Prupe.3G312000_v2.0.a1

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
27047294 .. 27051329
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G312000.1

Sequence Viewer

Length: 1470 bp
ATGATTGCGATCCCTTATTTAACCGCGTTAACTACGTACTTCAGCTATGGCTTGCTTTTCGTCTTCGGCCAAGTCAGAGATTTCTTCCGCAAATTCATCGACTGGTGGAGTTCTAGCAATTTGCAGGGTTATGCTCCAATCTGTTTAGGACTTGAAGATTTCTATATTCGCCGGCTGTATCTTCGTATTCAGGACTGTTTCAATAGACCTATAGCAAGTGCTCCTGATGCTTGGTTTGATGTGGTCGAGCGTTTCTCCAATGACTACAACAAGACACTCAAACTAACCACAAAAACCAGTAGATGCCTTAACTTGGGATCTTACAATTACCTTGGCTTTGCTGCATCCGATGAATACTGCACGCCTCGTGCTATCCAGACATTGAAAAAATATTCTCCCAGTACCTGTAGTAGCCGTGTTGACGGCGGCACCACAGTTTTGCATAATGAACTGGAGAAGTGTGTGGCAAGTTTTGTTGGGAAACCTGCTGCTATAGTTTTTGGAATGGGCTATGTCACAAACTCTGCTATCCTTCCAGTCTTGATGGGGAAGGGACGCTTGATTGTTAGTGATTCCTTGAACCACAACTCCATTGTCAATGGTGCACGAGGATCTGGAGCTAGTATTTGCGTTTTCCAACACAATACTCCTTCTCATTTGGAGGAAGTTTTGAGAGAACAAATCGCAGAGGGGCAACCCAGGACCCGCAGACCCTGGAAGAAGATAATTGTCATTGTGGAGGGAATATACAGCATGGAAGGGGAGCTTTGCAAACTTCCTGAGATTATAGCCATCTGCAAGAAATATAAGGCATATACATATTTGGATGAGGCCCACAGCATTGGAGCAGTAGGGAAAACCGGTAGAGGTGTTTGTGAGCTCTTGGGAGTAGATACAGCTGATGTAGATATCATGATGGGAACATTTACCAAATCATTTGGATCATCTGGGGGATATATAGCAGGATCCGAGGAGCTTATCCAATACTTGAAGTACACTTGCCCTGCTCATCTTTATGCAACTTCAATATCACCACCAGCTGCAGAACAAATAATATCTGCTATTAAGGTCATTCTTGGAGAGGATGGTTCCAATAGAGGTGCCCAAAAACTTGCACGAATACGTGAGAATAGCAACTTTTTCAGGTCAGAACTACAGAAAATGGGATTTGAGGTTTTGGGGGATAATGACTCTCCAGTAATGCCAATTATGCTTTACAACCCAGCCAAAATTCCTGCCTTCTCACGGGAGTGCCTCAAGCAGAATGTAGCTGTTGTGACAGTAGCATTTCCAGCAACCCCACTGCTATTGGCGAGGGCACGTATATGCATATCTGCTTCTCATACAAGGGAAGACCTGCTCAAAGCGTTGGAGGTATTTGGCAGGGTTGGGGATCTGGTGGGTATAAAATACTTCCCGGCAGAACCAAAGAAGCTGCAGGAAGAAGAAAGGTTGCTCAAGTTGGAGTGA

Protein Analysis

490

Amino Acids

54.25

Weight (kDa)

8.54

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 493, 1365
AccB1I GGYRCC 2 cut(s) 428, 1100
AccII CGCG 1 cut(s) 26
AciI CCGC 4 cut(s) 24, 88, 426, 706
AclWI GGATC 7 cut(s) 4, 325, 619, 949, 960, 973, 1401
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 92, 1230
AcuI CTGAAG 1 cut(s) 25
AfaI GTAC 3 cut(s) 38, 403, 995
AfiI CCNNNNNNNGG 2 cut(s) 313, 1245
AgeI ACCGGT 1 cut(s) 860
AgsI TTSAA 6 cut(s) 155, 202, 385, 580, 991, 1026
AjnI CCWGG 2 cut(s) 698, 713
AleI CACNNNNGTG 1 cut(s) 1249
AloI GAACNNNNNNTCC 2 cut(s) 572, 604
AluBI AGCT 9 cut(s) 45, 620, 766, 880, 899, 976, 1040, 1271, 1435
AluI AGCT 9 cut(s) 45, 620, 766, 880, 899, 976, 1040, 1271, 1435
Alw21I GWGCWC 3 cut(s) 223, 607, 882
Alw44I GTGCAC 1 cut(s) 603
AlwI GGATC 7 cut(s) 4, 325, 619, 949, 960, 973, 1401
AlwNI CAGNNNCTG 2 cut(s) 405, 714
AoxI GGCC 2 cut(s) 67, 831
ApaLI GTGCAC 1 cut(s) 603
ApeKI GCWGC 4 cut(s) 341, 488, 1040, 1435
ApoI RAATTY 2 cut(s) 92, 1230
AsiGI ACCGGT 1 cut(s) 860
AspS9I GGNCC 2 cut(s) 702, 832
AsuC2I CCSGG 1 cut(s) 1418
AsuHPI GGTGA 1 cut(s) 1023
AvaII GGWCC 1 cut(s) 702
BaeGI GKGCMC 3 cut(s) 607, 1105, 1321
BamHI GGATCC 1 cut(s) 965
BanI GGYRCC 2 cut(s) 428, 1100
BanII GRGCYC 1 cut(s) 882
BauI CACGAG 2 cut(s) 366, 606
BbsI GAAGAC 2 cut(s) 55, 1359
Bbv12I GWGCWC 3 cut(s) 223, 607, 882
BbvI GCAGC 4 cut(s) 328, 475, 1027, 1422
BccI CCATC 4 cut(s) 538, 800, 910, 1079
BceAI ACGGC 2 cut(s) 399, 439
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 2 cut(s) 700, 715
BcnI CCSGG 1 cut(s) 1418
BfaI CTAG 2 cut(s) 114, 621
BfmI CTRYAG 6 cut(s) 210, 406, 492, 1041, 1154, 1436
BfuAI ACCTGC 2 cut(s) 493, 1365
BisI GCNGC 5 cut(s) 342, 427, 489, 1041, 1436
BlsI GCNGC 5 cut(s) 343, 428, 490, 1042, 1437
Bme1390I CCNGG 3 cut(s) 700, 715, 1418
Bme18I GGWCC 1 cut(s) 702
BmgT120I GGNCC 2 cut(s) 702, 832
BmiI GGNNCC 5 cut(s) 430, 704, 967, 1090, 1102
BmrFI CCNGG 3 cut(s) 700, 715, 1418
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 217, 293, 353
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 2 cut(s) 55, 1359
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 3 cut(s) 473, 636, 1179
BpuEI CTTGAG 2 cut(s) 1241, 1442
BpuMI CCSGG 1 cut(s) 1418
BsaAI YACGTR 3 cut(s) 36, 1124, 1322
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 331, 698, 713, 969
BsaWI WCCGGW 1 cut(s) 860
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 1245
Bse118I RCCGGY 2 cut(s) 171, 860
Bse1I ACTGG 6 cut(s) 107, 297, 399, 456, 536, 1196
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 700, 715
BseDI CCNNGG 4 cut(s) 331, 698, 713, 969
BseGI GGATG 3 cut(s) 344, 832, 1090
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 313, 1245
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 6 cut(s) 107, 297, 399, 456, 536, 1196
BseRI GAGGAG 1 cut(s) 986
BseSI GKGCMC 3 cut(s) 607, 1105, 1321
BseXI GCAGC 4 cut(s) 328, 475, 1027, 1422
BseYI CCCAGC 1 cut(s) 1222
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 69, 833
BshNI GGYRCC 2 cut(s) 428, 1100
BshTI ACCGGT 1 cut(s) 860
BsiHKAI GWGCWC 3 cut(s) 223, 607, 882
BsiSI CCGG 3 cut(s) 172, 861, 1418
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 2 cut(s) 313, 1245
BsmFI GGGAC 1 cut(s) 567
BsnI GGCC 2 cut(s) 69, 833
Bsp1286I GDGCHC 5 cut(s) 223, 607, 882, 1105, 1321
Bsp143I GATC 6 cut(s) 9, 317, 611, 941, 965, 1393
BspACI CCGC 4 cut(s) 24, 88, 426, 706
BspANI GGCC 2 cut(s) 69, 833
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 5 cut(s) 430, 704, 967, 1090, 1102
BspMAI CTGCAG 2 cut(s) 1045, 1440
BspMI ACCTGC 2 cut(s) 493, 1365
BspPI GGATC 7 cut(s) 4, 325, 619, 949, 960, 973, 1401
BspT107I GGYRCC 2 cut(s) 428, 1100
BsrFI RCCGGY 2 cut(s) 171, 860
BsrI ACTGG 6 cut(s) 107, 297, 399, 456, 536, 1196
BssAI RCCGGY 2 cut(s) 171, 860
BssECI CCNNGG 4 cut(s) 331, 698, 713, 969
BssMI GATC 6 cut(s) 9, 317, 611, 941, 965, 1393
BssSI CACGAG 2 cut(s) 366, 606
BssT1I CCWWGG 1 cut(s) 331
Bst2BI CACGAG 2 cut(s) 366, 606
Bst2UI CCWGG 2 cut(s) 700, 715
Bst4CI ACNGT 3 cut(s) 197, 436, 1282
BstBAI YACGTR 3 cut(s) 36, 1124, 1322
BstC8I GCNNGC 3 cut(s) 53, 173, 362
BstDEI CTNAG 1 cut(s) 780
BstF5I GGATG 3 cut(s) 344, 832, 1090
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 6 cut(s) 12, 320, 614, 944, 968, 1396
BstMBI GATC 6 cut(s) 9, 317, 611, 941, 965, 1393
BstMWI GCNNNNNNNGC 3 cut(s) 227, 1210, 1292
BstNI CCWGG 2 cut(s) 700, 715
BstSCI CCNGG 3 cut(s) 698, 713, 1416
BstSFI CTRYAG 6 cut(s) 210, 406, 492, 1041, 1154, 1436
BstSLI GKGCMC 3 cut(s) 607, 1105, 1321
BstSNI TACGTA 1 cut(s) 36
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 4 cut(s) 328, 475, 1027, 1422
BstV2I GAAGAC 2 cut(s) 55, 1359
BstX2I RGATCY 4 cut(s) 317, 611, 965, 1393
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 4 cut(s) 317, 611, 965, 1393
BsuRI GGCC 2 cut(s) 69, 833
BtsCI GGATG 3 cut(s) 344, 832, 1090
BtsI GCAGTG 1 cut(s) 1301
BtsIMutI CAGTG 1 cut(s) 1301
BveI ACCTGC 2 cut(s) 493, 1365
Cac8I GCNNGC 3 cut(s) 53, 173, 362
CaiI CAGNNNCTG 2 cut(s) 405, 714
CciI TCATGA 1 cut(s) 912
Cfr10I RCCGGY 2 cut(s) 171, 860
Cfr13I GGNCC 2 cut(s) 702, 832
CseI GACGC 1 cut(s) 564
Csp6I GTAC 3 cut(s) 37, 402, 994
CspAI ACCGGT 1 cut(s) 860
CspCI CAANNNNNGTGG 2 cut(s) 1290, 1325
CviAII CATG 2 cut(s) 754, 913
CviQI GTAC 3 cut(s) 37, 402, 994
DdeI CTNAG 1 cut(s) 780
DpnI GATC 6 cut(s) 11, 319, 613, 943, 967, 1395
DpnII GATC 6 cut(s) 9, 317, 611, 941, 965, 1393
EaeI YGGCCR 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 880
Eco105I TACGTA 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 882
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 1 cut(s) 702
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 880
EcoO109I RGGNCCY 1 cut(s) 702
EcoRII CCWGG 2 cut(s) 698, 713
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 1331
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 2 cut(s) 757, 916
FalI AAGNNNNNCTT 4 cut(s) 542, 574, 750, 782
FaqI GGGAC 1 cut(s) 567
FatI CATG 2 cut(s) 753, 912
FauI CCCGC 1 cut(s) 713
Fnu4HI GCNGC 5 cut(s) 342, 427, 489, 1041, 1436
FokI GGATG 3 cut(s) 331, 839, 1097
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 5 cut(s) 342, 427, 489, 1041, 1436
FspBI CTAG 2 cut(s) 114, 621
GluI GCNGC 5 cut(s) 342, 427, 489, 1041, 1436
GsaI CCCAGC 1 cut(s) 1226
GsuI CTGGAG 3 cut(s) 473, 636, 1179
HaeIII GGCC 2 cut(s) 69, 833
HapII CCGG 3 cut(s) 172, 861, 1418
HgaI GACGC 1 cut(s) 564
Hin1II CATG 2 cut(s) 757, 916
HincII GTYRAC 2 cut(s) 30, 421
HindII GTYRAC 2 cut(s) 30, 421
HinfI GANTC 2 cut(s) 572, 1190
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 3 cut(s) 172, 861, 1418
HphI GGTGA 1 cut(s) 1023
Hpy166II GTNNAC 4 cut(s) 30, 421, 605, 996
Hpy188I TCNGA 4 cut(s) 77, 349, 970, 1150
Hpy188III TCNNGA 7 cut(s) 191, 224, 376, 541, 615, 779, 913
Hpy8I GTNNAC 4 cut(s) 30, 421, 605, 996
HpyAV CCTTC 5 cut(s) 542, 544, 660, 752, 1249
HpyCH4III ACNGT 3 cut(s) 197, 436, 1282
HpyCH4IV ACGT 3 cut(s) 35, 1123, 1321
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 1210, 1292
HpyF3I CTNAG 1 cut(s) 780
HpySE526I ACGT 3 cut(s) 35, 1123, 1321
Hsp92II CATG 2 cut(s) 757, 916
KroI GCCGGC 1 cut(s) 171
KroNI GCCGGC 1 cut(s) 173
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 6 cut(s) 9, 317, 611, 941, 965, 1393
LmnI GCTCC 6 cut(s) 139, 226, 617, 763, 845, 973
Lsp1109I GCAGC 4 cut(s) 328, 475, 1027, 1422
LweI GCATC 3 cut(s) 217, 293, 353
MaeI CTAG 2 cut(s) 114, 621
MaeII ACGT 3 cut(s) 35, 1123, 1321
MaeIII GTNAC 2 cut(s) 514, 1276
MalI GATC 6 cut(s) 11, 319, 613, 943, 967, 1395
MboI GATC 6 cut(s) 9, 317, 611, 941, 965, 1393
MboII GAAGA 9 cut(s) 55, 76, 167, 173, 730, 733, 1364, 1454, 1457
MflI RGATCY 4 cut(s) 317, 611, 965, 1393
MhlI GDGCHC 5 cut(s) 223, 607, 882, 1105, 1321
MluCI AATT 6 cut(s) 92, 118, 325, 726, 1206, 1230
MlyI GAGTC 1 cut(s) 1184
MmeI TCCRAC 3 cut(s) 661, 1350, 1443
Mph1103I ATGCAT 1 cut(s) 1331
MroNI GCCGGC 1 cut(s) 171
MseI TTAA 4 cut(s) 20, 29, 309, 1065
MslI CAYNNNNRTG 3 cut(s) 1014, 1249, 1324
MspA1I CMGCKG 2 cut(s) 899, 1040
MspI CCGG 3 cut(s) 172, 861, 1418
MspR9I CCNGG 3 cut(s) 700, 715, 1418
MvaI CCWGG 2 cut(s) 700, 715
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 227, 1210, 1292
NaeI GCCGGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 1418
NdeII GATC 6 cut(s) 9, 317, 611, 941, 965, 1393
NgoMIV GCCGGC 1 cut(s) 171
NlaIII CATG 2 cut(s) 757, 916
NlaIV GGNNCC 5 cut(s) 430, 704, 967, 1090, 1102
NmuCI GTSAC 2 cut(s) 514, 1276
NsiI ATGCAT 1 cut(s) 1331
OliI CACNNNNGTG 1 cut(s) 1249
PagI TCATGA 1 cut(s) 912
PdiI GCCGGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 572
PinAI ACCGGT 1 cut(s) 860
PkrI GCNGC 5 cut(s) 343, 428, 490, 1042, 1437
PleI GAGTC 1 cut(s) 1184
PpsI GAGTC 1 cut(s) 1184
Ppu21I YACGTR 3 cut(s) 36, 1124, 1322
PpuMI RGGWCCY 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 882
Psp5II RGGWCCY 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 698, 713
PspFI CCCAGC 1 cut(s) 1222
PspGI CCWGG 2 cut(s) 698, 713
PspN4I GGNNCC 5 cut(s) 430, 704, 967, 1090, 1102
PspPI GGNCC 2 cut(s) 702, 832
PspPPI RGGWCCY 1 cut(s) 702
PstI CTGCAG 2 cut(s) 1045, 1440
PstNI CAGNNNCTG 2 cut(s) 405, 714
PsuI RGATCY 4 cut(s) 317, 611, 965, 1393
PvuII CAGCTG 2 cut(s) 899, 1040
RsaI GTAC 3 cut(s) 38, 403, 995
RsaNI GTAC 3 cut(s) 37, 402, 994
RseI CAYNNNNRTG 3 cut(s) 1014, 1249, 1324
SacI GAGCTC 1 cut(s) 882
SaqAI TTAA 4 cut(s) 20, 29, 309, 1065
SatI GCNGC 5 cut(s) 342, 427, 489, 1041, 1436
Sau3AI GATC 6 cut(s) 9, 317, 611, 941, 965, 1393
Sau96I GGNCC 2 cut(s) 702, 832
SchI GAGTC 1 cut(s) 1184
ScrFI CCNGG 3 cut(s) 700, 715, 1418
SduI GDGCHC 5 cut(s) 223, 607, 882, 1105, 1321
SfaNI GCATC 3 cut(s) 217, 293, 353
SfcI CTRYAG 6 cut(s) 210, 406, 492, 1041, 1154, 1436
SinI GGWCC 1 cut(s) 702
SmiMI CAYNNNNRTG 3 cut(s) 1014, 1249, 1324
SmlI CTYRAG 2 cut(s) 1256, 1457
SmoI CTYRAG 2 cut(s) 1256, 1457
SnaBI TACGTA 1 cut(s) 36
Sse9I AATT 6 cut(s) 92, 118, 325, 726, 1206, 1230
SsiI CCGC 4 cut(s) 24, 88, 426, 706
SspI AATATT 1 cut(s) 392
SspMI CTAG 2 cut(s) 114, 621
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 3 cut(s) 698, 713, 1416
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 3 cut(s) 197, 436, 1282
TaiI ACGT 3 cut(s) 38, 1126, 1324
TaqI TCGA 2 cut(s) 99, 246
TasI AATT 6 cut(s) 92, 118, 325, 726, 1206, 1230
TatI WGTACW 1 cut(s) 993
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 4 cut(s) 20, 29, 309, 1065
Tru9I TTAA 4 cut(s) 20, 29, 309, 1065
TscAI CASTG 1 cut(s) 1308
TseFI GTSAC 2 cut(s) 514, 1276
TseI GCWGC 4 cut(s) 341, 488, 1040, 1435
Tsp45I GTSAC 2 cut(s) 514, 1276
TspDTI ATGAA 3 cut(s) 85, 366, 462
TspRI CASTG 1 cut(s) 1308
VneI GTGCAC 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 702
XapI RAATTY 2 cut(s) 92, 1230
XspI CTAG 2 cut(s) 114, 621
Zsp2I ATGCAT 1 cut(s) 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.