Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005360

Physical Location & Seq

Genomic Coordinates Reverse (-)

66324171 .. 66327120

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG396000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAACCGAAACCGAAATCAACGGCCCAGATTCCACACAAACCTCCGATCATGATCTCCTCCGCGCCGAGCTCGACTCCCTCCGCCGGTCTCACCGGAGCCTCCTACAGAAGACGGCGGCGATGGAGGAAGACTTCAACCGCGTCCAGAGCCAGCGAGACGAGGCGGCGGCTCGCAACGCCGAGTTGACGAGACTCGTCGGAGAAGTTTCCGGCGAGAGGGACGCTCTAAGGGAAGAGCTTCGCAAGGTCGAAGCTGTGGAGAGAGAGAAGGAAGACGAGTATGTGATGAAAATCGATGAGGAGGTGAGGAGGAAGAAGAGTCTGGAAAGTGAGGTTCGAGTTTGTAAGGAGAGAATTGAGAGGTTGGAGATTGAGAGGAGAGAAAGAGATGAGTTTTTGATCAAGTGCTTGGATTCGCTCCGGCCGATCGAGAAGGAGTTGATCGGGATTATTGAAGGAGTCTGTGACGAAGAAGATGACAAAGAAATAGTTGAGATTGAGAAGGGGGCAACGAATGTGGGGGGAGGTGAAGCCGAATTGGACCAGCAATCGAGGGGAGTATGGGAGGAGATCAAGACTATCAAGAGGCTAGTGGAGATAGCCGAAGAGAAAGTGGATGATTATAAGGAATTGAGGCATAACGAGAGGAGGCAATTGGGGAACAGTGTGGTGAGTTTGACAGAGGAGAATAGGGATATCAGCACATTGCTGAGGATTGCTTTGGTGGAGAAGGAGGCTGTGGAGAAGAGGTTGAAGGGGAGCGGTGAGACAAAGAGGGTGGCCATTTTGCAGAGAGTTGGATTCAGTCCGTTCGGGTTTTTGATGGGAAGTGGAGGCAATGAGCAGTCATTGGAGGCTTCCGGGGCTAAATTGGATGGAGCTAAATTGGAAGGAATGGGGTCTGGTGCGAGTTACAAGTCGGATGGCAGTGAGTGTGAAGAGGAGGTTGTAAGTCTGGCATCTACTGTAGAGAAGATAATGAAGAACCTGCGCCTGGAAATCACTCAATTGAGAAGATCTTTGGACGACTCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

39.28

Weight (kDa)

4.87

Isoelectric Point (pI)

63.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49055
fragaria_vesca	FvH4_7g29830 FvH4_7g29830 FvH4_7g29830 FvH4_7g29830 FvH4_7g29830
malus_domestica	MD01G1204900.v1.1 MD07G1273400.v1.1
prunus_persica	Prupe.2G297300_v2.0.a1
pyrus_communis	pycom01g21450 pycom07g25000
rosa_chinensis	RchiOBHm_Chr1g0377801
rosa_laevigata	RLG00000026497
rosa_multiflora	Rmu_co8376285.1_g000001 Rmu_sc0004824.1_g000002 Rmu_sc0036419.1_g000001 Rmu_sc0040831.1_g000001 Rmu_sc0041379.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029020 Rroxscaffold_4G00281050
rosa_rugosa	Rorug01G0405200
rosa_samantha	Rh1AG427200 Rh1BG382100 Rh1CG396000 Rh1DG413100 Rh5BG351000 Rh5CG377200 Rh5DG364900
rosa_wichuraiana	Rw1G037140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	999
AccBSI	CCGCTC	1 cut(s)	765
AccII	CGCG	2 cut(s)	66, 144
AciI	CCGC	7 cut(s)	64, 85, 119, 142, 167, 170, 765
AcoI	YGGCCR	2 cut(s)	425, 783
AfiI	CCNNNNNNNGG	3 cut(s)	87, 219, 997
AgsI	TTSAA	3 cut(s)	139, 458, 757
AjnI	CCWGG	1 cut(s)	996
AluBI	AGCT	4 cut(s)	73, 241, 257, 884
AluI	AGCT	4 cut(s)	73, 241, 257, 884
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	4 cut(s)	96, 153, 187, 764
AoxI	GGCC	3 cut(s)	25, 425, 783
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	68, 996
AspS9I	GGNCC	2 cut(s)	26, 544
AsuC2I	CCSGG	1 cut(s)	865
AsuHPI	GGTGA	5 cut(s)	86, 319, 542, 685, 779
AvaII	GGWCC	1 cut(s)	544
BalI	TGGCCA	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	3 cut(s)	119, 138, 282
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	713
BccI	CCATC	4 cut(s)	118, 820, 872, 920
BceAI	ACGGC	2 cut(s)	40, 132
BciT130I	CCWGG	1 cut(s)	998
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	865
BcoDI	GTCTC	4 cut(s)	96, 153, 187, 764
BfaI	CTAG	2 cut(s)	593, 1035
BfmI	CTRYAG	2 cut(s)	107, 969
BfuAI	ACCTGC	1 cut(s)	999
BglII	AGATCT	1 cut(s)	1019
BisI	GCNGC	3 cut(s)	120, 168, 171
BlsI	GCNGC	3 cut(s)	121, 169, 172
Bme1390I	CCNGG	2 cut(s)	865, 998
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	26, 544
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	865, 998
BmsI	GCATC	1 cut(s)	971
BpiI	GAAGAC	3 cut(s)	119, 138, 282
BplI	GAGNNNNNCTC	4 cut(s)	62, 94, 211, 243
Bpu10I	CCTNAGC	1 cut(s)	713
BpuMI	CCSGG	1 cut(s)	865
Bsa29I	ATCGAT	1 cut(s)	297
BsaBI	GATNNNNATC	2 cut(s)	54, 293
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	864
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 219, 997
Bse118I	RCCGGY	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	707, 847
Bse8I	GATNNNNATC	2 cut(s)	54, 293
BseBI	CCWGG	1 cut(s)	998
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	864
BseGI	GGATG	3 cut(s)	625, 883, 931
BseJI	GATNNNNATC	2 cut(s)	54, 293
BseLI	CCNNNNNNNGG	3 cut(s)	87, 219, 997
BseMI	GCAATG	2 cut(s)	707, 847
BseMII	CTCAG	1 cut(s)	704
BseRI	GAGGAG	8 cut(s)	50, 317, 325, 394, 584, 664, 701, 959
BseX3I	CGGCCG	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	66, 144
Bsh1285I	CGRYCG	2 cut(s)	428, 432
BshFI	GGCC	3 cut(s)	27, 427, 785
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	2 cut(s)	428, 432
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	5 cut(s)	88, 97, 213, 424, 864
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	87, 219, 997
BsmAI	GTCTC	4 cut(s)	96, 153, 187, 764
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	27, 427, 785
Bso31I	GGTCTC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	7 cut(s)	49, 55, 402, 429, 444, 573, 1019
BspACI	CCGC	7 cut(s)	64, 85, 119, 142, 167, 170, 765
BspANI	GGCC	3 cut(s)	27, 427, 785
BspCNI	CTCAG	1 cut(s)	705
BspDI	ATCGAT	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	66, 144
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	999
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	765
BsrDI	GCAATG	2 cut(s)	707, 847
BsrFI	RCCGGY	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	7 cut(s)	49, 55, 402, 429, 444, 573, 1019
Bst2UI	CCWGG	1 cut(s)	998
Bst4CI	ACNGT	2 cut(s)	668, 970
Bst6I	CTCTTC	5 cut(s)	231, 314, 603, 743, 936
BstC8I	GCNNGC	2 cut(s)	155, 175
BstDEI	CTNAG	2 cut(s)	230, 713
BstF5I	GGATG	3 cut(s)	625, 883, 931
BstFNI	CGCG	2 cut(s)	66, 144
BstHHI	GCGC	2 cut(s)	68, 996
BstKTI	GATC	7 cut(s)	52, 58, 405, 432, 447, 576, 1022
BstMAI	GTCTC	4 cut(s)	96, 153, 187, 764
BstMBI	GATC	7 cut(s)	49, 55, 402, 429, 444, 573, 1019
BstMCI	CGRYCG	2 cut(s)	428, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 179, 866
BstNI	CCWGG	1 cut(s)	998
BstSCI	CCNGG	2 cut(s)	863, 996
BstSFI	CTRYAG	2 cut(s)	107, 969
BstUI	CGCG	2 cut(s)	66, 144
BstV2I	GAAGAC	3 cut(s)	119, 138, 282
BstX2I	RGATCY	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	1019
BstZI	CGGCCG	1 cut(s)	425
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	27, 427, 785
BsuTUI	ATCGAT	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	625, 883, 931
BtsI	GCAGTG	1 cut(s)	937
BtsIMutI	CAGTG	2 cut(s)	673, 937
BveI	ACCTGC	1 cut(s)	999
Cac8I	GCNNGC	2 cut(s)	155, 175
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	2 cut(s)	68, 996
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	26, 544
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	2 cut(s)	133, 233
CspCI	CAANNNNNGTGG	4 cut(s)	501, 536, 762, 797
CviAII	CATG	1 cut(s)	53
DdeI	CTNAG	2 cut(s)	230, 713
DpnI	GATC	7 cut(s)	51, 57, 404, 431, 446, 575, 1021
DpnII	GATC	7 cut(s)	49, 55, 402, 429, 444, 573, 1019
EaeI	YGGCCR	2 cut(s)	425, 783
EagI	CGGCCG	1 cut(s)	425
Eam1104I	CTCTTC	5 cut(s)	231, 314, 603, 743, 936
EarI	CTCTTC	5 cut(s)	231, 314, 603, 743, 936
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	544
Eco52I	CGGCCG	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	996
EcoRV	GATATC	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	1 cut(s)	56
FaiI	YATR	5 cut(s)	54, 285, 565, 627, 642
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	120, 168, 171
FokI	GGATG	3 cut(s)	632, 890, 938
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	3 cut(s)	120, 168, 171
FspBI	CTAG	2 cut(s)	593, 1035
GlaI	GCGC	2 cut(s)	67, 995
GluI	GCNGC	3 cut(s)	120, 168, 171
HaeIII	GGCC	3 cut(s)	27, 427, 785
HapII	CCGG	5 cut(s)	88, 97, 213, 424, 864
HgaI	GACGC	2 cut(s)	133, 233
HhaI	GCGC	2 cut(s)	68, 996
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	66, 994
HinP1I	GCGC	2 cut(s)	66, 994
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	8 cut(s)	32, 77, 195, 322, 416, 462, 804, 1031
HpaII	CCGG	5 cut(s)	88, 97, 213, 424, 864
HphI	GGTGA	5 cut(s)	86, 319, 542, 685, 779
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	3 cut(s)	49, 203, 925
Hpy188III	TCNNGA	7 cut(s)	53, 148, 326, 433, 448, 577, 586
Hpy8I	GTNNAC	1 cut(s)	189
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	7 cut(s)	265, 430, 452, 499, 727, 751, 887
HpyCH4III	ACNGT	2 cut(s)	668, 970
HpyCH4V	TGCA	1 cut(s)	793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 179, 866
HpyF3I	CTNAG	2 cut(s)	230, 713
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	66, 994
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	7 cut(s)	49, 55, 402, 429, 444, 573, 1019
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	4 cut(s)	99, 426, 762, 881
LweI	GCATC	1 cut(s)	971
MaeI	CTAG	2 cut(s)	593, 1035
MaeIII	GTNAC	2 cut(s)	467, 914
MalI	GATC	7 cut(s)	51, 57, 404, 431, 446, 575, 1021
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	7 cut(s)	49, 55, 402, 429, 444, 573, 1019
MfeI	CAATTG	2 cut(s)	656, 1010
MflI	RGATCY	1 cut(s)	1019
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	7 cut(s)	357, 539, 632, 656, 872, 887, 1010
MluNI	TGGCCA	1 cut(s)	785
MlyI	GAGTC	5 cut(s)	71, 189, 331, 471, 1025
MmeI	TCCRAC	4 cut(s)	181, 348, 781, 903
Mox20I	TGGCCA	1 cut(s)	785
MroXI	GAANNNNTTC	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	785
MspI	CCGG	5 cut(s)	88, 97, 213, 424, 864
MspR9I	CCNGG	2 cut(s)	865, 998
MunI	CAATTG	2 cut(s)	656, 1010
MvaI	CCWGG	1 cut(s)	998
MvnI	CGCG	2 cut(s)	66, 144
MwoI	GCNNNNNNNGC	3 cut(s)	150, 179, 866
NciI	CCSGG	1 cut(s)	865
NdeII	GATC	7 cut(s)	49, 55, 402, 429, 444, 573, 1019
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	101
NmeAIII	GCCGAG	2 cut(s)	94, 208
NmuCI	GTSAC	1 cut(s)	467
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	32, 416, 804
PkrI	GCNGC	3 cut(s)	121, 169, 172
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	5 cut(s)	71, 189, 330, 470, 1025
PpsI	GAGTC	5 cut(s)	71, 189, 330, 470, 1025
PsiI	TTATAA	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	996
PspGI	CCWGG	1 cut(s)	996
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	26, 544
PsuI	RGATCY	1 cut(s)	1019
PvuI	CGATCG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	231
SatI	GCNGC	3 cut(s)	120, 168, 171
Sau3AI	GATC	7 cut(s)	49, 55, 402, 429, 444, 573, 1019
Sau96I	GGNCC	2 cut(s)	26, 544
SchI	GAGTC	5 cut(s)	71, 189, 331, 471, 1025
ScrFI	CCNGG	2 cut(s)	865, 998
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	971
SfcI	CTRYAG	2 cut(s)	107, 969
SinI	GGWCC	1 cut(s)	544
Sse9I	AATT	7 cut(s)	357, 539, 632, 656, 872, 887, 1010
SsiI	CCGC	7 cut(s)	64, 85, 119, 142, 167, 170, 765
SspMI	CTAG	2 cut(s)	593, 1035
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	863, 996
TaaI	ACNGT	2 cut(s)	668, 970
TaqI	TCGA	6 cut(s)	75, 252, 297, 340, 432, 554
TasI	AATT	7 cut(s)	357, 539, 632, 656, 872, 887, 1010
TauI	GCSGC	3 cut(s)	122, 170, 173
TfiI	GAWTC	3 cut(s)	32, 416, 804
TscAI	CASTG	2 cut(s)	673, 937
TseFI	GTSAC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	305, 998
TspGWI	ACGGA	1 cut(s)	801
TspRI	CASTG	2 cut(s)	673, 937
VpaK11BI	GGWCC	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	2 cut(s)	593, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.