MD17G1008800.v1.1

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
563796 .. 568066
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1008800.v1.1.491

Sequence Viewer

Length: 1473 bp
ATGATTGCGATCCCTTATTTAACCGCGTTAACCACGTACTTCAGCTATGGATTGCTCTTCGTTTTCGGCCAAGTCAGAGATTTCTTCCGCAAAATCATTGACTGGTGGAGTGCTAGCAATTTGCAGGGTTATGCTCCAATCTGTTTAGGACTTGAAGATTTCTATATTCGCCGGCTTTATCTTCGAATTCAGGACTGTTTCAATAGACCTATTGCAAGTGCTCCTGATGCTTGGTTTGATGTGGTTGAACGCTACTCCAATGACTACAACAAAACACTCAAGCTGACGAAAAAAACTAGTCGATGCCTTAACTTAGGATCTTACAATTACCTTGGCTTTGCTGCATCCGATGAGTACTGCACGCCTCGCGCTATTGAGACGTTGAAAAAATATTCTCCCAGTACCTGTAGCAGCAGAGTTGACGGCGGCACCACCGATTTGCATAATGAGCTGGAAGAGTGTGTTGCAAATTTTGTCGGGAAACCTGCTGCAATAGTTTTTGGAATGGGTTATGTCACAAACTCTGCTATCCTTCCTGTCCTGATGGGGAAGGGAGGCTTGATTGTTAGTGATTCTTTGAACCACAACTCTATTGTCAACGGCGCAAGAGGATCTGGAGCTAGAGTTTGTGTTTTCCAACACAATACTCCTGCTCATTTGGAGGAAGTTTTGAGAGAAAAAATCGCAGAGGGGCAGCCTAGGACCCGCAGACCCTGGAAGAAGATAATCGTCATTGTGGAGGGGATATACAGCATGGAAGGGGAGCTTTGTAAACTTCCTGAGATTATAGCAATCTGCAAAAAATATAAGGCATATACATATTTGGATGAGGCCCACAGCATTGGAGCAGTAGGGAAAACAGGAAGAGGTGTTTGTGAGCTCTTAGGAGTCGATACAGCTGATGTAGATATCATGATGGGAACATTTACCAAGTCATTTGGATCATGTGGTGGCTATATTGCAGGATCTAAGGAGCTTATCCAATACTTGAAGTACACTTGCCCTGCTCATCTTTATGCAACTTCAATATCACCACCAGCTGCCCAACAAATAATATGTGCCATAAAGGTCCTTCTTGGAGAGGATGGTTCCAATAGAGGTGCCCAAAAACTTGCACGGATACGAGAGAATAGCAACTTTTTCAGGTCAGAACTACAAAAAATGGGTTTTGAGGTTTTGGGGGATAACGACTCTCCAGTAATGCCGATTATGCTATACAACCCAGCCAAAATTCCTGCCTTCTCACGGGAGTGCCTCAAGCAAAATGTAGCTGTTGTGACAGTAGCATTTCCAGCAACCCCGCTACTGTTGGCAAGGGCACGTATATGCATATCTGCATCTCATACGAGGGAAGACTTGATCAAAGCCTTGGAGGTCTTCGGGAGGGTTGGTGATCTGGTGGGTATAAAATACTTCCCCGCTGAACCAAAGAAGGCGCAGGCCGAAGAAGAAAGGTTGCTGAAGGTGGACTGA

Protein Analysis

491

Amino Acids

54.26

Weight (kDa)

8.58

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 102 - 459 1e-50 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 2 cut(s) 428, 1100
AccII CGCG 2 cut(s) 26, 369
AciI CCGC 6 cut(s) 24, 88, 426, 706, 1301, 1419
AclWI GGATC 5 cut(s) 4, 325, 619, 949, 973
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 3 cut(s) 186, 469, 1230
AcuI CTGAAG 1 cut(s) 25
AfaI GTAC 4 cut(s) 38, 356, 403, 995
AfiI CCNNNNNNNGG 1 cut(s) 1245
AgsI TTSAA 7 cut(s) 155, 202, 248, 385, 580, 991, 1026
AhlI ACTAGT 1 cut(s) 296
AjnI CCWGG 1 cut(s) 713
AleI CACNNNNGTG 1 cut(s) 1249
Alw21I GWGCWC 2 cut(s) 223, 882
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 5 cut(s) 4, 325, 619, 949, 973
AlwNI CAGNNNCTG 2 cut(s) 405, 714
AoxI GGCC 3 cut(s) 67, 831, 1440
ApeKI GCWGC 5 cut(s) 341, 411, 488, 694, 1040
ApoI RAATTY 3 cut(s) 186, 469, 1230
AspA2I CCTAGG 1 cut(s) 698
AspLEI GCGC 3 cut(s) 371, 605, 1438
AspS9I GGNCC 3 cut(s) 702, 832, 1069
AsuHPI GGTGA 2 cut(s) 1023, 1403
AsuII TTCGAA 1 cut(s) 184
AsuNHI GCTAGC 1 cut(s) 113
AvaII GGWCC 2 cut(s) 702, 1069
AvrII CCTAGG 1 cut(s) 698
BaeGI GKGCMC 2 cut(s) 1105, 1321
BanI GGYRCC 2 cut(s) 428, 1100
BanII GRGCYC 1 cut(s) 882
BbsI GAAGAC 2 cut(s) 1359, 1369
Bbv12I GWGCWC 2 cut(s) 223, 882
BbvI GCAGC 5 cut(s) 328, 423, 475, 706, 1027
BccI CCATC 3 cut(s) 538, 910, 1079
BceAI ACGGC 2 cut(s) 439, 616
BciT130I CCWGG 1 cut(s) 715
BciVI GTATCC 1 cut(s) 1113
BclI TGATCA 1 cut(s) 1359
BcoDI GTCTC 1 cut(s) 371
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 4 cut(s) 114, 297, 621, 699
BfmI CTRYAG 1 cut(s) 406
BfuAI ACCTGC 1 cut(s) 493
BfuI GTATCC 1 cut(s) 1113
BisI GCNGC 6 cut(s) 342, 412, 427, 489, 695, 1041
BlnI CCTAGG 1 cut(s) 698
BlsI GCNGC 6 cut(s) 343, 413, 428, 490, 696, 1042
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 715
Bme18I GGWCC 2 cut(s) 702, 1069
BmgT120I GGNCC 3 cut(s) 702, 832, 1069
BmiI GGNNCC 4 cut(s) 430, 704, 1090, 1102
BmrFI CCNGG 1 cut(s) 715
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 4 cut(s) 217, 293, 353, 1346
BmtI GCTAGC 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 2 cut(s) 1359, 1369
BpmI CTGGAG 2 cut(s) 636, 1179
Bpu14I TTCGAA 1 cut(s) 184
BpuEI CTTGAG 2 cut(s) 263, 1241
BsaAI YACGTR 2 cut(s) 36, 1322
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 331, 698, 713, 1368
BsaXI ACNNNNNCTCC 4 cut(s) 609, 639, 1375, 1405
Bsc4I CCNNNNNNNGG 1 cut(s) 1245
Bse118I RCCGGY 1 cut(s) 171
Bse1I ACTGG 3 cut(s) 107, 399, 1196
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 715
BseDI CCNNGG 4 cut(s) 331, 698, 713, 1368
BseGI GGATG 3 cut(s) 344, 832, 1090
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 1245
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 3 cut(s) 107, 399, 1196
BseSI GKGCMC 2 cut(s) 1105, 1321
BseXI GCAGC 5 cut(s) 328, 423, 475, 706, 1027
BseYI CCCAGC 1 cut(s) 1222
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 2 cut(s) 26, 369
BshFI GGCC 3 cut(s) 69, 833, 1442
BshNI GGYRCC 2 cut(s) 428, 1100
BsiHKAI GWGCWC 2 cut(s) 223, 882
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 1245
BsmAI GTCTC 1 cut(s) 371
BsmBI CGTCTC 1 cut(s) 371
BsnI GGCC 3 cut(s) 69, 833, 1442
Bsp119I TTCGAA 1 cut(s) 184
Bsp1286I GDGCHC 4 cut(s) 223, 882, 1105, 1321
Bsp143I GATC 7 cut(s) 9, 317, 611, 941, 965, 1359, 1393
BspACI CCGC 6 cut(s) 24, 88, 426, 706, 1301, 1419
BspANI GGCC 3 cut(s) 69, 833, 1442
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 2 cut(s) 26, 369
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 4 cut(s) 430, 704, 1090, 1102
BspMI ACCTGC 1 cut(s) 493
BspOI GCTAGC 1 cut(s) 117
BspPI GGATC 5 cut(s) 4, 325, 619, 949, 973
BspQI GCTCTTC 1 cut(s) 62
BspT104I TTCGAA 1 cut(s) 184
BspT107I GGYRCC 2 cut(s) 428, 1100
BsrFI RCCGGY 1 cut(s) 171
BsrI ACTGG 3 cut(s) 107, 399, 1196
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 4 cut(s) 331, 698, 713, 1368
BssMI GATC 7 cut(s) 9, 317, 611, 941, 965, 1359, 1393
BssT1I CCWWGG 3 cut(s) 331, 698, 1368
Bst2UI CCWGG 1 cut(s) 715
Bst4CI ACNGT 3 cut(s) 197, 1282, 1308
Bst6I CTCTTC 3 cut(s) 62, 450, 859
BstBAI YACGTR 2 cut(s) 36, 1322
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 4 cut(s) 115, 173, 362, 1440
BstDEI CTNAG 4 cut(s) 313, 780, 883, 969
BstF5I GGATG 3 cut(s) 344, 832, 1090
BstFNI CGCG 2 cut(s) 26, 369
BstHHI GCGC 3 cut(s) 371, 605, 1438
BstKTI GATC 7 cut(s) 12, 320, 614, 944, 968, 1362, 1396
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 7 cut(s) 9, 317, 611, 941, 965, 1359, 1393
BstMWI GCNNNNNNNGC 5 cut(s) 227, 366, 448, 1210, 1292
BstNI CCWGG 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 713
BstSFI CTRYAG 1 cut(s) 406
BstSLI GKGCMC 2 cut(s) 1105, 1321
BstUI CGCG 2 cut(s) 26, 369
BstV1I GCAGC 5 cut(s) 328, 423, 475, 706, 1027
BstV2I GAAGAC 2 cut(s) 1359, 1369
BstX2I RGATCY 3 cut(s) 317, 611, 965
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 3 cut(s) 317, 611, 965
BsuI GTATCC 1 cut(s) 1113
BsuRI GGCC 3 cut(s) 69, 833, 1442
BtsCI GGATG 3 cut(s) 344, 832, 1090
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 4 cut(s) 115, 173, 362, 1440
CaiI CAGNNNCTG 2 cut(s) 405, 714
CciI TCATGA 1 cut(s) 912
CfoI GCGC 3 cut(s) 371, 605, 1438
Cfr10I RCCGGY 1 cut(s) 171
Cfr13I GGNCC 3 cut(s) 702, 832, 1069
Csp6I GTAC 4 cut(s) 37, 355, 402, 994
CviAII CATG 3 cut(s) 754, 913, 945
CviQI GTAC 4 cut(s) 37, 355, 402, 994
DdeI CTNAG 4 cut(s) 313, 780, 883, 969
DpnI GATC 7 cut(s) 11, 319, 613, 943, 967, 1361, 1395
DpnII GATC 7 cut(s) 9, 317, 611, 941, 965, 1359, 1393
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 3 cut(s) 62, 450, 859
EarI CTCTTC 3 cut(s) 62, 450, 859
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 3 cut(s) 331, 698, 1368
Eco24I GRGCYC 1 cut(s) 882
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 2 cut(s) 702, 1069
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 880
EcoO109I RGGNCCY 2 cut(s) 702, 1069
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 713
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 3 cut(s) 331, 698, 1368
EcoT22I ATGCAT 1 cut(s) 1331
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 3 cut(s) 331, 698, 1368
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 3 cut(s) 757, 916, 948
FalI AAGNNNNNCTT 4 cut(s) 542, 574, 750, 782
FatI CATG 3 cut(s) 753, 912, 944
FauI CCCGC 3 cut(s) 713, 1308, 1426
FbaI TGATCA 1 cut(s) 1359
Fnu4HI GCNGC 6 cut(s) 342, 412, 427, 489, 695, 1041
FokI GGATG 3 cut(s) 331, 839, 1097
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 6 cut(s) 342, 412, 427, 489, 695, 1041
FspBI CTAG 4 cut(s) 114, 297, 621, 699
GlaI GCGC 3 cut(s) 370, 604, 1437
GluI GCNGC 6 cut(s) 342, 412, 427, 489, 695, 1041
GsaI CCCAGC 1 cut(s) 1226
GsuI CTGGAG 2 cut(s) 636, 1179
HaeIII GGCC 3 cut(s) 69, 833, 1442
HapII CCGG 1 cut(s) 172
HhaI GCGC 3 cut(s) 371, 605, 1438
Hin1II CATG 3 cut(s) 757, 916, 948
Hin6I GCGC 3 cut(s) 369, 603, 1436
HinP1I GCGC 3 cut(s) 369, 603, 1436
HincII GTYRAC 3 cut(s) 30, 421, 598
HindII GTYRAC 3 cut(s) 30, 421, 598
HinfI GANTC 3 cut(s) 572, 888, 1190
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 1 cut(s) 172
HphI GGTGA 2 cut(s) 1023, 1403
Hpy166II GTNNAC 6 cut(s) 30, 421, 598, 773, 996, 1468
Hpy188I TCNGA 3 cut(s) 77, 349, 1150
Hpy188III TCNNGA 8 cut(s) 191, 224, 478, 541, 615, 779, 913, 1381
Hpy8I GTNNAC 6 cut(s) 30, 421, 598, 773, 996, 1468
HpyAV CCTTC 7 cut(s) 542, 544, 752, 1082, 1249, 1426, 1456
HpyCH4III ACNGT 3 cut(s) 197, 1282, 1308
HpyCH4IV ACGT 3 cut(s) 35, 380, 1321
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 366, 448, 1210, 1292
HpyF3I CTNAG 4 cut(s) 313, 780, 883, 969
HpySE526I ACGT 3 cut(s) 35, 380, 1321
Hsp92II CATG 3 cut(s) 757, 916, 948
HspAI GCGC 3 cut(s) 369, 603, 1436
KroI GCCGGC 1 cut(s) 171
KroNI GCCGGC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 1359
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 7 cut(s) 9, 317, 611, 941, 965, 1359, 1393
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 6 cut(s) 139, 226, 617, 763, 845, 973
Lsp1109I GCAGC 5 cut(s) 328, 423, 475, 706, 1027
LweI GCATC 4 cut(s) 217, 293, 353, 1346
MaeI CTAG 4 cut(s) 114, 297, 621, 699
MaeII ACGT 3 cut(s) 35, 380, 1321
MaeIII GTNAC 2 cut(s) 514, 1276
MalI GATC 7 cut(s) 11, 319, 613, 943, 967, 1361, 1395
MboI GATC 7 cut(s) 9, 317, 611, 941, 965, 1359, 1393
MflI RGATCY 3 cut(s) 317, 611, 965
MhlI GDGCHC 4 cut(s) 223, 882, 1105, 1321
MluCI AATT 5 cut(s) 118, 186, 325, 469, 1230
MlyI GAGTC 2 cut(s) 897, 1184
MmeI TCCRAC 1 cut(s) 661
Mph1103I ATGCAT 1 cut(s) 1331
MroNI GCCGGC 1 cut(s) 171
MseI TTAA 3 cut(s) 20, 29, 309
MslI CAYNNNNRTG 3 cut(s) 1014, 1249, 1324
MspA1I CMGCKG 3 cut(s) 899, 1040, 1421
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 715
MvaI CCWGG 1 cut(s) 715
MvnI CGCG 2 cut(s) 26, 369
MwoI GCNNNNNNNGC 5 cut(s) 227, 366, 448, 1210, 1292
NaeI GCCGGC 1 cut(s) 173
NdeII GATC 7 cut(s) 9, 317, 611, 941, 965, 1359, 1393
NgoMIV GCCGGC 1 cut(s) 171
NheI GCTAGC 1 cut(s) 113
NlaIII CATG 3 cut(s) 757, 916, 948
NlaIV GGNNCC 4 cut(s) 430, 704, 1090, 1102
NmuCI GTSAC 2 cut(s) 514, 1276
NsiI ATGCAT 1 cut(s) 1331
NspV TTCGAA 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 1249
PagI TCATGA 1 cut(s) 912
PciSI GCTCTTC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 6 cut(s) 343, 413, 428, 490, 696, 1042
PleI GAGTC 2 cut(s) 896, 1184
PpsI GAGTC 2 cut(s) 896, 1184
Ppu21I YACGTR 2 cut(s) 36, 1322
PpuMI RGGWCCY 2 cut(s) 702, 1069
Psp124BI GAGCTC 1 cut(s) 882
Psp5II RGGWCCY 2 cut(s) 702, 1069
Psp6I CCWGG 1 cut(s) 713
PspFI CCCAGC 1 cut(s) 1222
PspGI CCWGG 1 cut(s) 713
PspN4I GGNNCC 4 cut(s) 430, 704, 1090, 1102
PspPI GGNCC 3 cut(s) 702, 832, 1069
PspPPI RGGWCCY 2 cut(s) 702, 1069
PstNI CAGNNNCTG 2 cut(s) 405, 714
PsuI RGATCY 3 cut(s) 317, 611, 965
PvuII CAGCTG 2 cut(s) 899, 1040
RsaI GTAC 4 cut(s) 38, 356, 403, 995
RsaNI GTAC 4 cut(s) 37, 355, 402, 994
RseI CAYNNNNRTG 3 cut(s) 1014, 1249, 1324
SacI GAGCTC 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 3 cut(s) 20, 29, 309
SatI GCNGC 6 cut(s) 342, 412, 427, 489, 695, 1041
Sau3AI GATC 7 cut(s) 9, 317, 611, 941, 965, 1359, 1393
Sau96I GGNCC 3 cut(s) 702, 832, 1069
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 2 cut(s) 897, 1184
ScrFI CCNGG 1 cut(s) 715
SduI GDGCHC 4 cut(s) 223, 882, 1105, 1321
SfaNI GCATC 4 cut(s) 217, 293, 353, 1346
SfcI CTRYAG 1 cut(s) 406
SfuI TTCGAA 1 cut(s) 184
SinI GGWCC 2 cut(s) 702, 1069
SmiMI CAYNNNNRTG 3 cut(s) 1014, 1249, 1324
SmlI CTYRAG 2 cut(s) 278, 1256
SmoI CTYRAG 2 cut(s) 278, 1256
SpeI ACTAGT 1 cut(s) 296
Sse9I AATT 5 cut(s) 118, 186, 325, 469, 1230
SsiI CCGC 6 cut(s) 24, 88, 426, 706, 1301, 1419
SspI AATATT 1 cut(s) 392
SspMI CTAG 4 cut(s) 114, 297, 621, 699
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 1 cut(s) 713
StyI CCWWGG 3 cut(s) 331, 698, 1368
TaaI ACNGT 3 cut(s) 197, 1282, 1308
TaiI ACGT 3 cut(s) 38, 383, 1324
TaqI TCGA 3 cut(s) 184, 301, 891
TasI AATT 5 cut(s) 118, 186, 325, 469, 1230
TatI WGTACW 2 cut(s) 354, 993
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 3 cut(s) 20, 29, 309
Tru9I TTAA 3 cut(s) 20, 29, 309
TseFI GTSAC 2 cut(s) 514, 1276
TseI GCWGC 5 cut(s) 341, 411, 488, 694, 1040
Tsp45I GTSAC 2 cut(s) 514, 1276
TspGWI ACGGA 1 cut(s) 1132
VpaK11BI GGWCC 2 cut(s) 702, 1069
XapI RAATTY 3 cut(s) 186, 469, 1230
XmaJI CCTAGG 1 cut(s) 698
XspI CTAG 4 cut(s) 114, 297, 621, 699
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.