACTCTATCTTCGAATTCAGGACTGTTTCAATAGGCCTATATCAAGTGCTCCTGATGCTTGGTTTGATGTTGTTGAACGTTACTCTAATGACTACAACAAGACACTCAAACTAACCTCAAGCACAAGTCGATGCCTTAACTTGGGATCCTATAACTACCTTGGCTTTGCTGCTGCCGATGAATACTGCACGCCCCGCGCCATCAAGACTTTGAGAAAGTATTCTCCCAGTACCTGTAGTAGCCGAGTTGATGGCGGCACTACTGTTTTGCACAATGAGCTGGAGGAGTGTGTTGCAAGTTTTGTTGGCAAACCTGCTGCTATAGTTTTCGGCATGGGTTATGTCACTAACTCTGCAATCCTTCCTGTACTGATCGGAAAGGGAGGTTTGATTGTTAGTGATTCTTTAAATCATAATTCTATTGTTAATGGCGCACGAGGATCTGGAGCATCCATTTGTGTCTTCCAACACAATACTCCTTCCCATTTGGATGAAGTTTTAAGAGAACAAATAGCAGAGGGACAACCTAGAACTCGCAGGCCTTGGAAAAAGATAATTGTCATTGTGGAGGGCATATACAGTATGGAAGGGGAGCTTTGCAAACTTCCTGAGATTATTGCAATCTGCAAGAAATATAAGGTTTATACGTATTTGGATGAGGCCCACAGTATTGGAGCTGTAGGAAAATCAGGACGAGGTGTTTGTGAGCTCTTGGGAGTGGATACAGCTGATGTAGATATCATGATGGGAACATTCACCAAATCCTTCGGATCATGTGGTGGCTATATTGCAGGATCCAAGGACCTCATCCAATACCTCAAGCACACTTGCCCTGCTCATCTTTATGCGACTTCCATATCACCACCGGCTGCAGAACAAATTATATCATCCATAAAGGTCTTACTCGGAGAGGATGGTTCCAACAGAGGTGCCCAGAAACTTGCACGAATACGAGAGAATAGCAACTTTTTCAGGTCAGAACTGCAGAAAATGGGTTTTGAGGTTTTGGGGGATAATGACTCCCCAGTAATGCCAATTATGCTCTACAACCCAGCCAAAATTCCTGCCTTCTCACGGGAGTGCCTCAAACAGAATGTGGCTGTCGTGACAGTAGCCTTTCCTGCAACCCCACTACTGTTGGCAAGGGCACGTATCTGTATATCTGCTTCACATACAAGGGAAGACCTGCAGAAAGCCTTGGACGTTATTGGCAGGGTTGGTGATCTGGTGGGTATAAAATACTTCCCTGCTGAGCCAGAGAAGCTGCAAGAAGATGAGAGGGTGCTGAAGTTGGACTGA

Protein Analysis

490

Amino Acids

54.0

Weight (kDa)

8.27

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 102 - 460 6.2e-51 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 493, 1365
AccB1I GGYRCC 1 cut(s) 1100
AccI GTMKAC 1 cut(s) 172
AccII CGCG 1 cut(s) 369
AciI CCGC 3 cut(s) 24, 367, 426
AclI AACGTT 1 cut(s) 250
AclWI GGATC 6 cut(s) 312, 325, 619, 949, 960, 973
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 3 cut(s) 92, 186, 1230
AcuI CTGAAG 2 cut(s) 25, 70
AfaI GTAC 2 cut(s) 403, 540
AfiI CCNNNNNNNGG 2 cut(s) 313, 1245
AgsI TTSAA 3 cut(s) 155, 202, 248
AjnI CCWGG 1 cut(s) 123
AleI CACNNNNGTG 1 cut(s) 1249
AluBI AGCT 8 cut(s) 45, 111, 451, 766, 848, 880, 899, 1435
AluI AGCT 8 cut(s) 45, 111, 451, 766, 848, 880, 899, 1435
Alw21I GWGCWC 3 cut(s) 113, 223, 882
AlwI GGATC 6 cut(s) 312, 325, 619, 949, 960, 973
AlwNI CAGNNNCTG 1 cut(s) 405
AoxI GGCC 5 cut(s) 49, 67, 206, 710, 831
ApeKI GCWGC 5 cut(s) 341, 344, 488, 1040, 1435
ApoI RAATTY 3 cut(s) 92, 186, 1230
ArsI GACNNNNNNTTYG 4 cut(s) 165, 197, 855, 887
Asp700I GAANNNNTTC 1 cut(s) 391
AspLEI GCGC 2 cut(s) 371, 605
AspS9I GGNCC 2 cut(s) 832, 973
AsuHPI GGTGA 3 cut(s) 919, 1023, 1403
AsuII TTCGAA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 973
BaeGI GKGCMC 2 cut(s) 1105, 1321
BalI TGGCCA 1 cut(s) 69
BamHI GGATCC 2 cut(s) 317, 965
BanI GGYRCC 1 cut(s) 1100
BanII GRGCYC 2 cut(s) 113, 882
BarI GAAGNNNNNNTAC 2 cut(s) 1321, 1353
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 2 cut(s) 625, 1359
Bbv12I GWGCWC 3 cut(s) 113, 223, 882
BbvI GCAGC 5 cut(s) 328, 331, 475, 1027, 1422
BccI CCATC 4 cut(s) 380, 416, 910, 1079
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 886
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 6 cut(s) 406, 492, 849, 1041, 1154, 1358
BfuAI ACCTGC 2 cut(s) 493, 1365
BfuI GTATCC 1 cut(s) 886
BisI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
BlpI GCTNAGC 1 cut(s) 1422
BlsI GCNGC 6 cut(s) 343, 346, 428, 490, 1042, 1437
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 973
BmgT120I GGNCC 2 cut(s) 832, 973
BmiI GGNNCC 4 cut(s) 319, 967, 1090, 1102
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 2 cut(s) 393, 1190
BmsI GCATC 3 cut(s) 217, 293, 629
BmuI ACTGGG 2 cut(s) 393, 1190
BpiI GAAGAC 2 cut(s) 625, 1359
BpmI CTGGAG 4 cut(s) 107, 124, 473, 636
Bpu1102I GCTNAGC 1 cut(s) 1422
Bpu14I TTCGAA 1 cut(s) 184
BpuEI CTTGAG 2 cut(s) 274, 974
BsaAI YACGTR 2 cut(s) 819, 1322
BsaJI CCNNGG 5 cut(s) 124, 331, 713, 969, 1368
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 1245
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 3 cut(s) 107, 399, 1196
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 5 cut(s) 124, 331, 713, 969, 1368
BseGI GGATG 6 cut(s) 620, 667, 832, 978, 1058, 1090
BseLI CCNNNNNNNGG 2 cut(s) 313, 1245
BseMII CTCAG 2 cut(s) 771, 1413
BseNI ACTGG 3 cut(s) 107, 399, 1196
BseRI GAGGAG 3 cut(s) 44, 121, 470
BseSI GKGCMC 2 cut(s) 1105, 1321
BseXI GCAGC 5 cut(s) 328, 331, 475, 1027, 1422
BseYI CCCAGC 1 cut(s) 1222
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 5 cut(s) 51, 69, 208, 712, 833
BshNI GGYRCC 1 cut(s) 1100
BsiHKAI GWGCWC 3 cut(s) 113, 223, 882
BsiSI CCGG 1 cut(s) 1037
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 2 cut(s) 313, 1245
BsmFI GGGAC 1 cut(s) 705
BsnI GGCC 5 cut(s) 51, 69, 208, 712, 833
Bsp119I TTCGAA 1 cut(s) 184
Bsp1286I GDGCHC 5 cut(s) 113, 223, 882, 1105, 1321
Bsp143I GATC 6 cut(s) 317, 543, 611, 941, 965, 1393
Bsp1720I GCTNAGC 1 cut(s) 1422
BspACI CCGC 3 cut(s) 24, 367, 426
BspANI GGCC 5 cut(s) 51, 69, 208, 712, 833
BspCNI CTCAG 2 cut(s) 772, 1414
BspFNI CGCG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 4 cut(s) 319, 967, 1090, 1102
BspMAI CTGCAG 3 cut(s) 1045, 1158, 1362
BspMI ACCTGC 2 cut(s) 493, 1365
BspPI GGATC 6 cut(s) 312, 325, 619, 949, 960, 973
BspT104I TTCGAA 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 1100
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 3 cut(s) 107, 399, 1196
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 5 cut(s) 124, 331, 713, 969, 1368
BssMI GATC 6 cut(s) 317, 543, 611, 941, 965, 1393
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 4 cut(s) 331, 713, 969, 1368
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 6 cut(s) 197, 436, 752, 839, 1282, 1308
Bst6I CTCTTC 1 cut(s) 62
BstBAI YACGTR 2 cut(s) 819, 1322
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 362, 710
BstDEI CTNAG 2 cut(s) 780, 1422
BstF5I GGATG 6 cut(s) 620, 667, 832, 978, 1058, 1090
BstFNI CGCG 1 cut(s) 369
BstHHI GCGC 2 cut(s) 371, 605
BstKTI GATC 6 cut(s) 320, 546, 614, 944, 968, 1396
BstMBI GATC 6 cut(s) 317, 543, 611, 941, 965, 1393
BstMWI GCNNNNNNNGC 6 cut(s) 227, 366, 448, 1210, 1292, 1432
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 6 cut(s) 406, 492, 849, 1041, 1154, 1358
BstSLI GKGCMC 2 cut(s) 1105, 1321
BstSNI TACGTA 1 cut(s) 819
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 5 cut(s) 328, 331, 475, 1027, 1422
BstV2I GAAGAC 2 cut(s) 625, 1359
BstX2I RGATCY 3 cut(s) 317, 611, 965
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 3 cut(s) 317, 611, 965
BsuI GTATCC 1 cut(s) 886
BsuRI GGCC 5 cut(s) 51, 69, 208, 712, 833
BtsCI GGATG 6 cut(s) 620, 667, 832, 978, 1058, 1090
BveI ACCTGC 2 cut(s) 493, 1365
Cac8I GCNNGC 2 cut(s) 362, 710
CaiI CAGNNNCTG 1 cut(s) 405
CciI TCATGA 1 cut(s) 912
CfoI GCGC 2 cut(s) 371, 605
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 2 cut(s) 832, 973
Csp6I GTAC 2 cut(s) 402, 539
CspCI CAANNNNNGTGG 2 cut(s) 1290, 1325
CviAII CATG 3 cut(s) 505, 913, 945
CviQI GTAC 2 cut(s) 402, 539
DdeI CTNAG 2 cut(s) 780, 1422
DpnI GATC 6 cut(s) 319, 545, 613, 943, 967, 1395
DpnII GATC 6 cut(s) 317, 543, 611, 941, 965, 1393
DraI TTTAAA 1 cut(s) 579
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 2 cut(s) 111, 880
Eco105I TACGTA 1 cut(s) 819
Eco130I CCWWGG 4 cut(s) 331, 713, 969, 1368
Eco147I AGGCCT 2 cut(s) 208, 712
Eco24I GRGCYC 2 cut(s) 113, 882
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 1 cut(s) 973
Eco53kI GAGCTC 2 cut(s) 111, 880
Eco57I CTGAAG 2 cut(s) 25, 70
EcoICRI GAGCTC 2 cut(s) 111, 880
EcoO109I RGGNCCY 1 cut(s) 973
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 4 cut(s) 331, 713, 969, 1368
EcoT38I GRGCYC 2 cut(s) 113, 882
ErhI CCWWGG 4 cut(s) 331, 713, 969, 1368
FaeI CATG 3 cut(s) 508, 916, 948
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 705
FatI CATG 3 cut(s) 504, 912, 944
FauI CCCGC 1 cut(s) 374
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
FokI GGATG 6 cut(s) 607, 674, 839, 965, 1045, 1097
FriOI GRGCYC 2 cut(s) 113, 882
Fsp4HI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
FspBI CTAG 1 cut(s) 699
GlaI GCGC 2 cut(s) 370, 604
GluI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
GsaI CCCAGC 1 cut(s) 1226
GsuI CTGGAG 4 cut(s) 107, 124, 473, 636
HaeIII GGCC 5 cut(s) 51, 69, 208, 712, 833
HapII CCGG 1 cut(s) 1037
HhaI GCGC 2 cut(s) 371, 605
Hin1II CATG 3 cut(s) 508, 916, 948
Hin6I GCGC 2 cut(s) 369, 603
HinP1I GCGC 2 cut(s) 369, 603
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HinfI GANTC 3 cut(s) 174, 572, 1190
HpaII CCGG 1 cut(s) 1037
HphI GGTGA 3 cut(s) 919, 1023, 1403
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 6 cut(s) 77, 89, 548, 941, 1079, 1150
Hpy188III TCNNGA 8 cut(s) 191, 224, 376, 615, 779, 861, 913, 1276
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 5 cut(s) 542, 660, 752, 946, 1249
HpyCH4III ACNGT 6 cut(s) 197, 436, 752, 839, 1282, 1308
HpyCH4IV ACGT 4 cut(s) 250, 818, 1321, 1374
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 366, 448, 1210, 1292, 1432
HpyF3I CTNAG 2 cut(s) 780, 1422
HpySE526I ACGT 4 cut(s) 250, 818, 1321, 1374
Hsp92II CATG 3 cut(s) 508, 916, 948
HspAI GCGC 2 cut(s) 369, 603
Kzo9I GATC 6 cut(s) 317, 543, 611, 941, 965, 1393
LmnI GCTCC 7 cut(s) 108, 116, 139, 226, 617, 763, 845
Lsp1109I GCAGC 5 cut(s) 328, 331, 475, 1027, 1422
LweI GCATC 3 cut(s) 217, 293, 629
MaeI CTAG 1 cut(s) 699
MaeII ACGT 4 cut(s) 250, 818, 1321, 1374
MaeIII GTNAC 3 cut(s) 251, 514, 1276
MalI GATC 6 cut(s) 319, 545, 613, 943, 967, 1395
MboI GATC 6 cut(s) 317, 543, 611, 941, 965, 1393
MboII GAAGA 7 cut(s) 49, 76, 167, 173, 625, 1364, 1454
MflI RGATCY 3 cut(s) 317, 611, 965
MhlI GDGCHC 5 cut(s) 113, 223, 882, 1105, 1321
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 7 cut(s) 92, 186, 586, 726, 1050, 1206, 1230
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 2 cut(s) 168, 1184
MmeI TCCRAC 3 cut(s) 661, 1116, 1443
Mox20I TGGCCA 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 391
MscI TGGCCA 1 cut(s) 69
MseI TTAA 5 cut(s) 29, 309, 578, 597, 671
MslI CAYNNNNRTG 3 cut(s) 660, 1014, 1249
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 899
MspI CCGG 1 cut(s) 1037
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 6 cut(s) 227, 366, 448, 1210, 1292, 1432
NdeII GATC 6 cut(s) 317, 543, 611, 941, 965, 1393
NlaIII CATG 3 cut(s) 508, 916, 948
NlaIV GGNNCC 4 cut(s) 319, 967, 1090, 1102
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 2 cut(s) 514, 1276
NspV TTCGAA 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 1249
PagI TCATGA 1 cut(s) 912
PceI AGGCCT 2 cut(s) 208, 712
PdmI GAANNNNTTC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 6 cut(s) 343, 346, 428, 490, 1042, 1437
PleI GAGTC 2 cut(s) 168, 1184
PpsI GAGTC 2 cut(s) 168, 1184
Ppu21I YACGTR 2 cut(s) 819, 1322
PpuMI RGGWCCY 1 cut(s) 973
Psp124BI GAGCTC 2 cut(s) 113, 882
Psp1406I AACGTT 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 973
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 1222
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 4 cut(s) 319, 967, 1090, 1102
PspPI GGNCC 2 cut(s) 832, 973
PspPPI RGGWCCY 1 cut(s) 973
PstI CTGCAG 3 cut(s) 1045, 1158, 1362
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 3 cut(s) 317, 611, 965
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 2 cut(s) 403, 540
RsaNI GTAC 2 cut(s) 402, 539
RseI CAYNNNNRTG 3 cut(s) 660, 1014, 1249
SacI GAGCTC 2 cut(s) 113, 882
SalI GTCGAC 1 cut(s) 171
SaqAI TTAA 5 cut(s) 29, 309, 578, 597, 671
SatI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
Sau3AI GATC 6 cut(s) 317, 543, 611, 941, 965, 1393
Sau96I GGNCC 2 cut(s) 832, 973
SchI GAGTC 2 cut(s) 168, 1184
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 5 cut(s) 113, 223, 882, 1105, 1321
SfaNI GCATC 3 cut(s) 217, 293, 629
SfcI CTRYAG 6 cut(s) 406, 492, 849, 1041, 1154, 1358
SfuI TTCGAA 1 cut(s) 184
SinI GGWCC 1 cut(s) 973
SmiMI CAYNNNNRTG 3 cut(s) 660, 1014, 1249
SmlI CTYRAG 2 cut(s) 289, 989
SmoI CTYRAG 2 cut(s) 289, 989
SnaBI TACGTA 1 cut(s) 819
Sse9I AATT 7 cut(s) 92, 186, 586, 726, 1050, 1206, 1230
SseBI AGGCCT 2 cut(s) 208, 712
SsiI CCGC 3 cut(s) 24, 367, 426
SspMI CTAG 1 cut(s) 699
SstI GAGCTC 2 cut(s) 113, 882
StuI AGGCCT 2 cut(s) 208, 712
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 4 cut(s) 331, 713, 969, 1368
TaaI ACNGT 6 cut(s) 197, 436, 752, 839, 1282, 1308
TaiI ACGT 4 cut(s) 253, 821, 1324, 1377
TaqI TCGA 4 cut(s) 99, 172, 184, 301
TasI AATT 7 cut(s) 92, 186, 586, 726, 1050, 1206, 1230
TatI WGTACW 1 cut(s) 538
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 5 cut(s) 29, 309, 578, 597, 671
Tru9I TTAA 5 cut(s) 29, 309, 578, 597, 671
TseFI GTSAC 2 cut(s) 514, 1276
TseI GCWGC 5 cut(s) 341, 344, 488, 1040, 1435
Tsp45I GTSAC 2 cut(s) 514, 1276
TspDTI ATGAA 3 cut(s) 85, 366, 678
VpaK11BI GGWCC 1 cut(s) 973
XapI RAATTY 3 cut(s) 92, 186, 1230
XmiI GTMKAC 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 391
XspI CTAG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.