Rmu_sc0004824.1_g000002

At3g49055-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004824.1
Physical Location & Seq
Reverse (-)
3533 .. 6010
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004824.1_g000002.1.cds

Sequence Viewer

Length: 1452 bp
atggaaaccgaaatcaacggttcagattccacacaaacctccgatcatgatctcctccgcgccgagctcgactccctccgccggtctcaccggagcctcctacagaagacggcggcgatggaggaagatttcaaccgcgtccagagccagcgagacgaggcggcggctcgcaacgccaagttgaccagactcgtcggagaagtttccggcgagagggacgctctaagggaagagcttcgcaaggtcgaagtcgagtatgcgatgaaaatcgatgaggaggtgaggaggaaggagagtctggagagtgaggttcgagtttgtaaggagagaattgagaggttggagattgagaggagagaaagagatgagtttttgatcaagtgcttggattcgctccggccgatcgagaaggagttgatcgggattattgaaggagtctgggacgaagaagatgacaaagaagtagttgagattgagaaggcggcaacgaatgtggaggaaggtgaagccgaattggaccatgtggtgagtttgacagaggagaatagggatatcagcacattgctgaggattgctttggtggagaaggaggctgtggagaagaggttgaaggggagcggtgagaccaagagggtggccattttgcagagagttggattcagtccgttcgggtttttgatgggaagtggaggcaatgagcagtcattggaggcttccggggctaaattggatggagctaaattggaaggaatggggtctggtgcgagtaacaagtcggatagcagtgagtgtgaagaggaggttgtaagtctggcatctactgtagagaagataatgaagaacctgcgcctggaaatcactcaattgagaagatctttggacgactctaggtcagacactgagcgcctacagagtctcacagagaaacaagctcaacaaattgcagaaaacatgctgtacatcaaggagttagaagacagagagagggtgttaactgaaaatgttgaggtacagatgattgaaatgaaggatgctgaagctgaggttgccagatggagagaagcttgtgagttggaagttgaagctgggaaaaatgagattgaagaacgcgaaaaattgattgccattctgaagcaagaattggagaaaacaagggctgctttggacatatcaaatggcaaattaaagctgaaagaagaacttgcagctaatgccatggctgctcatgcagcagcagagaagtcgctccagctggctgacagcagggcagcaggactccgtacccgaatagaggaactaacaagacagctggaagaagcagatagcagagagcgcaatagccgaagggtgagacatatatgttggccatggcgatccttcaaagtgaaccccgctaacaatgtgcgacgattgctaccagaaatgcaggccttgcttaattatagtgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

483

Amino Acids

54.98

Weight (kDa)

4.97

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 852
AccBSI CCGCTC 1 cut(s) 618
AccII CGCG 3 cut(s) 60, 138, 1110
AciI CCGC 9 cut(s) 58, 79, 113, 136, 161, 164, 482, 618, 1392
AclWI GGATC 1 cut(s) 1368
AcoI YGGCCR 3 cut(s) 398, 636, 1364
AcuI CTGAAG 2 cut(s) 1056, 1151
AfaI GTAC 3 cut(s) 959, 1011, 1282
AfiI CCNNNNNNNGG 4 cut(s) 81, 213, 850, 1291
AgsI TTSAA 7 cut(s) 133, 431, 610, 1022, 1082, 1103, 1381
AhdI GACNNNNNGTC 1 cut(s) 889
AjnI CCWGG 1 cut(s) 849
AjuI GAANNNNNNNTTGG 2 cut(s) 1124, 1156
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 5 cut(s) 90, 147, 617, 920, 1345
AlwI GGATC 1 cut(s) 1368
AlwNI CAGNNNCTG 1 cut(s) 899
AoxI GGCC 4 cut(s) 398, 636, 1364, 1428
ApeKI GCWGC 6 cut(s) 1157, 1205, 1220, 1229, 1232, 1268
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 4 cut(s) 62, 849, 906, 1335
AspS9I GGNCC 1 cut(s) 517
AsuC2I CCSGG 1 cut(s) 718
AsuHPI GGTGA 6 cut(s) 80, 292, 515, 538, 632, 1360
AvaII GGWCC 1 cut(s) 517
BalI TGGCCA 2 cut(s) 638, 1366
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 113, 981
Bbv12I GWGCWC 1 cut(s) 69
BbvCI CCTCAGC 2 cut(s) 566, 1041
BbvI GCAGC 6 cut(s) 1144, 1207, 1217, 1241, 1244, 1280
BccI CCATC 4 cut(s) 112, 673, 725, 1047
BceAI ACGGC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 1224, 1258
BciT130I CCWGG 1 cut(s) 851
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 1 cut(s) 718
BcoDI GTCTC 5 cut(s) 90, 147, 617, 920, 1345
BfaI CTAG 1 cut(s) 888
BfmI CTRYAG 3 cut(s) 101, 822, 908
BfoI RGCGCY 1 cut(s) 907
BfuAI ACCTGC 1 cut(s) 852
BglII AGATCT 1 cut(s) 872
Bme1390I CCNGG 2 cut(s) 718, 851
Bme18I GGWCC 1 cut(s) 517
BmeRI GACNNNNNGTC 1 cut(s) 889
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 718, 851
BmsI GCATC 2 cut(s) 824, 1021
BpiI GAAGAC 2 cut(s) 113, 981
BplI GAGNNNNNCTC 4 cut(s) 56, 88, 205, 237
BpmI CTGGAG 2 cut(s) 320, 1232
Bpu10I CCTNAGC 2 cut(s) 566, 1041
BpuMI CCSGG 1 cut(s) 718
Bsa29I ATCGAT 1 cut(s) 270
BsaBI GATNNNNATC 2 cut(s) 48, 266
BsaI GGTCTC 2 cut(s) 90, 617
BsaJI CCNNGG 3 cut(s) 717, 1215, 1367
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 213, 850, 1291
Bse118I RCCGGY 1 cut(s) 81
Bse3DI GCAATG 2 cut(s) 560, 700
Bse8I GATNNNNATC 2 cut(s) 48, 266
BseBI CCWGG 1 cut(s) 851
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 717, 1215, 1367
BseGI GGATG 2 cut(s) 736, 1036
BseJI GATNNNNATC 2 cut(s) 48, 266
BseLI CCNNNNNNNGG 4 cut(s) 81, 213, 850, 1291
BseMI GCAATG 2 cut(s) 560, 700
BseMII CTCAG 3 cut(s) 557, 891, 1032
BseRI GAGGAG 6 cut(s) 44, 290, 298, 367, 554, 812
BseX3I CGGCCG 1 cut(s) 398
BseXI GCAGC 6 cut(s) 1144, 1207, 1217, 1241, 1244, 1280
BseYI CCCAGC 1 cut(s) 1085
Bsh1236I CGCG 3 cut(s) 60, 138, 1110
Bsh1285I CGRYCG 2 cut(s) 401, 405
BshFI GGCC 4 cut(s) 400, 638, 1366, 1430
BshVI ATCGAT 1 cut(s) 270
BsiEI CGRYCG 2 cut(s) 401, 405
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 5 cut(s) 82, 91, 207, 397, 717
BslFI GGGAC 2 cut(s) 230, 455
BslI CCNNNNNNNGG 4 cut(s) 81, 213, 850, 1291
BsmAI GTCTC 5 cut(s) 90, 147, 617, 920, 1345
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 2 cut(s) 230, 455
BsnI GGCC 4 cut(s) 400, 638, 1366, 1430
Bso31I GGTCTC 2 cut(s) 90, 617
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1407I TGTACA 1 cut(s) 957
Bsp143I GATC 7 cut(s) 43, 49, 375, 402, 417, 872, 1373
Bsp19I CCATGG 2 cut(s) 1215, 1367
BspACI CCGC 9 cut(s) 58, 79, 113, 136, 161, 164, 482, 618, 1392
BspANI GGCC 4 cut(s) 400, 638, 1366, 1430
BspCNI CTCAG 3 cut(s) 558, 892, 1033
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 3 cut(s) 60, 138, 1110
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 852
BspPI GGATC 1 cut(s) 1368
BspQI GCTCTTC 1 cut(s) 225
BspTNI GGTCTC 2 cut(s) 90, 617
BsrBI CCGCTC 1 cut(s) 618
BsrDI GCAATG 2 cut(s) 560, 700
BsrFI RCCGGY 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 957
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 3 cut(s) 717, 1215, 1367
BssMI GATC 7 cut(s) 43, 49, 375, 402, 417, 872, 1373
BssT1I CCWWGG 2 cut(s) 1215, 1367
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 2 cut(s) 20, 823
Bst6I CTCTTC 3 cut(s) 225, 596, 789
BstAPI GCANNNNNTGC 2 cut(s) 1211, 1432
BstAUI TGTACA 1 cut(s) 957
BstC8I GCNNGC 4 cut(s) 149, 169, 1254, 1428
BstDEI CTNAG 4 cut(s) 224, 566, 900, 1041
BstDSI CCRYGG 2 cut(s) 1215, 1367
BstF5I GGATG 2 cut(s) 736, 1036
BstFNI CGCG 3 cut(s) 60, 138, 1110
BstH2I RGCGCY 1 cut(s) 907
BstHHI GCGC 4 cut(s) 62, 849, 906, 1335
BstKTI GATC 7 cut(s) 46, 52, 378, 405, 420, 875, 1376
BstMAI GTCTC 5 cut(s) 90, 147, 617, 920, 1345
BstMBI GATC 7 cut(s) 43, 49, 375, 402, 417, 872, 1373
BstMCI CGRYCG 2 cut(s) 401, 405
BstNI CCWGG 1 cut(s) 851
BstNSI RCATGY 1 cut(s) 955
BstSCI CCNGG 2 cut(s) 716, 849
BstSFI CTRYAG 3 cut(s) 101, 822, 908
BstUI CGCG 3 cut(s) 60, 138, 1110
BstV1I GCAGC 6 cut(s) 1144, 1207, 1217, 1241, 1244, 1280
BstV2I GAAGAC 2 cut(s) 113, 981
BstX2I RGATCY 1 cut(s) 872
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 1 cut(s) 872
BstZI CGGCCG 1 cut(s) 398
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 4 cut(s) 400, 638, 1366, 1430
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 2 cut(s) 1215, 1367
BtgZI GCGATG 2 cut(s) 131, 275
BtsCI GGATG 2 cut(s) 736, 1036
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 2 cut(s) 790, 897
BveI ACCTGC 1 cut(s) 852
Cac8I GCNNGC 4 cut(s) 149, 169, 1254, 1428
CaiI CAGNNNCTG 1 cut(s) 899
CciI TCATGA 1 cut(s) 46
CfoI GCGC 4 cut(s) 62, 849, 906, 1335
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 517
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 2 cut(s) 127, 227
Csp6I GTAC 3 cut(s) 958, 1010, 1281
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 6 cut(s) 47, 521, 952, 1216, 1226, 1368
CviQI GTAC 3 cut(s) 958, 1010, 1281
DdeI CTNAG 4 cut(s) 224, 566, 900, 1041
DpnI GATC 7 cut(s) 45, 51, 377, 404, 419, 874, 1375
DpnII GATC 7 cut(s) 43, 49, 375, 402, 417, 872, 1373
DriI GACNNNNNGTC 1 cut(s) 889
EaeI YGGCCR 3 cut(s) 398, 636, 1364
EagI CGGCCG 1 cut(s) 398
Eam1104I CTCTTC 3 cut(s) 225, 596, 789
Eam1105I GACNNNNNGTC 1 cut(s) 889
EarI CTCTTC 3 cut(s) 225, 596, 789
EciI GGCGGA 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 1215, 1367
Eco147I AGGCCT 1 cut(s) 1430
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 2 cut(s) 90, 617
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 517
Eco52I CGGCCG 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 1056, 1151
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 849
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 2 cut(s) 1215, 1367
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 1215, 1367
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 6 cut(s) 50, 524, 955, 1219, 1229, 1371
FalI AAGNNNNNCTT 4 cut(s) 1144, 1176, 1185, 1217
FaqI GGGAC 2 cut(s) 230, 455
FatI CATG 6 cut(s) 46, 520, 951, 1215, 1225, 1367
FauI CCCGC 1 cut(s) 1399
FbaI TGATCA 1 cut(s) 375
FokI GGATG 2 cut(s) 743, 1043
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 1 cut(s) 888
GlaI GCGC 4 cut(s) 61, 848, 905, 1334
GsaI CCCAGC 1 cut(s) 1089
GsuI CTGGAG 2 cut(s) 320, 1232
HaeII RGCGCY 1 cut(s) 907
HaeIII GGCC 4 cut(s) 400, 638, 1366, 1430
HapII CCGG 5 cut(s) 82, 91, 207, 397, 717
HgaI GACGC 2 cut(s) 127, 227
HhaI GCGC 4 cut(s) 62, 849, 906, 1335
Hin1II CATG 6 cut(s) 50, 524, 955, 1219, 1229, 1371
Hin6I GCGC 4 cut(s) 60, 847, 904, 1333
HinP1I GCGC 4 cut(s) 60, 847, 904, 1333
HincII GTYRAC 2 cut(s) 183, 993
HindII GTYRAC 2 cut(s) 183, 993
HindIII AAGCTT 1 cut(s) 1062
HpaI GTTAAC 1 cut(s) 993
HpaII CCGG 5 cut(s) 82, 91, 207, 397, 717
HphI GGTGA 6 cut(s) 80, 292, 515, 538, 632, 1360
Hpy166II GTNNAC 3 cut(s) 183, 993, 1387
Hpy188I TCNGA 6 cut(s) 25, 43, 197, 778, 895, 1131
Hpy188III TCNNGA 5 cut(s) 47, 142, 299, 406, 421
Hpy8I GTNNAC 3 cut(s) 183, 993, 1387
Hpy99I CGWCG 2 cut(s) 197, 1410
HpyCH4III ACNGT 2 cut(s) 20, 823
HpyCH4V TGCA 5 cut(s) 646, 944, 1205, 1229, 1426
HpyF3I CTNAG 4 cut(s) 224, 566, 900, 1041
Hsp92II CATG 6 cut(s) 50, 524, 955, 1219, 1229, 1371
HspAI GCGC 4 cut(s) 60, 847, 904, 1333
Ksp22I TGATCA 1 cut(s) 375
KspAI GTTAAC 1 cut(s) 993
Kzo9I GATC 7 cut(s) 43, 49, 375, 402, 417, 872, 1373
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 5 cut(s) 93, 399, 615, 734, 1251
Lsp1109I GCAGC 6 cut(s) 1144, 1207, 1217, 1241, 1244, 1280
LweI GCATC 2 cut(s) 824, 1021
MaeI CTAG 1 cut(s) 888
MaeIII GTNAC 1 cut(s) 767
MalI GATC 7 cut(s) 45, 51, 377, 404, 419, 874, 1375
MbiI CCGCTC 1 cut(s) 618
MboI GATC 7 cut(s) 43, 49, 375, 402, 417, 872, 1373
MfeI CAATTG 1 cut(s) 863
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 2 cut(s) 638, 1366
MluNI TGGCCA 2 cut(s) 638, 1366
MlyI GAGTC 7 cut(s) 65, 183, 304, 444, 878, 922, 1269
MmeI TCCRAC 5 cut(s) 175, 321, 634, 756, 1053
Mox20I TGGCCA 2 cut(s) 638, 1366
MroXI GAANNNNTTC 1 cut(s) 234
MscI TGGCCA 2 cut(s) 638, 1366
MseI TTAA 3 cut(s) 992, 1184, 1437
Msp20I TGGCCA 2 cut(s) 638, 1366
MspA1I CMGCKG 2 cut(s) 1252, 1309
MspI CCGG 5 cut(s) 82, 91, 207, 397, 717
MspR9I CCNGG 2 cut(s) 718, 851
MunI CAATTG 1 cut(s) 863
MvaI CCWGG 1 cut(s) 851
MvnI CGCG 3 cut(s) 60, 138, 1110
NciI CCSGG 1 cut(s) 718
NcoI CCATGG 2 cut(s) 1215, 1367
NdeII GATC 7 cut(s) 43, 49, 375, 402, 417, 872, 1373
NlaIII CATG 6 cut(s) 50, 524, 955, 1219, 1229, 1371
NlaIV GGNNCC 1 cut(s) 95
NmeAIII GCCGAG 1 cut(s) 88
NspI RCATGY 1 cut(s) 955
PagI TCATGA 1 cut(s) 46
PceI AGGCCT 1 cut(s) 1430
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 26, 389, 657
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 7 cut(s) 65, 183, 303, 443, 878, 921, 1269
PpsI GAGTC 7 cut(s) 65, 183, 303, 443, 878, 921, 1269
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 849
PspFI CCCAGC 1 cut(s) 1085
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 1 cut(s) 872
PvuI CGATCG 1 cut(s) 405
PvuII CAGCTG 2 cut(s) 1252, 1309
RsaI GTAC 3 cut(s) 959, 1011, 1282
RsaNI GTAC 3 cut(s) 958, 1010, 1281
SacI GAGCTC 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 992, 1184, 1437
Sau3AI GATC 7 cut(s) 43, 49, 375, 402, 417, 872, 1373
Sau96I GGNCC 1 cut(s) 517
SchI GAGTC 7 cut(s) 65, 183, 304, 444, 878, 922, 1269
ScrFI CCNGG 2 cut(s) 718, 851
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 824, 1021
SfcI CTRYAG 3 cut(s) 101, 822, 908
SinI GGWCC 1 cut(s) 517
SseBI AGGCCT 1 cut(s) 1430
SsiI CCGC 9 cut(s) 58, 79, 113, 136, 161, 164, 482, 618, 1392
SspMI CTAG 1 cut(s) 888
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 1430
StyD4I CCNGG 2 cut(s) 716, 849
StyI CCWWGG 2 cut(s) 1215, 1367
TaaI ACNGT 2 cut(s) 20, 823
TaqI TCGA 6 cut(s) 69, 246, 252, 270, 313, 405
TatI WGTACW 1 cut(s) 957
TauI GCSGC 4 cut(s) 116, 164, 167, 485
TfiI GAWTC 3 cut(s) 26, 389, 657
Tru1I TTAA 3 cut(s) 992, 1184, 1437
Tru9I TTAA 3 cut(s) 992, 1184, 1437
TscAI CASTG 2 cut(s) 790, 904
TseI GCWGC 6 cut(s) 1157, 1205, 1220, 1229, 1232, 1268
TspDTI ATGAA 3 cut(s) 278, 851, 1040
TspGWI ACGGA 2 cut(s) 654, 1268
TspRI CASTG 2 cut(s) 790, 904
VpaK11BI GGWCC 1 cut(s) 517
XceI RCATGY 1 cut(s) 955
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.