Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041379.1

Orthogroup ID

OG0005360

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1584

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041379.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

gcatgtactgtagagaagataatgaagaacctgcgcctggaaatcactcaattgagaagatctttggacgactctaggtcagacactgagcgcctacagagtctcacagagaaacaagctcaacaaattgcagaaaacatgctgtacatcaaggagttagaagacagagagagggtgttaactgaaaatgttgaggcacagatgattgaaatgaaggatgctgaagctgaggttgccagatggagagaagcttgtgagttggaagttgaagctgggaaaaatgagattgaagaacgcgaaaaattgattgccattctgaagcaagaattggagaaaacaagggctgctttggacatatcaaatggcaaattaaagctgaaagaagaacttgcagctaatgccatggctgctcatgcagcagcagagaagtccctccagctggctgacagcagggcagcaggactccgtacccgaatagaggaactaacaagacagctggaagaagcagatagcagagagcgcaatagccgaagggtgagacatatatgttggccatggcgatccttcaaagtgaaccccgctaacaatgtgcgacgattgctaccagaaatgcaggccttgcttaattatagtgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

24.51

Weight (kDa)

5.74

Isoelectric Point (pI)

69.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49055
fragaria_vesca	FvH4_7g29830 FvH4_7g29830 FvH4_7g29830 FvH4_7g29830 FvH4_7g29830
malus_domestica	MD01G1204900.v1.1 MD07G1273400.v1.1
prunus_persica	Prupe.2G297300_v2.0.a1
pyrus_communis	pycom01g21450 pycom07g25000
rosa_chinensis	RchiOBHm_Chr1g0377801
rosa_laevigata	RLG00000026497
rosa_multiflora	Rmu_co8376285.1_g000001 Rmu_sc0004824.1_g000002 Rmu_sc0036419.1_g000001 Rmu_sc0040831.1_g000001 Rmu_sc0041379.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029020 Rroxscaffold_4G00281050
rosa_rugosa	Rorug01G0405200
rosa_samantha	Rh1AG427200 Rh1BG382100 Rh1CG396000 Rh1DG413100 Rh5BG351000 Rh5CG377200 Rh5DG364900
rosa_wichuraiana	Rw1G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AccII	CGCG	1 cut(s)	297
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	1 cut(s)	555
AcoI	YGGCCR	1 cut(s)	551
AcuI	CTGAAG	2 cut(s)	243, 338
AfaI	GTAC	3 cut(s)	7, 146, 469
AfiI	CCNNNNNNNGG	3 cut(s)	37, 439, 478
AgsI	TTSAA	4 cut(s)	209, 269, 290, 568
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	8 cut(s)	119, 227, 251, 272, 376, 395, 439, 496
AluI	AGCT	8 cut(s)	119, 227, 251, 272, 376, 395, 439, 496
Alw26I	GTCTC	2 cut(s)	107, 532
AlwI	GGATC	1 cut(s)	555
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	551, 615
ApeKI	GCWGC	6 cut(s)	344, 392, 407, 416, 419, 455
AspLEI	GCGC	3 cut(s)	36, 93, 522
AsuHPI	GGTGA	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	6 cut(s)	331, 394, 404, 428, 431, 467
BccI	CCATC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	107, 532
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	2 cut(s)	9, 95
BfoI	RGCGCY	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	39
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	6 cut(s)	345, 393, 408, 417, 420, 456
BlsI	GCNGC	6 cut(s)	346, 394, 409, 418, 421, 457
Bme1390I	CCNGG	1 cut(s)	38
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	402, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 439, 478
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	402, 554
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	3 cut(s)	37, 439, 478
BseMII	CTCAG	2 cut(s)	78, 219
BseXI	GCAGC	6 cut(s)	331, 394, 404, 428, 431, 467
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	553, 617
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	3 cut(s)	37, 439, 478
BsmAI	GTCTC	2 cut(s)	107, 532
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	553, 617
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	59, 560
Bsp19I	CCATGG	2 cut(s)	402, 554
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	2 cut(s)	553, 617
BspCNI	CTCAG	2 cut(s)	79, 220
BspFNI	CGCG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	555
BsrGI	TGTACA	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	402, 554
BssMI	GATC	2 cut(s)	59, 560
BssT1I	CCWWGG	2 cut(s)	402, 554
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	10
BstAPI	GCANNNNNTGC	2 cut(s)	398, 619
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	441, 615
BstDEI	CTNAG	2 cut(s)	87, 228
BstDSI	CCRYGG	2 cut(s)	402, 554
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	3 cut(s)	36, 93, 522
BstKTI	GATC	2 cut(s)	62, 563
BstMAI	GTCTC	2 cut(s)	107, 532
BstMBI	GATC	2 cut(s)	59, 560
BstMWI	GCNNNNNNNGC	8 cut(s)	233, 398, 407, 413, 416, 519, 598, 619
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	2 cut(s)	6, 142
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	2 cut(s)	9, 95
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	6 cut(s)	331, 394, 404, 428, 431, 467
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	553, 617
BtgI	CCRYGG	2 cut(s)	402, 554
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	441, 615
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	3 cut(s)	36, 93, 522
Csp6I	GTAC	3 cut(s)	6, 145, 468
CviAII	CATG	5 cut(s)	3, 139, 403, 413, 555
CviQI	GTAC	3 cut(s)	6, 145, 468
DdeI	CTNAG	2 cut(s)	87, 228
DpnI	GATC	2 cut(s)	61, 562
DpnII	GATC	2 cut(s)	59, 560
DriI	GACNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	551
Eam1105I	GACNNNNNGTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	402, 554
Eco147I	AGGCCT	1 cut(s)	617
Eco57I	CTGAAG	2 cut(s)	243, 338
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	402, 554
ErhI	CCWWGG	2 cut(s)	402, 554
FaeI	CATG	5 cut(s)	6, 142, 406, 416, 558
FalI	AAGNNNNNCTT	4 cut(s)	331, 363, 372, 404
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	5 cut(s)	2, 138, 402, 412, 554
FauI	CCCGC	1 cut(s)	586
Fnu4HI	GCNGC	6 cut(s)	345, 393, 408, 417, 420, 456
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	6 cut(s)	345, 393, 408, 417, 420, 456
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	3 cut(s)	35, 92, 521
GluI	GCNGC	6 cut(s)	345, 393, 408, 417, 420, 456
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	419
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	553, 617
HhaI	GCGC	3 cut(s)	36, 93, 522
Hin1II	CATG	5 cut(s)	6, 142, 406, 416, 558
Hin6I	GCGC	3 cut(s)	34, 91, 520
HinP1I	GCGC	3 cut(s)	34, 91, 520
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	3 cut(s)	71, 100, 462
HpaI	GTTAAC	1 cut(s)	180
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	2 cut(s)	180, 574
Hpy188I	TCNGA	2 cut(s)	82, 318
Hpy8I	GTNNAC	2 cut(s)	180, 574
Hpy99I	CGWCG	1 cut(s)	597
HpyAV	CCTTC	3 cut(s)	208, 525, 574
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	131, 392, 416, 613
HpyF10VI	GCNNNNNNNGC	8 cut(s)	233, 398, 407, 413, 416, 519, 598, 619
HpyF3I	CTNAG	2 cut(s)	87, 228
Hsp92II	CATG	5 cut(s)	6, 142, 406, 416, 558
HspAI	GCGC	3 cut(s)	34, 91, 520
KspAI	GTTAAC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	59, 560
Lsp1109I	GCAGC	6 cut(s)	331, 394, 404, 428, 431, 467
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	75
MalI	GATC	2 cut(s)	61, 562
MboI	GATC	2 cut(s)	59, 560
MboII	GAAGA	7 cut(s)	28, 37, 69, 173, 302, 395, 512
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	553
MluCI	AATT	6 cut(s)	50, 126, 302, 326, 368, 625
MluNI	TGGCCA	1 cut(s)	553
MlyI	GAGTC	3 cut(s)	65, 109, 456
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	5 cut(s)	165, 187, 223, 443, 472
Mox20I	TGGCCA	1 cut(s)	553
MscI	TGGCCA	1 cut(s)	553
MseI	TTAA	3 cut(s)	179, 371, 624
Msp20I	TGGCCA	1 cut(s)	553
MspA1I	CMGCKG	2 cut(s)	439, 496
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	8 cut(s)	233, 398, 407, 413, 416, 519, 598, 619
NcoI	CCATGG	2 cut(s)	402, 554
NdeII	GATC	2 cut(s)	59, 560
NlaIII	CATG	5 cut(s)	6, 142, 406, 416, 558
NspI	RCATGY	2 cut(s)	6, 142
PceI	AGGCCT	1 cut(s)	617
PkrI	GCNGC	6 cut(s)	346, 394, 409, 418, 421, 457
PleI	GAGTC	3 cut(s)	65, 108, 456
PpsI	GAGTC	3 cut(s)	65, 108, 456
Psp6I	CCWGG	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	59
PvuII	CAGCTG	2 cut(s)	439, 496
RsaI	GTAC	3 cut(s)	7, 146, 469
RsaNI	GTAC	3 cut(s)	6, 145, 468
SaqAI	TTAA	3 cut(s)	179, 371, 624
SatI	GCNGC	6 cut(s)	345, 393, 408, 417, 420, 456
Sau3AI	GATC	2 cut(s)	59, 560
SchI	GAGTC	3 cut(s)	65, 109, 456
ScrFI	CCNGG	1 cut(s)	38
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	2 cut(s)	9, 95
Sse9I	AATT	6 cut(s)	50, 126, 302, 326, 368, 625
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	2 cut(s)	402, 554
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	6 cut(s)	50, 126, 302, 326, 368, 625
TatI	WGTACW	2 cut(s)	5, 144
Tru1I	TTAA	3 cut(s)	179, 371, 624
Tru9I	TTAA	3 cut(s)	179, 371, 624
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	6 cut(s)	344, 392, 407, 416, 419, 455
TspDTI	ATGAA	2 cut(s)	38, 227
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	91
XceI	RCATGY	2 cut(s)	6, 142
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.