Rroxscaffold_2G00076560

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
350213 .. 354186
3974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076560.1

Sequence Viewer

Length: 1470 bp
ATGATTGCAATTCCCTATTTGACCGCGTTAACCACCTACTTCAGCTATGGCTTGCTCTTCGCTTTTGGGCAAGTCAGAGATTTCTTCAGAAAATTCATCGACTGGTGGAGCTCTAACAATCTCCAGGGTTATGCTCCAATCTGTTTAGGACTTGAAGATTTCTACGTCCGTCGACTCTATCTTCGAATTCAGGACTGTTTCAATAGGCCTATTGCAAGTGCTCCCGATGCTTGGTTTGATGTGGTTGAACGTTACTCCAATGACTACAACAAGACACTCAAACTAACCTCAAACACAAGCCGATGCCTTAACTTGGGATCTTATAACTACCTTGGCTTTGCTGCCGCCGATGAATATTGCACGCCTCGTGCCATCCAGACATTGAAGAAATATTCTCCCAGTACCTGTAGTAGCCGAGTTGATGGCGGCACTACGGCTTTGCACAATGAACTGGAGGAGTGTGTTGCAAATTTTGTTGGAAAACCTGCTGCTATAGTTTTCGGCATGGGTTATGTCACCAACTCTGCTATCCTTCCTGTACTGATTGGAAAGGGAGGTTTGATTGTTAGTGATTCTTTGAATCATAACTCCATTGTTAATGGCGCACGAGGATCTGGAGCATCCATTTGTGTCTTCCAACACAACACTCCATCCCATTTGGATGAGGTTTTAAGAGAACAAATAGCAGAGGGACAACCTAGAACCCGCAGGCCTTGGAAAAAGATAATTGTCATTGTGGAGGGCATATACAGCATGGAAGGGGAGCTTTGCAAACTTCCTGAGATTATAGCAATCTGCAAGAAATATAAGGTCTATACGTATTTGGATGAGGCCCACAGTATTGGAGCTGTAGGAAAATCAGGACGAGGTGTTTGTGAGCTATTGGGAGTAGATACTGCTGATGTTGATATCATGATGGGAACATTTACCAAATCCTTCGGATCATGTGGTGGCTATATTGCAGGATCCAAGGACCTCATCCAATACCTGAAGTACACTTGCCCTGCTCATCTTTATGCAACTTCCATATCACCACCGGCTGCAGAACAAATAATATCATCCATTAAGGTCTTACTTGGAGAGGATGGTTCAAACAGAGGTGCCCAGAAACTCGCACGAATAAGGGAGAATAGCAACTTTTTCAGGTCAGAACTGCAGAAAATGGGTTTTGAGGTTTTGGGGGATAATGACTCCCCGGTAATGCCAATTATGCTGTACAACCCAGCCAAAATTCCTGCCTTCTCACGGGAATGCCTCAAACAGAATGTGGCTGTCGTGACAGTAGCCTTTCCTGCAACCCCACTGCTGTTGGCAAGGGCACGTATCTGTATATCTGCTTCTCATACAAGGGAAGACCTACAGAAAGCCTTGGAAGTTATTGGCAGAGTTGGTGATCTGGTGGGTATAAAATACTTCCCTGCTGAGCCAAAGAAGCTGCAGGAAGAAGAGAGGGTGCTGAAGTTGGACTGA

Protein Analysis

489

Amino Acids

54.06

Weight (kDa)

8.27

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 102 - 460 9.4e-51 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 1100
AccI GTMKAC 1 cut(s) 172
AccII CGCG 1 cut(s) 26
AciI CCGC 4 cut(s) 24, 345, 426, 706
AclI AACGTT 1 cut(s) 250
AclWI GGATC 5 cut(s) 325, 619, 949, 960, 973
AcsI RAATTY 4 cut(s) 92, 186, 469, 1230
AcuI CTGAAG 3 cut(s) 25, 70, 1010
AfaI GTAC 4 cut(s) 403, 540, 995, 1217
AfiI CCNNNNNNNGG 3 cut(s) 231, 313, 1245
AgsI TTSAA 6 cut(s) 155, 202, 248, 385, 580, 1092
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 6 cut(s) 45, 111, 766, 848, 880, 1435
AluI AGCT 6 cut(s) 45, 111, 766, 848, 880, 1435
Alw21I GWGCWC 2 cut(s) 113, 223
AlwI GGATC 5 cut(s) 325, 619, 949, 960, 973
AlwNI CAGNNNCTG 1 cut(s) 405
AoxI GGCC 3 cut(s) 206, 710, 831
ApeKI GCWGC 4 cut(s) 341, 488, 1040, 1435
ApoI RAATTY 4 cut(s) 92, 186, 469, 1230
ArsI GACNNNNNNTTYG 4 cut(s) 165, 197, 855, 887
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 2 cut(s) 832, 973
AsuC2I CCSGG 1 cut(s) 1196
AsuHPI GGTGA 3 cut(s) 508, 1023, 1403
AsuII TTCGAA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 973
BaeGI GKGCMC 2 cut(s) 1105, 1321
BamHI GGATCC 1 cut(s) 965
BanI GGYRCC 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 113
BarI GAAGNNNNNNTAC 2 cut(s) 1321, 1353
BauI CACGAG 2 cut(s) 366, 606
BbsI GAAGAC 2 cut(s) 625, 1359
Bbv12I GWGCWC 2 cut(s) 113, 223
BbvI GCAGC 4 cut(s) 328, 475, 1027, 1422
BccI CCATC 5 cut(s) 380, 416, 658, 910, 1079
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 1 cut(s) 1196
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 7 cut(s) 406, 492, 849, 1041, 1154, 1358, 1436
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
BlpI GCTNAGC 1 cut(s) 1422
BlsI GCNGC 6 cut(s) 343, 346, 428, 490, 1042, 1437
Bme1390I CCNGG 2 cut(s) 125, 1196
Bme18I GGWCC 1 cut(s) 973
BmgT120I GGNCC 2 cut(s) 832, 973
BmiI GGNNCC 2 cut(s) 967, 1102
BmrFI CCNGG 2 cut(s) 125, 1196
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 217, 293, 629
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 2 cut(s) 625, 1359
BpmI CTGGAG 3 cut(s) 107, 473, 636
Bpu1102I GCTNAGC 1 cut(s) 1422
Bpu14I TTCGAA 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 1196
BsaAI YACGTR 2 cut(s) 819, 1322
BsaJI CCNNGG 6 cut(s) 124, 331, 713, 969, 1194, 1368
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 313, 1245
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 3 cut(s) 107, 399, 456
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 6 cut(s) 124, 331, 713, 969, 1194, 1368
BseGI GGATG 8 cut(s) 372, 620, 650, 667, 832, 978, 1058, 1090
BseLI CCNNNNNNNGG 3 cut(s) 231, 313, 1245
BseMII CTCAG 2 cut(s) 771, 1413
BseNI ACTGG 3 cut(s) 107, 399, 456
BseRI GAGGAG 1 cut(s) 470
BseSI GKGCMC 2 cut(s) 1105, 1321
BseXI GCAGC 4 cut(s) 328, 475, 1027, 1422
BseYI CCCAGC 1 cut(s) 1222
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 208, 712, 833
BshNI GGYRCC 1 cut(s) 1100
BsiHKAI GWGCWC 2 cut(s) 113, 223
BsiSI CCGG 2 cut(s) 1037, 1196
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 3 cut(s) 231, 313, 1245
BsmFI GGGAC 1 cut(s) 705
BsmI GAATGC 1 cut(s) 1256
BsnI GGCC 3 cut(s) 208, 712, 833
Bsp119I TTCGAA 1 cut(s) 184
Bsp1286I GDGCHC 4 cut(s) 113, 223, 1105, 1321
Bsp1407I TGTACA 1 cut(s) 1215
Bsp143I GATC 5 cut(s) 317, 611, 941, 965, 1393
Bsp1720I GCTNAGC 1 cut(s) 1422
BspACI CCGC 4 cut(s) 24, 345, 426, 706
BspANI GGCC 3 cut(s) 208, 712, 833
BspCNI CTCAG 2 cut(s) 772, 1414
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 2 cut(s) 967, 1102
BspMAI CTGCAG 3 cut(s) 1045, 1158, 1440
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 5 cut(s) 325, 619, 949, 960, 973
BspQI GCTCTTC 1 cut(s) 62
BspT104I TTCGAA 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 1100
BsrFI RCCGGY 1 cut(s) 1036
BsrGI TGTACA 1 cut(s) 1215
BsrI ACTGG 3 cut(s) 107, 399, 456
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 6 cut(s) 124, 331, 713, 969, 1194, 1368
BssMI GATC 5 cut(s) 317, 611, 941, 965, 1393
BssSI CACGAG 2 cut(s) 366, 606
BssT1I CCWWGG 4 cut(s) 331, 713, 969, 1368
Bst2BI CACGAG 2 cut(s) 366, 606
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 3 cut(s) 197, 839, 1282
Bst6I CTCTTC 2 cut(s) 62, 1440
BstAUI TGTACA 1 cut(s) 1215
BstBAI YACGTR 2 cut(s) 819, 1322
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 3 cut(s) 53, 362, 710
BstDEI CTNAG 2 cut(s) 780, 1422
BstF5I GGATG 8 cut(s) 372, 620, 650, 667, 832, 978, 1058, 1090
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 5 cut(s) 320, 614, 944, 968, 1396
BstMBI GATC 5 cut(s) 317, 611, 941, 965, 1393
BstMWI GCNNNNNNNGC 5 cut(s) 227, 750, 1210, 1292, 1432
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 123, 1194
BstSFI CTRYAG 7 cut(s) 406, 492, 849, 1041, 1154, 1358, 1436
BstSLI GKGCMC 2 cut(s) 1105, 1321
BstSNI TACGTA 1 cut(s) 819
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 4 cut(s) 328, 475, 1027, 1422
BstV2I GAAGAC 2 cut(s) 625, 1359
BstX2I RGATCY 3 cut(s) 317, 611, 965
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 3 cut(s) 317, 611, 965
BsuRI GGCC 3 cut(s) 208, 712, 833
BtsCI GGATG 8 cut(s) 372, 620, 650, 667, 832, 978, 1058, 1090
BtsI GCAGTG 1 cut(s) 1301
BtsIMutI CAGTG 1 cut(s) 1301
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 3 cut(s) 53, 362, 710
CaiI CAGNNNCTG 1 cut(s) 405
CciI TCATGA 1 cut(s) 912
CfoI GCGC 1 cut(s) 605
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 2 cut(s) 832, 973
Csp6I GTAC 4 cut(s) 402, 539, 994, 1216
CspCI CAANNNNNGTGG 2 cut(s) 1290, 1325
CviAII CATG 4 cut(s) 505, 754, 913, 945
CviQI GTAC 4 cut(s) 402, 539, 994, 1216
DdeI CTNAG 2 cut(s) 780, 1422
DpnI GATC 5 cut(s) 319, 613, 943, 967, 1395
DpnII GATC 5 cut(s) 317, 611, 941, 965, 1393
Eam1104I CTCTTC 2 cut(s) 62, 1440
EarI CTCTTC 2 cut(s) 62, 1440
Ecl136II GAGCTC 1 cut(s) 111
Eco105I TACGTA 1 cut(s) 819
Eco130I CCWWGG 4 cut(s) 331, 713, 969, 1368
Eco147I AGGCCT 2 cut(s) 208, 712
Eco24I GRGCYC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 1 cut(s) 973
Eco53kI GAGCTC 1 cut(s) 111
Eco57I CTGAAG 3 cut(s) 25, 70, 1010
EcoICRI GAGCTC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 973
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 4 cut(s) 331, 713, 969, 1368
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 4 cut(s) 331, 713, 969, 1368
FaeI CATG 4 cut(s) 508, 757, 916, 948
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 705
FatI CATG 4 cut(s) 504, 753, 912, 944
FauI CCCGC 1 cut(s) 713
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
FokI GGATG 8 cut(s) 359, 607, 637, 674, 839, 965, 1045, 1097
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
FspBI CTAG 1 cut(s) 699
GlaI GCGC 1 cut(s) 604
GluI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
GsaI CCCAGC 1 cut(s) 1226
GsuI CTGGAG 3 cut(s) 107, 473, 636
HaeIII GGCC 3 cut(s) 208, 712, 833
HapII CCGG 2 cut(s) 1037, 1196
HhaI GCGC 1 cut(s) 605
Hin1II CATG 4 cut(s) 508, 757, 916, 948
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HincII GTYRAC 2 cut(s) 30, 173
HindII GTYRAC 2 cut(s) 30, 173
HinfI GANTC 4 cut(s) 174, 572, 580, 1190
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 2 cut(s) 1037, 1196
HphI GGTGA 3 cut(s) 508, 1023, 1403
Hpy166II GTNNAC 3 cut(s) 30, 173, 996
Hpy188I TCNGA 4 cut(s) 77, 89, 941, 1150
Hpy188III TCNNGA 8 cut(s) 191, 224, 376, 615, 779, 861, 913, 1276
Hpy8I GTNNAC 3 cut(s) 30, 173, 996
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 4 cut(s) 542, 752, 946, 1249
HpyCH4III ACNGT 3 cut(s) 197, 839, 1282
HpyCH4IV ACGT 4 cut(s) 165, 250, 818, 1321
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 750, 1210, 1292, 1432
HpyF3I CTNAG 2 cut(s) 780, 1422
HpySE526I ACGT 4 cut(s) 165, 250, 818, 1321
Hsp92II CATG 4 cut(s) 508, 757, 916, 948
HspAI GCGC 1 cut(s) 603
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 317, 611, 941, 965, 1393
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 6 cut(s) 108, 139, 226, 617, 763, 845
Lsp1109I GCAGC 4 cut(s) 328, 475, 1027, 1422
LweI GCATC 3 cut(s) 217, 293, 629
MaeI CTAG 1 cut(s) 699
MaeII ACGT 4 cut(s) 165, 250, 818, 1321
MaeIII GTNAC 3 cut(s) 251, 514, 1276
MalI GATC 5 cut(s) 319, 613, 943, 967, 1395
MboI GATC 5 cut(s) 317, 611, 941, 965, 1393
MboII GAAGA 9 cut(s) 49, 76, 167, 173, 397, 625, 1364, 1454, 1457
MflI RGATCY 3 cut(s) 317, 611, 965
MhlI GDGCHC 4 cut(s) 113, 223, 1105, 1321
MluCI AATT 7 cut(s) 9, 92, 186, 469, 726, 1206, 1230
MlyI GAGTC 2 cut(s) 168, 1184
MmeI TCCRAC 3 cut(s) 457, 661, 1443
MseI TTAA 5 cut(s) 29, 309, 597, 671, 1065
MslI CAYNNNNRTG 3 cut(s) 660, 1014, 1249
MspI CCGG 2 cut(s) 1037, 1196
MspR9I CCNGG 2 cut(s) 125, 1196
Mva1269I GAATGC 1 cut(s) 1256
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 227, 750, 1210, 1292, 1432
NciI CCSGG 1 cut(s) 1196
NdeII GATC 5 cut(s) 317, 611, 941, 965, 1393
NlaIII CATG 4 cut(s) 508, 757, 916, 948
NlaIV GGNNCC 2 cut(s) 967, 1102
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 2 cut(s) 514, 1276
NspV TTCGAA 1 cut(s) 184
PagI TCATGA 1 cut(s) 912
PceI AGGCCT 2 cut(s) 208, 712
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 1 cut(s) 1256
PfeI GAWTC 2 cut(s) 572, 580
PkrI GCNGC 6 cut(s) 343, 346, 428, 490, 1042, 1437
PleI GAGTC 2 cut(s) 168, 1184
PpsI GAGTC 2 cut(s) 168, 1184
Ppu21I YACGTR 2 cut(s) 819, 1322
PpuMI RGGWCCY 1 cut(s) 973
PsiI TTATAA 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 113
Psp1406I AACGTT 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 973
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 1222
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 967, 1102
PspPI GGNCC 2 cut(s) 832, 973
PspPPI RGGWCCY 1 cut(s) 973
PstI CTGCAG 3 cut(s) 1045, 1158, 1440
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 3 cut(s) 317, 611, 965
RsaI GTAC 4 cut(s) 403, 540, 995, 1217
RsaNI GTAC 4 cut(s) 402, 539, 994, 1216
RseI CAYNNNNRTG 3 cut(s) 660, 1014, 1249
SacI GAGCTC 1 cut(s) 113
SalI GTCGAC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 5 cut(s) 29, 309, 597, 671, 1065
SatI GCNGC 6 cut(s) 342, 345, 427, 489, 1041, 1436
Sau3AI GATC 5 cut(s) 317, 611, 941, 965, 1393
Sau96I GGNCC 2 cut(s) 832, 973
SchI GAGTC 2 cut(s) 168, 1184
ScrFI CCNGG 2 cut(s) 125, 1196
SduI GDGCHC 4 cut(s) 113, 223, 1105, 1321
SfaNI GCATC 3 cut(s) 217, 293, 629
SfcI CTRYAG 7 cut(s) 406, 492, 849, 1041, 1154, 1358, 1436
SfuI TTCGAA 1 cut(s) 184
SinI GGWCC 1 cut(s) 973
SmiMI CAYNNNNRTG 3 cut(s) 660, 1014, 1249
SnaBI TACGTA 1 cut(s) 819
Sse9I AATT 7 cut(s) 9, 92, 186, 469, 726, 1206, 1230
SseBI AGGCCT 2 cut(s) 208, 712
SsiI CCGC 4 cut(s) 24, 345, 426, 706
SspI AATATT 2 cut(s) 356, 392
SspMI CTAG 1 cut(s) 699
SstI GAGCTC 1 cut(s) 113
StuI AGGCCT 2 cut(s) 208, 712
StyD4I CCNGG 2 cut(s) 123, 1194
StyI CCWWGG 4 cut(s) 331, 713, 969, 1368
TaaI ACNGT 3 cut(s) 197, 839, 1282
TaiI ACGT 4 cut(s) 168, 253, 821, 1324
TaqI TCGA 3 cut(s) 99, 172, 184
TasI AATT 7 cut(s) 9, 92, 186, 469, 726, 1206, 1230
TatI WGTACW 3 cut(s) 538, 993, 1215
TauI GCSGC 2 cut(s) 347, 429
TfiI GAWTC 2 cut(s) 572, 580
Tru1I TTAA 5 cut(s) 29, 309, 597, 671, 1065
Tru9I TTAA 5 cut(s) 29, 309, 597, 671, 1065
TscAI CASTG 1 cut(s) 1308
TseFI GTSAC 2 cut(s) 514, 1276
TseI GCWGC 4 cut(s) 341, 488, 1040, 1435
Tsp45I GTSAC 2 cut(s) 514, 1276
TspDTI ATGAA 3 cut(s) 85, 366, 462
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 1308
VpaK11BI GGWCC 1 cut(s) 973
XapI RAATTY 4 cut(s) 92, 186, 469, 1230
XmiI GTMKAC 1 cut(s) 172
XspI CTAG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.