Rw2G055090

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
82625046 .. 82628404
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G055090.1

Sequence Viewer

Length: 1479 bp
ATGATTGCAATTCCCTATTTGACCGCGTTAACCACCTACTTCAGCTATGGCTTGCTCTTCGCTTTTGGGCAAGTCAGAGATTTCTTCAGAAAATTCATCGACTGGTGGAGCTCTAATAATCTCCAGGGTTATGCTCCAATCTGTTTAGGACTTGAAGATTTCTACGTCCGTCGTCTCTATCTTCGAATTCAGGACTGTTTCAATAGGCCTATTGCAAGTGCTCCCGATGCTTGGTTTGATGTGGTTGAACGTTACTCCAATGACTACAACAAGACACTCAAACTAACCTCAAACACAAGCCGATGCCTTAACTTGGGATCTTATAACTACCTTGGCTTTGCTGCCGCCGATGAATATTGCACGCCTCGTGCCATCCAGACATTGAAGAAATATTCTCCCAGTACCTGTAGTAGCCGACATAATGCGCTATCTTCCAACAGGCACTACGCTTTGCACAATGAACTGGAGAAGTGTGTTGCAAATTTTGTTGGAAAACCTGCTGCTATAGTTTTCGGCATGGGTTATGTCACCAACTCTGCTATCCTTCCTGTACTGATTGGAAAGGGAGGTTTGATTGTTAGTGATTCTTTGAATCATAACTCCATTGTTAATGGCGCACGAGGATCTGGAGCATCCATTTGTGTCTTCCAACACAACACTCCATCCCATTTGGATGAGGTTTTAAGAGAACAAATAGCAGAGGGACAACCTAGAACCCGCAGGCCTTGGAAAAAGATTATTGTCATTGTGGAGGGCATATACAGCATGGAAGGGGAGCTTTGCAAACTTCCTGAGATTATAGCAATCTGCAAGAAATATAAGGTCTATACGTATTTGGATGAGGCCCACAGTATTGGAGCTGTAGGAAAATCAGGACGAGGTGTTTGTGAGCTCTTGGGAGTAGATACTGCTGATGTTGATATCATGATGGGAACATTTACCAAATCCTTCGGATCATGTGGTGGCTATATTGCAGGATCCAAGGACCTCATCCAATACCTGAAGTACACTTGCCCCGCTCATCTTTATGCAACTTCCATATCACCACCGGCTGCAGAACAAATAATATCATCCATTAAGGTCTTACTTGGAGAGGATGGTTCTAACAGAGGTGCCCAGAAACTCGCACGAATAAGGGAGAATAGCAACTTTTTCAGGTCAGAACTGCAAAAAATGGGTTTTGAGGTTTTGGGGGATAATGACTCCCCGGTAATGCCAATTATGCTGTACAACCCAGCCAAAATTCCTGCCTTCTCACGGGAGTGCCTCAAACAGAATGTAGCTGTTGTGACAGTAGCCTTTCCTGCAACCCCACTGCTGTTGGCAAGGGCACGTATCTGTATATCTGCTTCTCATACAAGGGAAGACCTACAGAAAGCCTTGGACGTTATTGGCAGAGTTGGTGATCTGGTGGGTATAAAATACTTCCCTGCTGAGCCAAAGAAGCTGCAGGAAGAAGAGCCGCTGAAGTTGGACTGA

Protein Analysis

492

Amino Acids

54.54

Weight (kDa)

8.61

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 102 - 464 8.5e-50 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 1112
AccBSI CCGCTC 1 cut(s) 1019
AccII CGCG 1 cut(s) 26
AciI CCGC 5 cut(s) 24, 345, 718, 1017, 1463
AclI AACGTT 1 cut(s) 250
AclWI GGATC 5 cut(s) 325, 631, 961, 972, 985
AcsI RAATTY 4 cut(s) 92, 186, 481, 1242
AcuI CTGAAG 3 cut(s) 25, 70, 1022
AfaI GTAC 4 cut(s) 403, 552, 1007, 1229
AfiI CCNNNNNNNGG 3 cut(s) 231, 313, 1257
AgsI TTSAA 5 cut(s) 155, 202, 248, 385, 592
AjnI CCWGG 1 cut(s) 123
AleI CACNNNNGTG 1 cut(s) 1261
AluBI AGCT 7 cut(s) 45, 111, 778, 860, 892, 1283, 1447
AluI AGCT 7 cut(s) 45, 111, 778, 860, 892, 1283, 1447
Alw21I GWGCWC 3 cut(s) 113, 223, 894
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 5 cut(s) 325, 631, 961, 972, 985
AlwNI CAGNNNCTG 1 cut(s) 405
AoxI GGCC 3 cut(s) 206, 722, 843
ApeKI GCWGC 4 cut(s) 341, 500, 1052, 1447
ApoI RAATTY 4 cut(s) 92, 186, 481, 1242
ArsI GACNNNNNNTTYG 2 cut(s) 867, 899
AspLEI GCGC 2 cut(s) 427, 617
AspS9I GGNCC 2 cut(s) 844, 985
AsuC2I CCSGG 1 cut(s) 1208
AsuHPI GGTGA 3 cut(s) 520, 1035, 1415
AsuII TTCGAA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 985
BaeGI GKGCMC 2 cut(s) 1117, 1333
BamHI GGATCC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 1112
BanII GRGCYC 2 cut(s) 113, 894
BarI GAAGNNNNNNTAC 2 cut(s) 1333, 1365
BauI CACGAG 2 cut(s) 366, 618
BbsI GAAGAC 2 cut(s) 637, 1371
Bbv12I GWGCWC 3 cut(s) 113, 223, 894
BbvI GCAGC 4 cut(s) 328, 487, 1039, 1434
BccI CCATC 4 cut(s) 380, 670, 922, 1091
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 1 cut(s) 1208
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 6 cut(s) 406, 504, 861, 1053, 1370, 1448
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 6 cut(s) 342, 345, 501, 1053, 1448, 1463
BlpI GCTNAGC 1 cut(s) 1434
BlsI GCNGC 6 cut(s) 343, 346, 502, 1054, 1449, 1464
Bme1390I CCNGG 2 cut(s) 125, 1208
Bme18I GGWCC 1 cut(s) 985
BmgT120I GGNCC 2 cut(s) 844, 985
BmiI GGNNCC 2 cut(s) 979, 1114
BmrFI CCNGG 2 cut(s) 125, 1208
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 217, 293, 641
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 2 cut(s) 637, 1371
BpmI CTGGAG 3 cut(s) 107, 485, 648
Bpu1102I GCTNAGC 1 cut(s) 1434
Bpu14I TTCGAA 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 1208
BsaAI YACGTR 2 cut(s) 831, 1334
BsaJI CCNNGG 6 cut(s) 124, 331, 725, 981, 1206, 1380
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 313, 1257
Bse118I RCCGGY 1 cut(s) 1048
Bse1I ACTGG 3 cut(s) 107, 399, 468
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 6 cut(s) 124, 331, 725, 981, 1206, 1380
BseGI GGATG 8 cut(s) 372, 632, 662, 679, 844, 990, 1070, 1102
BseLI CCNNNNNNNGG 3 cut(s) 231, 313, 1257
BseMII CTCAG 2 cut(s) 783, 1425
BseNI ACTGG 3 cut(s) 107, 399, 468
BseSI GKGCMC 2 cut(s) 1117, 1333
BseXI GCAGC 4 cut(s) 328, 487, 1039, 1434
BseYI CCCAGC 1 cut(s) 1234
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 208, 724, 845
BshNI GGYRCC 1 cut(s) 1112
BsiHKAI GWGCWC 3 cut(s) 113, 223, 894
BsiSI CCGG 2 cut(s) 1049, 1208
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 3 cut(s) 231, 313, 1257
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 717
BsnI GGCC 3 cut(s) 208, 724, 845
Bsp119I TTCGAA 1 cut(s) 184
Bsp1286I GDGCHC 5 cut(s) 113, 223, 894, 1117, 1333
Bsp1407I TGTACA 1 cut(s) 1227
Bsp143I GATC 5 cut(s) 317, 623, 953, 977, 1405
Bsp1720I GCTNAGC 1 cut(s) 1434
BspACI CCGC 5 cut(s) 24, 345, 718, 1017, 1463
BspANI GGCC 3 cut(s) 208, 724, 845
BspCNI CTCAG 2 cut(s) 784, 1426
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 2 cut(s) 979, 1114
BspMAI CTGCAG 2 cut(s) 1057, 1452
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 5 cut(s) 325, 631, 961, 972, 985
BspQI GCTCTTC 2 cut(s) 62, 1452
BspT104I TTCGAA 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 1112
BsrBI CCGCTC 1 cut(s) 1019
BsrFI RCCGGY 1 cut(s) 1048
BsrGI TGTACA 1 cut(s) 1227
BsrI ACTGG 3 cut(s) 107, 399, 468
BssAI RCCGGY 1 cut(s) 1048
BssECI CCNNGG 6 cut(s) 124, 331, 725, 981, 1206, 1380
BssMI GATC 5 cut(s) 317, 623, 953, 977, 1405
BssSI CACGAG 2 cut(s) 366, 618
BssT1I CCWWGG 4 cut(s) 331, 725, 981, 1380
Bst2BI CACGAG 2 cut(s) 366, 618
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 3 cut(s) 197, 851, 1294
Bst6I CTCTTC 2 cut(s) 62, 1452
BstAUI TGTACA 1 cut(s) 1227
BstBAI YACGTR 2 cut(s) 831, 1334
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 3 cut(s) 53, 362, 722
BstDEI CTNAG 2 cut(s) 792, 1434
BstF5I GGATG 8 cut(s) 372, 632, 662, 679, 844, 990, 1070, 1102
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 2 cut(s) 427, 617
BstKTI GATC 5 cut(s) 320, 626, 956, 980, 1408
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 5 cut(s) 317, 623, 953, 977, 1405
BstMWI GCNNNNNNNGC 5 cut(s) 227, 762, 1222, 1304, 1444
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 123, 1206
BstSFI CTRYAG 6 cut(s) 406, 504, 861, 1053, 1370, 1448
BstSLI GKGCMC 2 cut(s) 1117, 1333
BstSNI TACGTA 1 cut(s) 831
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 4 cut(s) 328, 487, 1039, 1434
BstV2I GAAGAC 2 cut(s) 637, 1371
BstX2I RGATCY 3 cut(s) 317, 623, 977
BstXI CCANNNNNNTGG 1 cut(s) 854
BstYI RGATCY 3 cut(s) 317, 623, 977
BsuRI GGCC 3 cut(s) 208, 724, 845
BtsCI GGATG 8 cut(s) 372, 632, 662, 679, 844, 990, 1070, 1102
BtsI GCAGTG 1 cut(s) 1313
BtsIMutI CAGTG 1 cut(s) 1313
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 3 cut(s) 53, 362, 722
CaiI CAGNNNCTG 1 cut(s) 405
CciI TCATGA 1 cut(s) 924
CfoI GCGC 2 cut(s) 427, 617
Cfr10I RCCGGY 1 cut(s) 1048
Cfr13I GGNCC 2 cut(s) 844, 985
Csp6I GTAC 4 cut(s) 402, 551, 1006, 1228
CspCI CAANNNNNGTGG 2 cut(s) 1302, 1337
CviAII CATG 4 cut(s) 517, 766, 925, 957
CviQI GTAC 4 cut(s) 402, 551, 1006, 1228
DdeI CTNAG 2 cut(s) 792, 1434
DpnI GATC 5 cut(s) 319, 625, 955, 979, 1407
DpnII GATC 5 cut(s) 317, 623, 953, 977, 1405
Eam1104I CTCTTC 2 cut(s) 62, 1452
EarI CTCTTC 2 cut(s) 62, 1452
Ecl136II GAGCTC 2 cut(s) 111, 892
Eco105I TACGTA 1 cut(s) 831
Eco130I CCWWGG 4 cut(s) 331, 725, 981, 1380
Eco147I AGGCCT 2 cut(s) 208, 724
Eco24I GRGCYC 2 cut(s) 113, 894
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 1 cut(s) 985
Eco53kI GAGCTC 2 cut(s) 111, 892
Eco57I CTGAAG 3 cut(s) 25, 70, 1022
EcoICRI GAGCTC 2 cut(s) 111, 892
EcoO109I RGGNCCY 1 cut(s) 985
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 4 cut(s) 331, 725, 981, 1380
EcoT38I GRGCYC 2 cut(s) 113, 894
ErhI CCWWGG 4 cut(s) 331, 725, 981, 1380
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 4 cut(s) 520, 769, 928, 960
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 1 cut(s) 717
FatI CATG 4 cut(s) 516, 765, 924, 956
FauI CCCGC 2 cut(s) 725, 1024
Fnu4HI GCNGC 6 cut(s) 342, 345, 501, 1053, 1448, 1463
FokI GGATG 8 cut(s) 359, 619, 649, 686, 851, 977, 1057, 1109
FriOI GRGCYC 2 cut(s) 113, 894
Fsp4HI GCNGC 6 cut(s) 342, 345, 501, 1053, 1448, 1463
FspBI CTAG 1 cut(s) 711
GlaI GCGC 2 cut(s) 426, 616
GluI GCNGC 6 cut(s) 342, 345, 501, 1053, 1448, 1463
GsaI CCCAGC 1 cut(s) 1238
GsuI CTGGAG 3 cut(s) 107, 485, 648
HaeIII GGCC 3 cut(s) 208, 724, 845
HapII CCGG 2 cut(s) 1049, 1208
HhaI GCGC 2 cut(s) 427, 617
Hin1II CATG 4 cut(s) 520, 769, 928, 960
Hin6I GCGC 2 cut(s) 425, 615
HinP1I GCGC 2 cut(s) 425, 615
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 3 cut(s) 584, 592, 1202
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 2 cut(s) 1049, 1208
HphI GGTGA 3 cut(s) 520, 1035, 1415
Hpy166II GTNNAC 2 cut(s) 30, 1008
Hpy188I TCNGA 4 cut(s) 77, 89, 953, 1162
Hpy188III TCNNGA 7 cut(s) 191, 224, 376, 627, 791, 873, 925
Hpy8I GTNNAC 2 cut(s) 30, 1008
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 4 cut(s) 554, 764, 958, 1261
HpyCH4III ACNGT 3 cut(s) 197, 851, 1294
HpyCH4IV ACGT 5 cut(s) 165, 250, 830, 1333, 1386
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 762, 1222, 1304, 1444
HpyF3I CTNAG 2 cut(s) 792, 1434
HpySE526I ACGT 5 cut(s) 165, 250, 830, 1333, 1386
Hsp92II CATG 4 cut(s) 520, 769, 928, 960
HspAI GCGC 2 cut(s) 425, 615
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 317, 623, 953, 977, 1405
LguI GCTCTTC 2 cut(s) 62, 1452
LmnI GCTCC 6 cut(s) 108, 139, 226, 629, 775, 857
Lsp1109I GCAGC 4 cut(s) 328, 487, 1039, 1434
LweI GCATC 3 cut(s) 217, 293, 641
MaeI CTAG 1 cut(s) 711
MaeII ACGT 5 cut(s) 165, 250, 830, 1333, 1386
MaeIII GTNAC 3 cut(s) 251, 526, 1288
MalI GATC 5 cut(s) 319, 625, 955, 979, 1407
MbiI CCGCTC 1 cut(s) 1019
MboI GATC 5 cut(s) 317, 623, 953, 977, 1405
MflI RGATCY 3 cut(s) 317, 623, 977
MhlI GDGCHC 5 cut(s) 113, 223, 894, 1117, 1333
MluCI AATT 6 cut(s) 9, 92, 186, 481, 1218, 1242
MlyI GAGTC 1 cut(s) 1196
MmeI TCCRAC 4 cut(s) 459, 469, 673, 1452
MseI TTAA 5 cut(s) 29, 309, 609, 683, 1077
MslI CAYNNNNRTG 3 cut(s) 672, 1026, 1261
MspA1I CMGCKG 1 cut(s) 1465
MspI CCGG 2 cut(s) 1049, 1208
MspR9I CCNGG 2 cut(s) 125, 1208
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 227, 762, 1222, 1304, 1444
NciI CCSGG 1 cut(s) 1208
NdeII GATC 5 cut(s) 317, 623, 953, 977, 1405
NlaIII CATG 4 cut(s) 520, 769, 928, 960
NlaIV GGNNCC 2 cut(s) 979, 1114
NmuCI GTSAC 2 cut(s) 526, 1288
NspV TTCGAA 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 1261
PagI TCATGA 1 cut(s) 924
PceI AGGCCT 2 cut(s) 208, 724
PciSI GCTCTTC 2 cut(s) 62, 1452
PfeI GAWTC 2 cut(s) 584, 592
PkrI GCNGC 6 cut(s) 343, 346, 502, 1054, 1449, 1464
PleI GAGTC 1 cut(s) 1196
PpsI GAGTC 1 cut(s) 1196
Ppu21I YACGTR 2 cut(s) 831, 1334
PpuMI RGGWCCY 1 cut(s) 985
PsiI TTATAA 1 cut(s) 324
Psp124BI GAGCTC 2 cut(s) 113, 894
Psp1406I AACGTT 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 985
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 1234
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 979, 1114
PspPI GGNCC 2 cut(s) 844, 985
PspPPI RGGWCCY 1 cut(s) 985
PstI CTGCAG 2 cut(s) 1057, 1452
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 3 cut(s) 317, 623, 977
RsaI GTAC 4 cut(s) 403, 552, 1007, 1229
RsaNI GTAC 4 cut(s) 402, 551, 1006, 1228
RseI CAYNNNNRTG 3 cut(s) 672, 1026, 1261
SacI GAGCTC 2 cut(s) 113, 894
SapI GCTCTTC 2 cut(s) 62, 1452
SaqAI TTAA 5 cut(s) 29, 309, 609, 683, 1077
SatI GCNGC 6 cut(s) 342, 345, 501, 1053, 1448, 1463
Sau3AI GATC 5 cut(s) 317, 623, 953, 977, 1405
Sau96I GGNCC 2 cut(s) 844, 985
SchI GAGTC 1 cut(s) 1196
ScrFI CCNGG 2 cut(s) 125, 1208
SduI GDGCHC 5 cut(s) 113, 223, 894, 1117, 1333
SfaNI GCATC 3 cut(s) 217, 293, 641
SfcI CTRYAG 6 cut(s) 406, 504, 861, 1053, 1370, 1448
SfuI TTCGAA 1 cut(s) 184
SinI GGWCC 1 cut(s) 985
SmiMI CAYNNNNRTG 3 cut(s) 672, 1026, 1261
SnaBI TACGTA 1 cut(s) 831
Sse9I AATT 6 cut(s) 9, 92, 186, 481, 1218, 1242
SseBI AGGCCT 2 cut(s) 208, 724
SsiI CCGC 5 cut(s) 24, 345, 718, 1017, 1463
SspI AATATT 2 cut(s) 356, 392
SspMI CTAG 1 cut(s) 711
SstI GAGCTC 2 cut(s) 113, 894
StuI AGGCCT 2 cut(s) 208, 724
StyD4I CCNGG 2 cut(s) 123, 1206
StyI CCWWGG 4 cut(s) 331, 725, 981, 1380
TaaI ACNGT 3 cut(s) 197, 851, 1294
TaiI ACGT 5 cut(s) 168, 253, 833, 1336, 1389
TaqI TCGA 2 cut(s) 99, 184
TasI AATT 6 cut(s) 9, 92, 186, 481, 1218, 1242
TatI WGTACW 3 cut(s) 550, 1005, 1227
TauI GCSGC 2 cut(s) 347, 1465
TfiI GAWTC 2 cut(s) 584, 592
Tru1I TTAA 5 cut(s) 29, 309, 609, 683, 1077
Tru9I TTAA 5 cut(s) 29, 309, 609, 683, 1077
TscAI CASTG 1 cut(s) 1320
TseFI GTSAC 2 cut(s) 526, 1288
TseI GCWGC 4 cut(s) 341, 500, 1052, 1447
Tsp45I GTSAC 2 cut(s) 526, 1288
TspDTI ATGAA 3 cut(s) 85, 366, 474
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 1320
VpaK11BI GGWCC 1 cut(s) 985
XapI RAATTY 4 cut(s) 92, 186, 481, 1242
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.