MD07G1273400.v1.1

At3g49055-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
33928396 .. 33931023
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1273400.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGGAAAACGCTACAGAAACACTCCCCGACCCCCAAATCAACGGCCCAGATCCCCCGAACAACCCAGAAACCTCCGAACCCGATCATGTTCTTCTCGCCGAGCTCGAGTCCCTCTGCCAGTTGCACCAGAGCCTGCTATCGAAGGCGGCGGCGATGGAGAAAGAGTCTAATATCATCCGGCAGCAGAGAGACGACGCCCTGGCTCGCAACGCCGAGCTAATTGAAGTCGTCGGAGAAATTTCCGGCGAGAGAGACTCTCTTCGCGGCGAAATTCAGAAGCTCGAAGGTTCTCTGAGAGAAAATGAAGATGGGTTTGCTTCCAAATTGGAGGAGGAGTTGAAGACGAAGGAGGCGATTGAAGACGAGGTGCGAGTTTGTCGGGGGACGATTGAAAGGTTGGAGCTTGAGAGAAAAGAGAGAGATGTGTTTTTGTTGAAGTGCCTGGATTCGCTCCGATCGACCAAGGAGGGCATAATCGGAATAATCGACGGCGTCGGCGACGAAAAGGCTGAGAATGGAGCTGAAGAAGCTGAGGGGGTTTGGGAGGAGAGTGCGGCGGTTGGGCGGCTGGCAGCTTCGGCGGAAGCGAAGGTGAGTGAGTATAAAGAGCTGAGGAAGAAGGAGAAGAAGGAGTTGGAGAAAAGCGTGGTGAGTCTGACAGAGGAGAATAGGGATATCAGCAGCTTGCTGAGGGTTGCTCTGGTGGAGAAGGAGGCGGTGGAGAAGAAGTTGAAAGGAAACAGCGAGCAGAAGCGGGTGGCGCTTTTGCAGATTGCGGAGAGGGGTTTGCAGAGAGTTGGGTTTGGGTTTATGATGGGAAGTGGGGGCAATGAGCAGTCGCTGGAGAGTTCCGGGGATAAACTGGACGGTGCAGGGTCTACCGCCGGAAGTAAATCAGATAGTAGTGACTTTGAAGAGGGGGTTATCAGTCTGGCATCGACGGTAGAGAAGATAATGAAGAACCTGCGGCTCGAGATCACTCAGTTGAGAAGATCTCTGGAAGAATCTAGGTCAGACACTGAGCGCTTACAGAGTCTCACGGAAAAGCAAGCTCAAGAAATTTCGGAAAACATGCAGTACATCAAGGAGTTAGAAGATAGAGAGAGGGCGTTAACTCAAAATGTTGAAGAACTCGTGATCGAAACAAAGGAAGGTGAAGCAGAGGTTGCTAGATGGAGAGAAGCTTGCGAGCTAGAAGTTGAAGCCGGGAAAACTGAGATAGGAGAACGTGAGAAAGTGATCGCCATTCTAAAGCAAGAATTGGAGAAGACAAAGACGGCTTTGGACGTATCAAATGCCAAACTGAAGCTGAAAGAAGAACTTGCAGCAACCGCTATGGCTGCACAGGCAGCAGCAGAGAGATCCCTGCAGCTGACTGACAGCAGGACATCAGGACTGCGGAAGCGTATAGAAGAACTATCAAAACAAGTAGAAGAAGCAGAAAGCAGAGAGCGCAATAACCGAAGGGTGAGATGCATATGTTGGCCATGGCGACCCCTCAAAGCTGCCAACACTGCACAAAACAGAATCGGGCCTGTAAGACGGTTGCTACCAGAAATGCAAGCCTTGCTTCACTACAGCGGTTGGGAGCGCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

533

Amino Acids

59.54

Weight (kDa)

4.96

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 972
AccI GTMKAC 1 cut(s) 878
AccII CGCG 1 cut(s) 264
AclWI GGATC 2 cut(s) 44, 1356
AcoI YGGCCR 1 cut(s) 1484
AcsI RAATTY 3 cut(s) 237, 270, 1059
AcuI CTGAAG 2 cut(s) 543, 1325
AcyI GRCGYC 2 cut(s) 195, 492
AfaI GTAC 1 cut(s) 1079
AfeI AGCGCT 2 cut(s) 1025, 1592
AgsI TTSAA 9 cut(s) 224, 340, 359, 392, 436, 733, 914, 1127, 1202
AjnI CCWGG 2 cut(s) 198, 441
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 183, 246, 1040
AlwI GGATC 2 cut(s) 44, 1356
AlwNI CAGNNNCTG 3 cut(s) 133, 841, 1019
Ama87I CYCGRG 2 cut(s) 104, 971
Aor51HI AGCGCT 2 cut(s) 1025, 1592
AoxI GGCC 3 cut(s) 43, 1484, 1532
ApeKI GCWGC 9 cut(s) 181, 572, 681, 1325, 1340, 1349, 1352, 1369, 1505
ApoI RAATTY 3 cut(s) 237, 270, 1059
AspLEI GCGC 4 cut(s) 763, 1026, 1455, 1593
AspS9I GGNCC 2 cut(s) 44, 1532
AsuC2I CCSGG 2 cut(s) 853, 1207
AsuHPI GGTGA 4 cut(s) 604, 661, 1166, 1480
AvaI CYCGRG 2 cut(s) 104, 971
BalI TGGCCA 1 cut(s) 1486
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 1133
BbsI GAAGAC 3 cut(s) 347, 366, 1274
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 3 cut(s) 531, 611, 689
BbvI GCAGC 9 cut(s) 193, 584, 693, 1327, 1337, 1361, 1364, 1381, 1492
BccI CCATC 4 cut(s) 148, 302, 808, 1167
BceAI ACGGC 3 cut(s) 58, 505, 1293
BciT130I CCWGG 2 cut(s) 200, 443
BcnI CCSGG 2 cut(s) 853, 1207
BcoDI GTCTC 3 cut(s) 183, 246, 1040
BfaI CTAG 3 cut(s) 1008, 1170, 1193
BfmI CTRYAG 3 cut(s) 12, 1367, 1576
BfoI RGCGCY 3 cut(s) 764, 1027, 1594
BfuAI ACCTGC 1 cut(s) 972
BglII AGATCT 1 cut(s) 992
Bme1390I CCNGG 4 cut(s) 200, 443, 853, 1207
BmeT110I CYCGRG 2 cut(s) 104, 971
BmgT120I GGNCC 2 cut(s) 44, 1532
BmrFI CCNGG 4 cut(s) 200, 443, 853, 1207
BmsI GCATC 2 cut(s) 944, 1463
BpiI GAAGAC 3 cut(s) 347, 366, 1274
BplI GAGNNNNNCTC 8 cut(s) 239, 271, 241, 273, 682, 714, 979, 1011
BpmI CTGGAG 1 cut(s) 863
Bpu10I CCTNAGC 3 cut(s) 531, 611, 689
BpuEI CTTGAG 2 cut(s) 425, 1038
BpuMI CCSGG 2 cut(s) 853, 1207
BsaHI GRCGYC 2 cut(s) 195, 492
BsaJI CCNNGG 4 cut(s) 198, 462, 852, 1487
BsaXI ACNNNNNCTCC 7 cut(s) 149, 179, 320, 350, 713, 743, 1580
Bse1I ACTGG 2 cut(s) 118, 867
Bse3DI GCAATG 1 cut(s) 835
BseBI CCWGG 2 cut(s) 200, 443
BseDI CCNNGG 4 cut(s) 198, 462, 852, 1487
BseGI GGATG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 8 cut(s) 284, 501, 522, 602, 680, 995, 1011, 1206
BseNI ACTGG 2 cut(s) 118, 867
BseRI GAGGAG 4 cut(s) 344, 347, 560, 677
BseXI GCAGC 9 cut(s) 193, 584, 693, 1327, 1337, 1361, 1364, 1381, 1492
BsgI GTGCAG 3 cut(s) 891, 1326, 1500
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 3 cut(s) 45, 1486, 1534
BsiEI CGRYCG 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 2 cut(s) 104, 971
BsiSI CCGG 5 cut(s) 178, 243, 852, 885, 1206
BslFI GGGAC 2 cut(s) 94, 397
BsmAI GTCTC 3 cut(s) 183, 246, 1040
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 94, 397
BsnI GGCC 3 cut(s) 45, 1486, 1534
BsoBI CYCGRG 2 cut(s) 104, 971
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 8 cut(s) 49, 82, 455, 975, 992, 1137, 1239, 1361
Bsp19I CCATGG 1 cut(s) 1487
BspANI GGCC 3 cut(s) 45, 1486, 1534
BspCNI CTCAG 8 cut(s) 285, 502, 523, 603, 681, 994, 1012, 1207
BspFNI CGCG 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 1371
BspMI ACCTGC 1 cut(s) 972
BspPI GGATC 2 cut(s) 44, 1356
BsrDI GCAATG 1 cut(s) 835
BsrI ACTGG 2 cut(s) 118, 867
BssECI CCNNGG 4 cut(s) 198, 462, 852, 1487
BssMI GATC 8 cut(s) 49, 82, 455, 975, 992, 1137, 1239, 1361
BssNI GRCGYC 2 cut(s) 195, 492
BssSI CACGAG 1 cut(s) 1133
BssT1I CCWWGG 2 cut(s) 462, 1487
Bst2BI CACGAG 1 cut(s) 1133
Bst2UI CCWGG 2 cut(s) 200, 443
Bst4CI ACNGT 3 cut(s) 869, 943, 1545
Bst6I CTCTTC 2 cut(s) 264, 909
BstACI GRCGYC 2 cut(s) 195, 492
BstAPI GCANNNNNTGC 2 cut(s) 1166, 1567
BstC8I GCNNGC 9 cut(s) 134, 205, 570, 686, 746, 1050, 1186, 1190, 1563
BstDEI CTNAG 8 cut(s) 293, 510, 531, 611, 689, 981, 1020, 1215
BstDSI CCRYGG 1 cut(s) 1487
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 3 cut(s) 764, 1027, 1594
BstHHI GCGC 4 cut(s) 763, 1026, 1455, 1593
BstKTI GATC 8 cut(s) 52, 85, 458, 978, 995, 1140, 1242, 1364
BstMAI GTCTC 3 cut(s) 183, 246, 1040
BstMBI GATC 8 cut(s) 49, 82, 455, 975, 992, 1137, 1239, 1361
BstMCI CGRYCG 1 cut(s) 458
BstNI CCWGG 2 cut(s) 200, 443
BstNSI RCATGY 1 cut(s) 1075
BstSCI CCNGG 4 cut(s) 198, 441, 851, 1205
BstSFI CTRYAG 3 cut(s) 12, 1367, 1576
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 9 cut(s) 193, 584, 693, 1327, 1337, 1361, 1364, 1381, 1492
BstV2I GAAGAC 3 cut(s) 347, 366, 1274
BstX2I RGATCY 3 cut(s) 49, 992, 1361
BstYI RGATCY 3 cut(s) 49, 992, 1361
BsuRI GGCC 3 cut(s) 45, 1486, 1534
BtgI CCRYGG 1 cut(s) 1487
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 1512
BtsIMutI CAGTG 2 cut(s) 1017, 1512
BveI ACCTGC 1 cut(s) 972
Cac8I GCNNGC 9 cut(s) 134, 205, 570, 686, 746, 1050, 1186, 1190, 1563
CaiI CAGNNNCTG 3 cut(s) 133, 841, 1019
CfoI GCGC 4 cut(s) 763, 1026, 1455, 1593
Cfr13I GGNCC 2 cut(s) 44, 1532
CseI GACGC 2 cut(s) 203, 481
Csp6I GTAC 1 cut(s) 1078
CviAII CATG 3 cut(s) 86, 1072, 1488
CviQI GTAC 1 cut(s) 1078
DdeI CTNAG 8 cut(s) 293, 510, 531, 611, 689, 981, 1020, 1215
DpnI GATC 8 cut(s) 51, 84, 457, 977, 994, 1139, 1241, 1363
DpnII GATC 8 cut(s) 49, 82, 455, 975, 992, 1137, 1239, 1361
EaeI YGGCCR 1 cut(s) 1484
Eam1104I CTCTTC 2 cut(s) 264, 909
EarI CTCTTC 2 cut(s) 264, 909
EciI GGCGGA 1 cut(s) 596
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 462, 1487
Eco24I GRGCYC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 676
Eco47III AGCGCT 2 cut(s) 1025, 1592
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 543, 1325
Eco88I CYCGRG 2 cut(s) 104, 971
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 198, 441
EcoRV GATATC 1 cut(s) 676
EcoT14I CCWWGG 2 cut(s) 462, 1487
EcoT22I ATGCAT 1 cut(s) 1478
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 462, 1487
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 3 cut(s) 89, 1075, 1491
FalI AAGNNNNNCTT 4 cut(s) 1305, 1337, 1554, 1586
FaqI GGGAC 2 cut(s) 94, 397
FatI CATG 3 cut(s) 85, 1071, 1487
FauI CCCGC 1 cut(s) 747
FauNDI CATATG 1 cut(s) 1478
FblI GTMKAC 1 cut(s) 878
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 3 cut(s) 1008, 1170, 1193
GlaI GCGC 4 cut(s) 762, 1025, 1454, 1592
GsuI CTGGAG 1 cut(s) 863
HaeII RGCGCY 3 cut(s) 764, 1027, 1594
HaeIII GGCC 3 cut(s) 45, 1486, 1534
HapII CCGG 5 cut(s) 178, 243, 852, 885, 1206
HgaI GACGC 2 cut(s) 203, 481
HhaI GCGC 4 cut(s) 763, 1026, 1455, 1593
Hin1I GRCGYC 2 cut(s) 195, 492
Hin1II CATG 3 cut(s) 89, 1075, 1491
Hin6I GCGC 4 cut(s) 761, 1024, 1453, 1591
HinP1I GCGC 4 cut(s) 761, 1024, 1453, 1591
HincII GTYRAC 1 cut(s) 1113
HindII GTYRAC 1 cut(s) 1113
HindIII AAGCTT 1 cut(s) 1182
HinfI GANTC 8 cut(s) 107, 164, 254, 446, 652, 1004, 1033, 1527
HpaI GTTAAC 1 cut(s) 1113
HpaII CCGG 5 cut(s) 178, 243, 852, 885, 1206
HphI GGTGA 4 cut(s) 604, 661, 1166, 1480
Hpy166II GTNNAC 2 cut(s) 879, 1113
Hpy188III TCNNGA 5 cut(s) 973, 998, 1055, 1135, 1392
Hpy8I GTNNAC 2 cut(s) 879, 1113
Hpy99I CGWCG 6 cut(s) 197, 233, 491, 497, 503, 943
HpyAV CCTTC 9 cut(s) 136, 278, 340, 583, 613, 622, 703, 1145, 1458
HpyCH4III ACNGT 3 cut(s) 869, 943, 1545
HpyCH4IV ACGT 2 cut(s) 1228, 1287
HpyF3I CTNAG 8 cut(s) 293, 510, 531, 611, 689, 981, 1020, 1215
HpySE526I ACGT 2 cut(s) 1228, 1287
Hsp92I GRCGYC 2 cut(s) 195, 492
Hsp92II CATG 3 cut(s) 89, 1075, 1491
HspAI GCGC 4 cut(s) 761, 1024, 1453, 1591
KspAI GTTAAC 1 cut(s) 1113
Kzo9I GATC 8 cut(s) 49, 82, 455, 975, 992, 1137, 1239, 1361
LmnI GCTCC 4 cut(s) 400, 456, 518, 1588
Lsp1109I GCAGC 9 cut(s) 193, 584, 693, 1327, 1337, 1361, 1364, 1381, 1492
LweI GCATC 2 cut(s) 944, 1463
MaeI CTAG 3 cut(s) 1008, 1170, 1193
MaeII ACGT 2 cut(s) 1228, 1287
MaeIII GTNAC 1 cut(s) 905
MalI GATC 8 cut(s) 51, 84, 457, 977, 994, 1139, 1241, 1363
MboI GATC 8 cut(s) 49, 82, 455, 975, 992, 1137, 1239, 1361
MflI RGATCY 3 cut(s) 49, 992, 1361
MhlI GDGCHC 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 1486
MluCI AATT 6 cut(s) 219, 237, 270, 323, 1059, 1259
MluNI TGGCCA 1 cut(s) 1486
MlyI GAGTC 5 cut(s) 116, 173, 248, 661, 1042
MmeI TCCRAC 3 cut(s) 211, 378, 615
Mox20I TGGCCA 1 cut(s) 1486
Mph1103I ATGCAT 1 cut(s) 1478
MscI TGGCCA 1 cut(s) 1486
MseI TTAA 1 cut(s) 1112
Msp20I TGGCCA 1 cut(s) 1486
MspA1I CMGCKG 2 cut(s) 1372, 1581
MspI CCGG 5 cut(s) 178, 243, 852, 885, 1206
MspR9I CCNGG 4 cut(s) 200, 443, 853, 1207
MvaI CCWGG 2 cut(s) 200, 443
MvnI CGCG 1 cut(s) 264
NciI CCSGG 2 cut(s) 853, 1207
NcoI CCATGG 1 cut(s) 1487
NdeI CATATG 1 cut(s) 1478
NdeII GATC 8 cut(s) 49, 82, 455, 975, 992, 1137, 1239, 1361
NlaIII CATG 3 cut(s) 89, 1075, 1491
NmeAIII GCCGAG 2 cut(s) 124, 238
NmuCI GTSAC 1 cut(s) 905
NsiI ATGCAT 1 cut(s) 1478
NspI RCATGY 1 cut(s) 1075
PaeR7I CTCGAG 2 cut(s) 104, 971
PcsI WCGNNNNNNNCGW 6 cut(s) 102, 350, 455, 483, 495, 584
PfeI GAWTC 3 cut(s) 446, 1004, 1527
PflFI GACNNNGTC 1 cut(s) 491
Ple19I CGATCG 1 cut(s) 458
PleI GAGTC 5 cut(s) 115, 172, 248, 660, 1041
PpsI GAGTC 5 cut(s) 115, 172, 248, 660, 1041
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 198, 441
PspGI CCWGG 2 cut(s) 198, 441
PspPI GGNCC 2 cut(s) 44, 1532
PspXI VCTCGAGB 1 cut(s) 104
PstI CTGCAG 1 cut(s) 1371
PstNI CAGNNNCTG 3 cut(s) 133, 841, 1019
PsuI RGATCY 3 cut(s) 49, 992, 1361
PsyI GACNNNGTC 1 cut(s) 491
PvuI CGATCG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 1372
RsaI GTAC 1 cut(s) 1079
RsaNI GTAC 1 cut(s) 1078
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 1112
Sau3AI GATC 8 cut(s) 49, 82, 455, 975, 992, 1137, 1239, 1361
Sau96I GGNCC 2 cut(s) 44, 1532
SchI GAGTC 5 cut(s) 116, 173, 248, 661, 1042
ScrFI CCNGG 4 cut(s) 200, 443, 853, 1207
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 2 cut(s) 944, 1463
SfcI CTRYAG 3 cut(s) 12, 1367, 1576
Sfr274I CTCGAG 2 cut(s) 104, 971
SlaI CTCGAG 2 cut(s) 104, 971
SmlI CTYRAG 4 cut(s) 104, 404, 971, 1053
SmoI CTYRAG 4 cut(s) 104, 404, 971, 1053
Sse9I AATT 6 cut(s) 219, 237, 270, 323, 1059, 1259
SspMI CTAG 3 cut(s) 1008, 1170, 1193
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 4 cut(s) 198, 441, 851, 1205
StyI CCWWGG 2 cut(s) 462, 1487
TaaI ACNGT 3 cut(s) 869, 943, 1545
TaiI ACGT 2 cut(s) 1231, 1290
TaqI TCGA 8 cut(s) 105, 140, 282, 458, 486, 938, 972, 1140
TasI AATT 6 cut(s) 219, 237, 270, 323, 1059, 1259
TatI WGTACW 1 cut(s) 1077
TauI GCSGC 6 cut(s) 149, 152, 267, 557, 568, 970
TfiI GAWTC 3 cut(s) 446, 1004, 1527
Tru1I TTAA 1 cut(s) 1112
Tru9I TTAA 1 cut(s) 1112
TscAI CASTG 2 cut(s) 1024, 1519
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 9 cut(s) 181, 572, 681, 1325, 1340, 1349, 1352, 1369, 1505
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 2 cut(s) 318, 971
TspGWI ACGGA 1 cut(s) 1055
TspRI CASTG 2 cut(s) 1024, 1519
Tth111I GACNNNGTC 1 cut(s) 491
XapI RAATTY 3 cut(s) 237, 270, 1059
XceI RCATGY 1 cut(s) 1075
XhoI CTCGAG 2 cut(s) 104, 971
XmiI GTMKAC 1 cut(s) 878
XspI CTAG 3 cut(s) 1008, 1170, 1193
Zsp2I ATGCAT 1 cut(s) 1478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.