Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8376285.1

Orthogroup ID

OG0005360

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1020

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8376285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

atgaagaacctgcgcctggaaatcactcaattgagaagatctttggacgactctaggtcagacactgagcgcctacagagtctcacagagaaacaagctcaacaaattgcagaaaacatgctgtacatcaaggagttagaagacagagagagggtgttaactgaaaatgttgaggcacagatgattgaaatgaaggatgctgaagctgaggttgccagatggagagaagcttgtgagttggaagttgaagctgggaaaaatgagattgaagaacgcgaaaaattgattgccattctgaagcaagaattggagaaaacaagggctgctttggacatatcaaatggcaaattaaagctgaaagaagaacttgcagctaatgccatggctgctcatgcagcagcagagaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.65

Weight (kDa)

4.92

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49055
fragaria_vesca	FvH4_7g29830 FvH4_7g29830 FvH4_7g29830 FvH4_7g29830 FvH4_7g29830
malus_domestica	MD01G1204900.v1.1 MD07G1273400.v1.1
prunus_persica	Prupe.2G297300_v2.0.a1
pyrus_communis	pycom01g21450 pycom07g25000
rosa_chinensis	RchiOBHm_Chr1g0377801
rosa_laevigata	RLG00000026497
rosa_multiflora	Rmu_co8376285.1_g000001 Rmu_sc0004824.1_g000002 Rmu_sc0036419.1_g000001 Rmu_sc0040831.1_g000001 Rmu_sc0041379.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029020 Rroxscaffold_4G00281050
rosa_rugosa	Rorug01G0405200
rosa_samantha	Rh1AG427200 Rh1BG382100 Rh1CG396000 Rh1DG413100 Rh5BG351000 Rh5CG377200 Rh5DG364900
rosa_wichuraiana	Rw1G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccII	CGCG	1 cut(s)	276
AcuI	CTGAAG	2 cut(s)	222, 317
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	188, 248, 269
AhdI	GACNNNNNGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	6 cut(s)	98, 206, 230, 251, 355, 374
AluI	AGCT	6 cut(s)	98, 206, 230, 251, 355, 374
Alw26I	GTCTC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	65
ApeKI	GCWGC	5 cut(s)	323, 371, 386, 395, 398
AspLEI	GCGC	2 cut(s)	15, 72
BbsI	GAAGAC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	310, 373, 383
BccI	CCATC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	5 cut(s)	324, 372, 387, 396, 399
BlsI	GCNGC	5 cut(s)	325, 373, 388, 397, 400
Bme1390I	CCNGG	1 cut(s)	17
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	57, 198
BseXI	GCAGC	3 cut(s)	310, 373, 383
BseYI	CCCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	381
BspCNI	CTCAG	2 cut(s)	58, 199
BspFNI	CGCG	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	66, 207
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	15, 72
BstKTI	GATC	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 377, 386, 392, 395
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	74
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	310, 373, 383
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	2 cut(s)	15, 72
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	3 cut(s)	118, 382, 392
CviJI	RGCY	8 cut(s)	98, 206, 230, 251, 323, 355, 374, 386
CviKI_1	RGCY	8 cut(s)	98, 206, 230, 251, 323, 355, 374, 386
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	66, 207
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
DriI	GACNNNNNGTC	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	381
Eco57I	CTGAAG	2 cut(s)	222, 317
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	121, 385, 395
FaiI	YATR	4 cut(s)	119, 335, 383, 393
FalI	AAGNNNNNCTT	4 cut(s)	310, 342, 351, 383
FatI	CATG	3 cut(s)	117, 381, 391
Fnu4HI	GCNGC	5 cut(s)	324, 372, 387, 396, 399
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	5 cut(s)	324, 372, 387, 396, 399
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	2 cut(s)	14, 71
GluI	GCNGC	5 cut(s)	324, 372, 387, 396, 399
GsaI	CCCAGC	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	73
HhaI	GCGC	2 cut(s)	15, 72
Hin1II	CATG	3 cut(s)	121, 385, 395
Hin6I	GCGC	2 cut(s)	13, 70
HinP1I	GCGC	2 cut(s)	13, 70
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	2 cut(s)	50, 79
HpaI	GTTAAC	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	61, 297
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	110, 371, 395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 377, 386, 392, 395
HpyF3I	CTNAG	2 cut(s)	66, 207
Hsp92II	CATG	3 cut(s)	121, 385, 395
HspAI	GCGC	2 cut(s)	13, 70
KspAI	GTTAAC	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	38
LpnPI	CCDG	5 cut(s)	2, 23, 29, 229, 237
Lsp1109I	GCAGC	3 cut(s)	310, 373, 383
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	54
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	5 cut(s)	16, 48, 152, 281, 374
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	5 cut(s)	29, 105, 281, 305, 347
MlyI	GAGTC	2 cut(s)	44, 88
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	3 cut(s)	144, 166, 202
MseI	TTAA	2 cut(s)	158, 350
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	5 cut(s)	212, 377, 386, 392, 395
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	3 cut(s)	121, 385, 395
NspI	RCATGY	1 cut(s)	121
PkrI	GCNGC	5 cut(s)	325, 373, 388, 397, 400
PleI	GAGTC	2 cut(s)	44, 87
PpsI	GAGTC	2 cut(s)	44, 87
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	158, 350
SatI	GCNGC	5 cut(s)	324, 372, 387, 396, 399
Sau3AI	GATC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	44, 88
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	9 cut(s)	12, 59, 100, 208, 213, 232, 253, 357, 376
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	29, 105, 281, 305, 347
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	381
TasI	AATT	5 cut(s)	29, 105, 281, 305, 347
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	158, 350
Tru9I	TTAA	2 cut(s)	158, 350
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	5 cut(s)	323, 371, 386, 395, 398
TspDTI	ATGAA	2 cut(s)	17, 206
TspRI	CASTG	1 cut(s)	70
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.