Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019886.1

Orthogroup ID

OG0007856

Physical Location & Seq

Genomic Coordinates Reverse (-)

158 .. 2772

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgattgcaattccctatttgaccgcgttaaccacctacttcagctatggcttgctcttcgcttttgggcaagtcagagatttcttcagaaaattcatcgactggtggagctctaataatctccagggttatgctccaatctgtttaggacttgaagatttctacgtccgtcgtctctatcttcgaattcaggactttttcaataggcctattgcaagtgctcccgatgcttggtttgatgtggttgaacgttactccaatgactacaacaagacactcaaactaacctcaaacacaagccgatgccttaacttgggatcttataactaccttggctttgctgccgccgatgaatattgcacgcctcgtgccatccagacattgaagaaatattctcccagtacctgtagtagccgagttgatggcggcactacggctttgcacaatgaactggagaagtgtgttgcaaattttgttggaaaacctgctgctatagttttcggcatgggttatgtcaccaactctgctatccttcctgtactgattggaaagggaggtttgattgttagtgattctttgaatcataactccattgttaatggcgcacgaggatctggagcatccatttgtgtcttccaacacaacactccatcccatttggatgaggttttaagagaacaaatagcagagggacaacctagaacccgcaggccttggaaaaagattattgtcattgtggagggcatatacagcatggaaggggagctttgcaaacttcctgagattatagcaatctgcaagaaatataaggtctatacgtatttggatgaggcccacagtattggagctgtaggaaaatcaggacgaggtgtttgtgagctcttgggagtagatactgctgatgttgatatcatgatgggaacatttaccaaatccttcggatcatgtggtggctatattgcaggatccaaggacctcatccaatacctgaagtacacttgccctgctcatctttatgcaacttccatatcaccaccggctgcagaacaaataatatcatccattaaggtcttacttggagaggatggttctaacagaggtgttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0003674 GO:0003824 GO:0004758 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0016408 GO:0016409 GO:0016454 GO:0016740 GO:0016746 GO:0016747 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

369

Amino Acids

40.62

Weight (kDa)

7.92

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48780 AT3G48780 AT3G48790 AT3G48790 AT5G23670 AT5G23670
fragaria_vesca	FvH4_6g54160
malus_domestica	MD09G1004800.v1.1 MD17G1008800.v1.1
prunus_persica	Prupe.3G312000_v2.0.a1 Prupe.5G144700_v2.0.a1
pyrus_communis	pycom111g00350 pycom17g00370
rosa_chinensis	RchiOBHm_Chr2g0176331
rosa_laevigata	RLG00000022404
rosa_multiflora	Rmu_sc0019886.1_g000001 Rmu_sc0027060.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076560
rosa_rugosa	Rorug02G0593300
rosa_samantha	Rh2AG671800 Rh2BG683300 Rh2CG646000 Rh2DG696800
rosa_wichuraiana	Rw2G055090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	493
AccII	CGCG	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 345, 426, 706
AclI	AACGTT	1 cut(s)	250
AclWI	GGATC	5 cut(s)	325, 619, 949, 960, 973
AcsI	RAATTY	3 cut(s)	92, 186, 469
AcuI	CTGAAG	3 cut(s)	25, 70, 1010
AfaI	GTAC	3 cut(s)	403, 540, 995
AfiI	CCNNNNNNNGG	2 cut(s)	231, 313
AgsI	TTSAA	5 cut(s)	155, 202, 248, 385, 580
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	5 cut(s)	45, 111, 766, 848, 880
AluI	AGCT	5 cut(s)	45, 111, 766, 848, 880
Alw21I	GWGCWC	3 cut(s)	113, 223, 882
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	5 cut(s)	325, 619, 949, 960, 973
AlwNI	CAGNNNCTG	1 cut(s)	405
AoxI	GGCC	3 cut(s)	206, 710, 831
ApeKI	GCWGC	3 cut(s)	341, 488, 1040
ApoI	RAATTY	3 cut(s)	92, 186, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	855, 887
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	832, 973
AsuHPI	GGTGA	2 cut(s)	508, 1023
AsuII	TTCGAA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	973
BamHI	GGATCC	1 cut(s)	965
BanII	GRGCYC	2 cut(s)	113, 882
BauI	CACGAG	2 cut(s)	366, 606
BbsI	GAAGAC	1 cut(s)	625
Bbv12I	GWGCWC	3 cut(s)	113, 223, 882
BbvI	GCAGC	3 cut(s)	328, 475, 1027
BccI	CCATC	5 cut(s)	380, 416, 658, 910, 1079
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	4 cut(s)	406, 492, 849, 1041
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	5 cut(s)	342, 345, 427, 489, 1041
BlsI	GCNGC	5 cut(s)	343, 346, 428, 490, 1042
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	973
BmgT120I	GGNCC	2 cut(s)	832, 973
BmiI	GGNNCC	1 cut(s)	967
BmrFI	CCNGG	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	217, 293, 629
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	625
BpmI	CTGGAG	3 cut(s)	107, 473, 636
Bpu14I	TTCGAA	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	819
BsaJI	CCNNGG	4 cut(s)	124, 331, 713, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 313
Bse118I	RCCGGY	1 cut(s)	1036
Bse1I	ACTGG	3 cut(s)	107, 399, 456
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	4 cut(s)	124, 331, 713, 969
BseGI	GGATG	8 cut(s)	372, 620, 650, 667, 832, 978, 1058, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	231, 313
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	3 cut(s)	107, 399, 456
BseXI	GCAGC	3 cut(s)	328, 475, 1027
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	208, 712, 833
BsiHKAI	GWGCWC	3 cut(s)	113, 223, 882
BsiSI	CCGG	1 cut(s)	1037
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	2 cut(s)	231, 313
BsmAI	GTCTC	1 cut(s)	179
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	3 cut(s)	208, 712, 833
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	3 cut(s)	113, 223, 882
Bsp143I	GATC	4 cut(s)	317, 611, 941, 965
BspACI	CCGC	4 cut(s)	24, 345, 426, 706
BspANI	GGCC	3 cut(s)	208, 712, 833
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	1 cut(s)	967
BspMAI	CTGCAG	1 cut(s)	1045
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	5 cut(s)	325, 619, 949, 960, 973
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	1036
BsrI	ACTGG	3 cut(s)	107, 399, 456
BssAI	RCCGGY	1 cut(s)	1036
BssECI	CCNNGG	4 cut(s)	124, 331, 713, 969
BssMI	GATC	4 cut(s)	317, 611, 941, 965
BssSI	CACGAG	2 cut(s)	366, 606
BssT1I	CCWWGG	3 cut(s)	331, 713, 969
Bst2BI	CACGAG	2 cut(s)	366, 606
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	839
Bst6I	CTCTTC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	819
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	53, 362, 710
BstDEI	CTNAG	1 cut(s)	780
BstF5I	GGATG	8 cut(s)	372, 620, 650, 667, 832, 978, 1058, 1090
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	4 cut(s)	320, 614, 944, 968
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	4 cut(s)	317, 611, 941, 965
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 750
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	4 cut(s)	406, 492, 849, 1041
BstSNI	TACGTA	1 cut(s)	819
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	328, 475, 1027
BstV2I	GAAGAC	1 cut(s)	625
BstX2I	RGATCY	3 cut(s)	317, 611, 965
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	3 cut(s)	317, 611, 965
BsuRI	GGCC	3 cut(s)	208, 712, 833
BtsCI	GGATG	8 cut(s)	372, 620, 650, 667, 832, 978, 1058, 1090
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	3 cut(s)	53, 362, 710
CaiI	CAGNNNCTG	1 cut(s)	405
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	1 cut(s)	605
Cfr10I	RCCGGY	1 cut(s)	1036
Cfr13I	GGNCC	2 cut(s)	832, 973
Csp6I	GTAC	3 cut(s)	402, 539, 994
CviAII	CATG	4 cut(s)	505, 754, 913, 945
CviQI	GTAC	3 cut(s)	402, 539, 994
DdeI	CTNAG	1 cut(s)	780
DpnI	GATC	4 cut(s)	319, 613, 943, 967
DpnII	GATC	4 cut(s)	317, 611, 941, 965
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Ecl136II	GAGCTC	2 cut(s)	111, 880
Eco105I	TACGTA	1 cut(s)	819
Eco130I	CCWWGG	3 cut(s)	331, 713, 969
Eco147I	AGGCCT	2 cut(s)	208, 712
Eco24I	GRGCYC	2 cut(s)	113, 882
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	973
Eco53kI	GAGCTC	2 cut(s)	111, 880
Eco57I	CTGAAG	3 cut(s)	25, 70, 1010
EcoICRI	GAGCTC	2 cut(s)	111, 880
EcoO109I	RGGNCCY	1 cut(s)	973
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	3 cut(s)	331, 713, 969
EcoT38I	GRGCYC	2 cut(s)	113, 882
ErhI	CCWWGG	3 cut(s)	331, 713, 969
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	4 cut(s)	508, 757, 916, 948
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	4 cut(s)	504, 753, 912, 944
FauI	CCCGC	1 cut(s)	713
Fnu4HI	GCNGC	5 cut(s)	342, 345, 427, 489, 1041
FokI	GGATG	8 cut(s)	359, 607, 637, 674, 839, 965, 1045, 1097
FriOI	GRGCYC	2 cut(s)	113, 882
Fsp4HI	GCNGC	5 cut(s)	342, 345, 427, 489, 1041
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	5 cut(s)	342, 345, 427, 489, 1041
GsuI	CTGGAG	3 cut(s)	107, 473, 636
HaeIII	GGCC	3 cut(s)	208, 712, 833
HapII	CCGG	1 cut(s)	1037
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	4 cut(s)	508, 757, 916, 948
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	572, 580
HpaI	GTTAAC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	1037
HphI	GGTGA	2 cut(s)	508, 1023
Hpy166II	GTNNAC	2 cut(s)	30, 996
Hpy188I	TCNGA	3 cut(s)	77, 89, 941
Hpy188III	TCNNGA	7 cut(s)	191, 224, 376, 615, 779, 861, 913
Hpy8I	GTNNAC	2 cut(s)	30, 996
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	3 cut(s)	542, 752, 946
HpyCH4III	ACNGT	1 cut(s)	839
HpyCH4IV	ACGT	3 cut(s)	165, 250, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 750
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	3 cut(s)	165, 250, 818
Hsp92II	CATG	4 cut(s)	508, 757, 916, 948
HspAI	GCGC	1 cut(s)	603
KspAI	GTTAAC	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	317, 611, 941, 965
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	6 cut(s)	108, 139, 226, 617, 763, 845
Lsp1109I	GCAGC	3 cut(s)	328, 475, 1027
LweI	GCATC	3 cut(s)	217, 293, 629
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	3 cut(s)	165, 250, 818
MaeIII	GTNAC	2 cut(s)	251, 514
MalI	GATC	4 cut(s)	319, 613, 943, 967
MboI	GATC	4 cut(s)	317, 611, 941, 965
MboII	GAAGA	6 cut(s)	49, 76, 167, 173, 397, 625
MflI	RGATCY	3 cut(s)	317, 611, 965
MhlI	GDGCHC	3 cut(s)	113, 223, 882
MluCI	AATT	4 cut(s)	9, 92, 186, 469
MmeI	TCCRAC	2 cut(s)	457, 661
MseI	TTAA	5 cut(s)	29, 309, 597, 671, 1065
MslI	CAYNNNNRTG	2 cut(s)	660, 1014
MspI	CCGG	1 cut(s)	1037
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	227, 750
NdeII	GATC	4 cut(s)	317, 611, 941, 965
NlaIII	CATG	4 cut(s)	508, 757, 916, 948
NlaIV	GGNNCC	1 cut(s)	967
NmeAIII	GCCGAG	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	514
NspV	TTCGAA	1 cut(s)	184
PagI	TCATGA	1 cut(s)	912
PceI	AGGCCT	2 cut(s)	208, 712
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	572, 580
PkrI	GCNGC	5 cut(s)	343, 346, 428, 490, 1042
Ppu21I	YACGTR	1 cut(s)	819
PpuMI	RGGWCCY	1 cut(s)	973
PsiI	TTATAA	1 cut(s)	324
Psp124BI	GAGCTC	2 cut(s)	113, 882
Psp1406I	AACGTT	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	973
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	967
PspPI	GGNCC	2 cut(s)	832, 973
PspPPI	RGGWCCY	1 cut(s)	973
PstI	CTGCAG	1 cut(s)	1045
PstNI	CAGNNNCTG	1 cut(s)	405
PsuI	RGATCY	3 cut(s)	317, 611, 965
RsaI	GTAC	3 cut(s)	403, 540, 995
RsaNI	GTAC	3 cut(s)	402, 539, 994
RseI	CAYNNNNRTG	2 cut(s)	660, 1014
SacI	GAGCTC	2 cut(s)	113, 882
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	5 cut(s)	29, 309, 597, 671, 1065
SatI	GCNGC	5 cut(s)	342, 345, 427, 489, 1041
Sau3AI	GATC	4 cut(s)	317, 611, 941, 965
Sau96I	GGNCC	2 cut(s)	832, 973
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	3 cut(s)	113, 223, 882
SfaNI	GCATC	3 cut(s)	217, 293, 629
SfcI	CTRYAG	4 cut(s)	406, 492, 849, 1041
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	1 cut(s)	973
SmiMI	CAYNNNNRTG	2 cut(s)	660, 1014
SnaBI	TACGTA	1 cut(s)	819
Sse9I	AATT	4 cut(s)	9, 92, 186, 469
SseBI	AGGCCT	2 cut(s)	208, 712
SsiI	CCGC	4 cut(s)	24, 345, 426, 706
SspI	AATATT	2 cut(s)	356, 392
SspMI	CTAG	1 cut(s)	699
SstI	GAGCTC	2 cut(s)	113, 882
StuI	AGGCCT	2 cut(s)	208, 712
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	3 cut(s)	331, 713, 969
TaaI	ACNGT	1 cut(s)	839
TaiI	ACGT	3 cut(s)	168, 253, 821
TaqI	TCGA	2 cut(s)	99, 184
TasI	AATT	4 cut(s)	9, 92, 186, 469
TatI	WGTACW	2 cut(s)	538, 993
TauI	GCSGC	2 cut(s)	347, 429
TfiI	GAWTC	2 cut(s)	572, 580
Tru1I	TTAA	5 cut(s)	29, 309, 597, 671, 1065
Tru9I	TTAA	5 cut(s)	29, 309, 597, 671, 1065
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	341, 488, 1040
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	85, 366, 462
TspGWI	ACGGA	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	973
XapI	RAATTY	3 cut(s)	92, 186, 469
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.