Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005360

Physical Location & Seq

Genomic Coordinates Reverse (-)

18185109 .. 18186968

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49055.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGATGTTAAAGATACCGGAATCAACCGCTCGGATACTCCTATCTCCGATCAAGACCATGACTTTCGACAATGGAATCACTCTTCGTTAGACTCTAACTTTCTCAGTCTCCGAAGCCAGATATTCGAAGCGAGTTATCGGAGAACTGATTTGATAAGAGTGAACCATGAGTTGTTCCACGAGAGAGATGCACTTAGGCGAAGAAATAGTGAGCTTGAAGCTGGAATTTTGGAAGAGGTTATGATTAGAGAGGAAATGAAGAGAGATCTGGAAGTTTCTAAAGAAACTGTCAGTGAATTGGAAGGAGAGGCGAAGGAGAAAACCAAATTACTATCGGATATTGCGGATTATGTACGATCTATGGAAGATCGCTTGTCGAAATTAATCCGATGTTTAAACGAAGAGAATGTTCCAGAAGAGGAAAGAGGGAGAAAACTGGAAACAAAGGAATATAATTCCAAATCTATTTTGGAGTTAGTCAAGGAGGTTGTAACGAAGTTAGAGACGTTCCAGGAATCTACGAAGAAGAAGAAGATGGAGCTAAGTAGAAGTGTGGAGTTCTTGGAAGAGGAGAATAGAGATATCAATGTCTTGTTAAGAGCTGCTTTGTTTGAGAAACAAACTGCAGAGAAGCAATTGAAAGAGATGAATGATCAGAAGGGATTGGCTTTGCTGCAAATCGCAGGAAGAGGGTTGCAGAGAATAGGTTTTGGTTTTGGGTTAGGAGAATCAGTAGAGGAGAGCTCAGAGACGGGAAATATCGCGAATGAAGAAGAAGAGAATGGTGTGGTTATAGCAATAGAGAAAACAATGAAGAAACTGCGGCAAGAGGTTTCTCAGCTGAAAATATCTTTGGAGGAATCAAGGTTAGAAGAAGTGGGGTTGAGGAAAGTTACAGAGGAACAAGCTCAGAAATTAGCAGAGAACACGGTGTATATCAACAAGCTGCAAAATCAAGAGAAGTTTCTTGCTCAAAACGTCGAAGAGCTAGTGAAAGCAATAAGAGAAGCAGAATCAGAAGTAAGTAGATGGAGAGAAGCTTGTGAGCTAGAAGTTGAAGCAGGGCAGCGCGAAGTCGAAGTACGGGATCAGCTCATAGCGGTTCTAAAGTCAGAGGTTGAGAAGCTGAGATCAGCATTAGCCAGATCAGAAGGGAAACTAAAACTGAAAGAAGAATTGGCCAAAGCTGCAATGGTAGCAGAAGAAGCAGCTGAGAAATCGCTGCGATTGGCCGAGAGAAGAATAGCTCAACTTCTTAGCCGTATTGAACATCTCTACCGCCAATTGGAAGAAGCAGAGTCTACAGAACGCAGACGTGGAAAGTTCAGGTATGTTTGGTGTTGGCCGATGTGGCGTTTTCCTACCGCTGCTTCTACTGCTGCGACCGCTACTGGAAGTTCTTCATATACAAGCAACAGAGCATTGTTACGATATGATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

480

Amino Acids

55.49

Weight (kDa)

5.33

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49055
fragaria_vesca	FvH4_7g29830 FvH4_7g29830 FvH4_7g29830 FvH4_7g29830 FvH4_7g29830
malus_domestica	MD01G1204900.v1.1 MD07G1273400.v1.1
prunus_persica	Prupe.2G297300_v2.0.a1
pyrus_communis	pycom01g21450 pycom07g25000
rosa_chinensis	RchiOBHm_Chr1g0377801
rosa_laevigata	RLG00000026497
rosa_multiflora	Rmu_co8376285.1_g000001 Rmu_sc0004824.1_g000002 Rmu_sc0036419.1_g000001 Rmu_sc0040831.1_g000001 Rmu_sc0041379.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029020 Rroxscaffold_4G00281050
rosa_rugosa	Rorug01G0405200
rosa_samantha	Rh1AG427200 Rh1BG382100 Rh1CG396000 Rh1DG413100 Rh5BG351000 Rh5CG377200 Rh5DG364900
rosa_wichuraiana	Rw1G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	1301
AccII	CGCG	2 cut(s)	764, 1071
AciI	CCGC	7 cut(s)	28, 344, 823, 1100, 1279, 1365, 1386
AclWI	GGATC	1 cut(s)	1095
AcoI	YGGCCR	3 cut(s)	1179, 1230, 1343
AcsI	RAATTY	1 cut(s)	225
AfaI	GTAC	2 cut(s)	354, 1083
AfiI	CCNNNNNNNGG	1 cut(s)	1285
AgsI	TTSAA	4 cut(s)	218, 640, 1058, 1268
AjiI	CACGTC	1 cut(s)	1316
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	4 cut(s)	836, 868, 1160, 1192
Alw21I	GWGCWC	1 cut(s)	746
Alw26I	GTCTC	3 cut(s)	113, 497, 743
AlwI	GGATC	1 cut(s)	1095
AoxI	GGCC	3 cut(s)	1179, 1230, 1343
ApeKI	GCWGC	9 cut(s)	602, 673, 946, 1066, 1187, 1208, 1222, 1367, 1379
ApoI	RAATTY	1 cut(s)	225
AseI	ATTAAT	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	1399
AspLEI	GCGC	1 cut(s)	1071
AsuII	TTCGAA	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	1181
BanII	GRGCYC	1 cut(s)	746
BarI	GAAGNNNNNNTAC	2 cut(s)	1065, 1097
BauI	CACGAG	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	746
BbvI	GCAGC	9 cut(s)	589, 660, 933, 1078, 1174, 1209, 1220, 1354, 1366
BccI	CCATC	2 cut(s)	529, 1023
BceAI	ACGGC	1 cut(s)	1245
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	3 cut(s)	113, 497, 743
BfaI	CTAG	2 cut(s)	989, 1049
BfmI	CTRYAG	2 cut(s)	624, 1302
BfuI	GTATCC	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	1351
BglII	AGATCT	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	512
BmgBI	CACGTC	1 cut(s)	1316
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	178, 1426
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
Bpu14I	TTCGAA	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	1285
Bse1I	ACTGG	2 cut(s)	441, 1396
Bse3DI	GCAATG	1 cut(s)	1197
BseBI	CCWGG	1 cut(s)	512
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	1285
BseMI	GCAATG	1 cut(s)	1197
BseMII	CTCAG	6 cut(s)	118, 759, 851, 923, 1118, 1203
BseNI	ACTGG	2 cut(s)	441, 1396
BseRI	GAGGAG	2 cut(s)	584, 752
BseXI	GCAGC	9 cut(s)	589, 660, 933, 1078, 1174, 1209, 1220, 1354, 1366
Bsh1236I	CGCG	2 cut(s)	764, 1071
Bsh1285I	CGRYCG	1 cut(s)	1386
BshFI	GGCC	3 cut(s)	1181, 1232, 1345
BsiEI	CGRYCG	1 cut(s)	1386
BsiHKAI	GWGCWC	1 cut(s)	746
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	1285
BsmAI	GTCTC	3 cut(s)	113, 497, 743
BsmBI	CGTCTC	2 cut(s)	497, 743
BsnI	GGCC	3 cut(s)	1181, 1232, 1345
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp143I	GATC	8 cut(s)	49, 265, 356, 367, 652, 1087, 1130, 1145
Bsp68I	TCGCGA	1 cut(s)	764
BspACI	CCGC	7 cut(s)	28, 344, 823, 1100, 1279, 1365, 1386
BspANI	GGCC	3 cut(s)	1181, 1232, 1345
BspCNI	CTCAG	6 cut(s)	117, 758, 850, 922, 1119, 1204
BspFNI	CGCG	2 cut(s)	764, 1071
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	1 cut(s)	1095
BspQI	GCTCTTC	1 cut(s)	978
BspT104I	TTCGAA	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	1197
BsrI	ACTGG	2 cut(s)	441, 1396
BssMI	GATC	8 cut(s)	49, 265, 356, 367, 652, 1087, 1130, 1145
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	289, 931
Bst6I	CTCTTC	9 cut(s)	88, 228, 254, 396, 411, 561, 682, 771, 978
BstBI	TTCGAA	1 cut(s)	126
BstDEI	CTNAG	9 cut(s)	104, 194, 542, 745, 837, 909, 1127, 1212, 1256
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	764, 1071
BstHHI	GCGC	1 cut(s)	1071
BstKTI	GATC	8 cut(s)	52, 268, 359, 370, 655, 1090, 1133, 1148
BstMAI	GTCTC	3 cut(s)	113, 497, 743
BstMBI	GATC	8 cut(s)	49, 265, 356, 367, 652, 1087, 1130, 1145
BstMCI	CGRYCG	1 cut(s)	1386
BstMWI	GCNNNNNNNGC	6 cut(s)	1187, 1196, 1205, 1351, 1376, 1385
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	2 cut(s)	624, 1302
BstUI	CGCG	2 cut(s)	764, 1071
BstV1I	GCAGC	9 cut(s)	589, 660, 933, 1078, 1174, 1209, 1220, 1354, 1366
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	1181, 1232, 1345
BtrI	CACGTC	1 cut(s)	1316
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	298
BtuMI	TCGCGA	1 cut(s)	764
CfoI	GCGC	1 cut(s)	1071
Csp6I	GTAC	2 cut(s)	353, 1082
CviAII	CATG	2 cut(s)	59, 167
CviQI	GTAC	2 cut(s)	353, 1082
DdeI	CTNAG	9 cut(s)	104, 194, 542, 745, 837, 909, 1127, 1212, 1256
DpnI	GATC	8 cut(s)	51, 267, 358, 369, 654, 1089, 1132, 1147
DpnII	GATC	8 cut(s)	49, 265, 356, 367, 652, 1087, 1130, 1145
DraI	TTTAAA	1 cut(s)	396
EaeI	YGGCCR	3 cut(s)	1179, 1230, 1343
Eam1104I	CTCTTC	9 cut(s)	88, 228, 254, 396, 411, 561, 682, 771, 978
EarI	CTCTTC	9 cut(s)	88, 228, 254, 396, 411, 561, 682, 771, 978
Ecl136II	GAGCTC	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	746
Eco32I	GATATC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	744
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	746
Esp3I	CGTCTC	2 cut(s)	497, 743
FaeI	CATG	2 cut(s)	62, 170
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FatI	CATG	2 cut(s)	58, 166
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	1301
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	746
FspBI	CTAG	2 cut(s)	989, 1049
GlaI	GCGC	1 cut(s)	1070
HaeIII	GGCC	3 cut(s)	1181, 1232, 1345
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	1071
Hin1II	CATG	2 cut(s)	62, 170
Hin6I	GCGC	1 cut(s)	1069
HinP1I	GCGC	1 cut(s)	1069
HindIII	AAGCTT	1 cut(s)	1038
HinfI	GANTC	8 cut(s)	21, 76, 92, 515, 728, 860, 1013, 1298
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	2 cut(s)	163, 1302
Hpy188III	TCNNGA	5 cut(s)	53, 269, 413, 763, 956
Hpy8I	GTNNAC	2 cut(s)	163, 1302
Hpy99I	CGWCG	1 cut(s)	983
HpyAV	CCTTC	4 cut(s)	296, 307, 652, 1145
HpyCH4III	ACNGT	2 cut(s)	289, 931
HpyCH4IV	ACGT	3 cut(s)	506, 978, 1315
HpyCH4V	TGCA	6 cut(s)	191, 626, 676, 697, 949, 1190
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1187, 1196, 1205, 1351, 1376, 1385
HpyF3I	CTNAG	9 cut(s)	104, 194, 542, 745, 837, 909, 1127, 1212, 1256
HpySE526I	ACGT	3 cut(s)	506, 978, 1315
Hsp92II	CATG	2 cut(s)	62, 170
HspAI	GCGC	1 cut(s)	1069
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	8 cut(s)	49, 265, 356, 367, 652, 1087, 1130, 1145
LguI	GCTCTTC	1 cut(s)	978
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	9 cut(s)	589, 660, 933, 1078, 1174, 1209, 1220, 1354, 1366
LweI	GCATC	2 cut(s)	178, 1426
MaeI	CTAG	2 cut(s)	989, 1049
MaeII	ACGT	3 cut(s)	506, 978, 1315
MaeIII	GTNAC	3 cut(s)	490, 892, 1425
MalI	GATC	8 cut(s)	51, 267, 358, 369, 654, 1089, 1132, 1147
MbiI	CCGCTC	1 cut(s)	30
MboI	GATC	8 cut(s)	49, 265, 356, 367, 652, 1087, 1130, 1145
MfeI	CAATTG	2 cut(s)	635, 1283
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	746
MlsI	TGGCCA	1 cut(s)	1181
MluCI	AATT	9 cut(s)	225, 296, 326, 380, 454, 635, 914, 1175, 1283
MluNI	TGGCCA	1 cut(s)	1181
MlyI	GAGTC	2 cut(s)	86, 1307
Mox20I	TGGCCA	1 cut(s)	1181
MroXI	GAANNNNTTC	1 cut(s)	1399
MscI	TGGCCA	1 cut(s)	1181
MseI	TTAA	4 cut(s)	9, 383, 395, 596
Msp20I	TGGCCA	1 cut(s)	1181
MspA1I	CMGCKG	3 cut(s)	841, 1211, 1367
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	512
MssI	GTTTAAAC	1 cut(s)	396
MunI	CAATTG	2 cut(s)	635, 1283
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	2 cut(s)	764, 1071
MwoI	GCNNNNNNNGC	6 cut(s)	1187, 1196, 1205, 1351, 1376, 1385
NdeII	GATC	8 cut(s)	49, 265, 356, 367, 652, 1087, 1130, 1145
NlaIII	CATG	2 cut(s)	62, 170
NmeAIII	GCCGAG	1 cut(s)	1258
NruI	TCGCGA	1 cut(s)	764
NspV	TTCGAA	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	978
PdmI	GAANNNNTTC	1 cut(s)	1399
PfeI	GAWTC	6 cut(s)	21, 76, 515, 728, 860, 1013
PfoI	TCCNGGA	1 cut(s)	510
PleI	GAGTC	2 cut(s)	86, 1306
PmeI	GTTTAAAC	1 cut(s)	396
PpsI	GAGTC	2 cut(s)	86, 1306
PshBI	ATTAAT	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	2 cut(s)	841, 1211
RruI	TCGCGA	1 cut(s)	764
RsaI	GTAC	2 cut(s)	354, 1083
RsaNI	GTAC	2 cut(s)	353, 1082
SacI	GAGCTC	1 cut(s)	746
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	4 cut(s)	9, 383, 395, 596
Sau3AI	GATC	8 cut(s)	49, 265, 356, 367, 652, 1087, 1130, 1145
SchI	GAGTC	2 cut(s)	86, 1307
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	746
SfaNI	GCATC	2 cut(s)	178, 1426
SfcI	CTRYAG	2 cut(s)	624, 1302
SfuI	TTCGAA	1 cut(s)	126
Sse9I	AATT	9 cut(s)	225, 296, 326, 380, 454, 635, 914, 1175, 1283
SsiI	CCGC	7 cut(s)	28, 344, 823, 1100, 1279, 1365, 1386
SspMI	CTAG	2 cut(s)	989, 1049
SstI	GAGCTC	1 cut(s)	746
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	289, 931
TaiI	ACGT	3 cut(s)	509, 981, 1318
TaqI	TCGA	5 cut(s)	67, 126, 377, 981, 1077
TasI	AATT	9 cut(s)	225, 296, 326, 380, 454, 635, 914, 1175, 1283
TauI	GCSGC	1 cut(s)	826
TfiI	GAWTC	6 cut(s)	21, 76, 515, 728, 860, 1013
Tru1I	TTAA	4 cut(s)	9, 383, 395, 596
Tru9I	TTAA	4 cut(s)	9, 383, 395, 596
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	9 cut(s)	602, 673, 946, 1066, 1187, 1208, 1222, 1367, 1379
TspDTI	ATGAA	5 cut(s)	272, 662, 783, 827, 1392
TspRI	CASTG	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	383
XapI	RAATTY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	2 cut(s)	466, 1189
XmiI	GTMKAC	1 cut(s)	1301
XmnI	GAANNNNTTC	1 cut(s)	1399
XspI	CTAG	2 cut(s)	989, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.