Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007856

Physical Location & Seq

Genomic Coordinates Forward (+)

18093267 .. 18095329

Gene Structure 2063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTTGTTTCTGCTATCAGGAACTACAGCTGTGCATGGAGAACTTGAGGAATGTGTTGCTAAATTTGTGGGAAAACCTGCTGCTGTTGTTTTTGGCATGGGCTACTTAACAAACTCGGCTATCATTTCTGTCTTGATTGGCAAGGGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACATATTGAAAGAACATATCATTGAGGGACAACCAAGGACACACAGACCGTGGAAGAAAATTATCGTTGTTGTTGAAGGTATTTATAGCATGGAAGGGGAAATCTGTGATCTACCGGAGATTGTTTCAGTATGCAGTGAGTATAAGGCATATGTTTATTTGGACGAAGCTCATAGCATTGGAGCAATTGGCAAAACAGGACGAGGTGTTTGTGAACTCCTAGGAGTTGACACTACTGAAGTGGACATTATGATGGGCACTTTCACGAAATCTCTCGGGTCTTGTGGTGGCTACATTGCCGGATCCAAGGACCTTGTCCAATATTTGAAGCAACATTACCCTGCTCACCTTTACGCAACATCAATTTCAACTCCTGCTGCACAACAAGTCATATCGGCCATAAAAGTCATCTTTGGAGTGGACGGTTCAAACAGAGGGGAACTAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTCAAGGTCCTTGGAGTTTATGATTCCCCAATCATGCCAATAATGCTTTACAATCCAGCAAAAATCGCAGCCTTCTCAAGGGAATGTTTGCGAGAAAACTTGGCAATCGTGGTAGTCAGTTTCCCACCTATACCTCTATTGCTAGCCAGGGCTCGTATTTGCAATTCCGCATCTCACTTAAGAGAAGATCTTATTAAAGCCCTGCAGGTTATAAGCAGAGCAGGTGACCTTACCGGGATCAAATATTTTACGGCAGCTCCAAAGAAGCAAGAAGAGAAAAATGGCAATACTTCAAAGTTCAAACTAAGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0003674 GO:0003824 GO:0004758 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006665 GO:0006670 GO:0006672 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0016408 GO:0016409 GO:0016454 GO:0016740 GO:0016746 GO:0016747 GO:0017059 GO:0019222 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

350

Amino Acids

38.1

Weight (kDa)

9.03

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	5 - 317	4.6e-40	Aminotransferase class I and II
Beta_elim_lyase	PF01212	14 - 186	4.5e-06	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48780 AT3G48780 AT3G48790 AT3G48790 AT5G23670 AT5G23670
fragaria_vesca	FvH4_6g54160
malus_domestica	MD09G1004800.v1.1 MD17G1008800.v1.1
prunus_persica	Prupe.3G312000_v2.0.a1 Prupe.5G144700_v2.0.a1
pyrus_communis	pycom111g00350 pycom17g00370
rosa_chinensis	RchiOBHm_Chr2g0176331
rosa_laevigata	RLG00000022404
rosa_multiflora	Rmu_sc0019886.1_g000001 Rmu_sc0027060.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076560
rosa_rugosa	Rorug02G0593300
rosa_samantha	Rh2AG671800 Rh2BG683300 Rh2CG646000 Rh2DG696800
rosa_wichuraiana	Rw2G055090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	950
AarI	CACCTGC	1 cut(s)	950
Acc36I	ACCTGC	3 cut(s)	85, 934, 950
AccII	CGCG	1 cut(s)	222
AciI	CCGC	2 cut(s)	220, 906
AclWI	GGATC	3 cut(s)	531, 544, 983
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	816
AflII	CTTAAG	1 cut(s)	916
AjnI	CCWGG	1 cut(s)	884
AluBI	AGCT	3 cut(s)	29, 404, 995
AluI	AGCT	3 cut(s)	29, 404, 995
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	3 cut(s)	531, 544, 983
Ama87I	CYCGRG	2 cut(s)	198, 509
AoxI	GGCC	1 cut(s)	630
ApeKI	GCWGC	4 cut(s)	80, 611, 806, 992
ApoI	RAATTY	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AspA2I	CCTAGG	1 cut(s)	454
AspS9I	GGNCC	2 cut(s)	544, 745
AsuC2I	CCSGG	1 cut(s)	973
AsuHPI	GGTGA	2 cut(s)	572, 974
AsuNHI	GCTAGC	1 cut(s)	880
AvaI	CYCGRG	2 cut(s)	198, 509
AvaII	GGWCC	2 cut(s)	544, 745
AvrII	CCTAGG	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	892
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	67, 598, 818, 1004
BccI	CCATC	2 cut(s)	481, 727
BceAI	ACGGC	1 cut(s)	1005
BciT130I	CCWGG	1 cut(s)	886
BcnI	CCSGG	1 cut(s)	973
BfaI	CTAG	2 cut(s)	455, 881
BfmI	CTRYAG	2 cut(s)	24, 941
BfrI	CTTAAG	1 cut(s)	916
BfuAI	ACCTGC	3 cut(s)	85, 934, 950
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	4 cut(s)	81, 612, 807, 993
BlnI	CCTAGG	1 cut(s)	454
BlsI	GCNGC	4 cut(s)	82, 613, 808, 994
Bme1390I	CCNGG	2 cut(s)	886, 973
Bme18I	GGWCC	2 cut(s)	544, 745
BmeT110I	CYCGRG	2 cut(s)	198, 509
BmgT120I	GGNCC	2 cut(s)	544, 745
BmiI	GGNNCC	2 cut(s)	211, 538
BmrFI	CCNGG	2 cut(s)	886, 973
BmsI	GCATC	1 cut(s)	917
BmtI	GCTAGC	1 cut(s)	884
BpuEI	CTTGAG	2 cut(s)	65, 799
BpuMI	CCSGG	1 cut(s)	973
BsaJI	CCNNGG	6 cut(s)	269, 284, 454, 540, 748, 885
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	979, 1009
Bsc4I	CCNNNNNNNGG	1 cut(s)	816
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	886
BseDI	CCNNGG	6 cut(s)	269, 284, 454, 540, 748, 885
BseLI	CCNNNNNNNGG	1 cut(s)	816
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	711
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	4 cut(s)	67, 598, 818, 1004
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	2 cut(s)	198, 509
BsiSI	CCGG	3 cut(s)	350, 534, 972
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	816
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	632
BsoBI	CYCGRG	2 cut(s)	198, 509
Bsp1286I	GDGCHC	3 cut(s)	199, 494, 892
Bsp143I	GATC	4 cut(s)	343, 536, 925, 975
BspACI	CCGC	2 cut(s)	220, 906
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	1 cut(s)	712
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	211, 538
BspMAI	CTGCAG	1 cut(s)	945
BspMI	ACCTGC	3 cut(s)	85, 934, 950
BspOI	GCTAGC	1 cut(s)	884
BspPI	GGATC	3 cut(s)	531, 544, 983
BspTI	CTTAAG	1 cut(s)	916
BsrDI	GCAATG	1 cut(s)	528
BssECI	CCNNGG	6 cut(s)	269, 284, 454, 540, 748, 885
BssMI	GATC	4 cut(s)	343, 536, 925, 975
BssT1I	CCWWGG	4 cut(s)	269, 454, 540, 748
Bst2UI	CCWGG	1 cut(s)	886
Bst4CI	ACNGT	2 cut(s)	285, 659
Bst6I	CTCTTC	1 cut(s)	1005
BstAFI	CTTAAG	1 cut(s)	916
BstC8I	GCNNGC	1 cut(s)	882
BstDEI	CTNAG	2 cut(s)	720, 1043
BstDSI	CCRYGG	1 cut(s)	284
BstEII	GGTNACC	1 cut(s)	962
BstENI	CCTNNNNNAGG	1 cut(s)	814
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	4 cut(s)	346, 539, 928, 978
BstMBI	GATC	4 cut(s)	343, 536, 925, 975
BstMWI	GCNNNNNNNGC	2 cut(s)	781, 803
BstNI	CCWGG	1 cut(s)	886
BstPI	GGTNACC	1 cut(s)	962
BstSCI	CCNGG	2 cut(s)	884, 971
BstSFI	CTRYAG	2 cut(s)	24, 941
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	67, 598, 818, 1004
BstX2I	RGATCY	2 cut(s)	536, 925
BstYI	RGATCY	2 cut(s)	536, 925
BsuRI	GGCC	1 cut(s)	632
BtgI	CCRYGG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	3 cut(s)	85, 934, 950
Cac8I	GCNNGC	1 cut(s)	882
Cfr13I	GGNCC	2 cut(s)	544, 745
CviAII	CATG	4 cut(s)	35, 97, 325, 772
DdeI	CTNAG	2 cut(s)	720, 1043
DpnI	GATC	4 cut(s)	345, 538, 927, 977
DpnII	GATC	4 cut(s)	343, 536, 925, 975
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
Eco130I	CCWWGG	4 cut(s)	269, 454, 540, 748
Eco24I	GRGCYC	1 cut(s)	892
Eco47I	GGWCC	2 cut(s)	544, 745
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	198, 509
Eco91I	GGTNACC	1 cut(s)	962
EcoNI	CCTNNNNNAGG	1 cut(s)	814
EcoO109I	RGGNCCY	2 cut(s)	544, 745
EcoO65I	GGTNACC	1 cut(s)	962
EcoRII	CCWGG	1 cut(s)	884
EcoT14I	CCWWGG	4 cut(s)	269, 454, 540, 748
EcoT38I	GRGCYC	1 cut(s)	892
ErhI	CCWWGG	4 cut(s)	269, 454, 540, 748
FaeI	CATG	4 cut(s)	38, 100, 328, 775
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	4 cut(s)	34, 96, 324, 771
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	4 cut(s)	81, 612, 807, 993
FriOI	GRGCYC	1 cut(s)	892
Fsp4HI	GCNGC	4 cut(s)	81, 612, 807, 993
FspBI	CTAG	2 cut(s)	455, 881
GluI	GCNGC	4 cut(s)	81, 612, 807, 993
HaeIII	GGCC	1 cut(s)	632
HapII	CCGG	3 cut(s)	350, 534, 972
Hin1II	CATG	4 cut(s)	38, 100, 328, 775
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	164, 761
HpaII	CCGG	3 cut(s)	350, 534, 972
HphI	GGTGA	2 cut(s)	572, 974
Hpy166II	GTNNAC	4 cut(s)	449, 463, 478, 655
Hpy188III	TCNNGA	4 cut(s)	18, 133, 207, 499
Hpy8I	GTNNAC	4 cut(s)	449, 463, 478, 655
HpyAV	CCTTC	3 cut(s)	305, 323, 820
HpyCH4III	ACNGT	2 cut(s)	285, 659
HpyCH4V	TGCA	6 cut(s)	34, 369, 614, 727, 900, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	781, 803
HpyF3I	CTNAG	2 cut(s)	720, 1043
Hsp92II	CATG	4 cut(s)	38, 100, 328, 775
Kzo9I	GATC	4 cut(s)	343, 536, 925, 975
LmnI	GCTCC	3 cut(s)	209, 416, 1000
Lsp1109I	GCAGC	4 cut(s)	67, 598, 818, 1004
LweI	GCATC	1 cut(s)	917
MaeI	CTAG	2 cut(s)	455, 881
MaeIII	GTNAC	1 cut(s)	962
MalI	GATC	4 cut(s)	345, 538, 927, 977
MboI	GATC	4 cut(s)	343, 536, 925, 975
MboII	GAAGA	4 cut(s)	301, 742, 935, 1022
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	2 cut(s)	536, 925
MhlI	GDGCHC	3 cut(s)	199, 494, 892
MluCI	AATT	6 cut(s)	62, 183, 294, 420, 597, 901
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	40, 140, 194, 253, 431, 662, 882
MseI	TTAA	3 cut(s)	107, 917, 933
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	916
MspI	CCGG	3 cut(s)	350, 534, 972
MspR9I	CCNGG	2 cut(s)	886, 973
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	886
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	781, 803
NciI	CCSGG	1 cut(s)	973
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	4 cut(s)	343, 536, 925, 975
NheI	GCTAGC	1 cut(s)	880
NlaIII	CATG	4 cut(s)	38, 100, 328, 775
NlaIV	GGNNCC	2 cut(s)	211, 538
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	962
PaeR7I	CTCGAG	1 cut(s)	198
PaqCI	CACCTGC	1 cut(s)	950
PfeI	GAWTC	2 cut(s)	164, 761
PflFI	GACNNNGTC	1 cut(s)	548
PkrI	GCNGC	4 cut(s)	82, 613, 808, 994
PpuMI	RGGWCCY	2 cut(s)	544, 745
PsiI	TTATAA	1 cut(s)	950
Psp5II	RGGWCCY	2 cut(s)	544, 745
Psp6I	CCWGG	1 cut(s)	884
PspEI	GGTNACC	1 cut(s)	962
PspGI	CCWGG	1 cut(s)	884
PspN4I	GGNNCC	2 cut(s)	211, 538
PspPI	GGNCC	2 cut(s)	544, 745
PspPPI	RGGWCCY	2 cut(s)	544, 745
PspXI	VCTCGAGB	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	945
PsuI	RGATCY	2 cut(s)	536, 925
PsyI	GACNNNGTC	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	3 cut(s)	107, 917, 933
SatI	GCNGC	4 cut(s)	81, 612, 807, 993
Sau3AI	GATC	4 cut(s)	343, 536, 925, 975
Sau96I	GGNCC	2 cut(s)	544, 745
SbfI	CCTGCAGG	1 cut(s)	945
ScrFI	CCNGG	2 cut(s)	886, 973
SdaI	CCTGCAGG	1 cut(s)	945
SduI	GDGCHC	3 cut(s)	199, 494, 892
SfaNI	GCATC	1 cut(s)	917
SfcI	CTRYAG	2 cut(s)	24, 941
Sfr274I	CTCGAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	544, 745
SlaI	CTCGAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	4 cut(s)	44, 198, 814, 916
SmoI	CTYRAG	4 cut(s)	44, 198, 814, 916
Sse8387I	CCTGCAGG	1 cut(s)	945
Sse9I	AATT	6 cut(s)	62, 183, 294, 420, 597, 901
SsiI	CCGC	2 cut(s)	220, 906
SspI	AATATT	2 cut(s)	557, 983
SspMI	CTAG	2 cut(s)	455, 881
StyD4I	CCNGG	2 cut(s)	884, 971
StyI	CCWWGG	4 cut(s)	269, 454, 540, 748
TaaI	ACNGT	2 cut(s)	285, 659
TaqI	TCGA	1 cut(s)	199
TasI	AATT	6 cut(s)	62, 183, 294, 420, 597, 901
TfiI	GAWTC	2 cut(s)	164, 761
Tru1I	TTAA	3 cut(s)	107, 917, 933
Tru9I	TTAA	3 cut(s)	107, 917, 933
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	4 cut(s)	80, 611, 806, 992
Tsp45I	GTSAC	1 cut(s)	962
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	548
Vha464I	CTTAAG	1 cut(s)	916
VpaK11BI	GGWCC	2 cut(s)	544, 745
XagI	CCTNNNNNAGG	1 cut(s)	814
XapI	RAATTY	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	198
XmaJI	CCTAGG	1 cut(s)	454
XspI	CTAG	2 cut(s)	455, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.