AT3G49080

Belongs to the universal ribosomal protein uS9 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
18194154 .. 18196784
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49080.1

Sequence Viewer

Length: 1293 bp
ATGCTCTCTCGTTTATTCCTTAGACATTCGAATCTCCGTTTCGTAACCCTAGTTTCATCGAAATCAAATTCTCAGATCTTCTCTTCGTTTATTCGTCCGCTTTCGACTAACAGTAGCGGCGGCGGAGGAAATGGTGACGGGAATGGTCGTAATCGGAATGATGTTCCGTGGAGTTTCACTGGAGTAAACGATGATAAGTCTGGACCTTTCTCTTCCGATGATTCTTTTGGTTCTTCTGGAGTTGCAGGATCTGGTTTACCTGGTGGAGAGGGGAAATGGCCGGAGGAGCCTAAGAGATGGAATATAAAGGAGGAAGAGGAAAAAGTTGTGTTTGATACTGGTGGTGAAGTAGGTCAAGGGATTGAGACTAGTCGCGAGAGGAGGGGTAATGAATGGGAGGAGACTAAGAGATGGGATATGAAGGAGGGAGAGGAGAAAGTTGTGTTTGGTGGCGGAGGAGATGAGGTGGATGGGTTTGGAATCAGGGGAGAGGTGAAATCTAATGAATGGGATGTGTCAAAGCCATGGAATTTGAAAGAGGAAGAGGAGGGAGTTGTGTTTGATACTGGTGGTGAAGTGCCGTTTAGCTTTGAGAATAGCTTGGAAATGGCGGAGGAAGAGCGTGTGAAGAAGGAGTTGATTGAGAAGGAAGAGAAGGAGCTTCTTGAGGTTATCAAGGGTCCTGATCGAGCATTTGGAGACCTTATTGCTAAGTCAGGTATAACAGATGAAATGCTAGATAGTTTAATAGCCTTGAAAGATTTCCAAGGGGTCGAAGGATTACCTCCTCTGACTGAGATTGAAAACCTGCGTCGTGAGAAAAGTTCAAAGAAGTCATCAAGAGCTGAGATAGAACTCCAGATGCAAGAGGACATTGCCAAAGCACGGGTGAGACAAGTTGACGAAACAGGTAGAGCCTATGGAACTGGAAGAAGAAAATGTAGCATTGCACGTGTTTGGATTCAACCTGGGGAAGGAAAATTTCAAGTTAATGAAAAAGAATTTGATGTCTATTTCCCTATGCTTGATCATCGCGCTGCTCTTCTACGCCCACTTGCTGAAACCAAAACCTTGGGTCGTTGGGATATTAAGTGCACTGTTAAAGGCGGTGGTACTACAGGTCAAGTCGGAGCTATTCAATTGGGTATCAGCAGGGCACTGCAAAACTGGGAACCAGATATGCGGACATCACTTCGAGCTGCTGGTTTCTTGACAAGAGACTCTCGAGTTGTGGAAAGAAAGAAACCTGGAAAAGCCAAGGCAAGAAAGAGCTTCCAATGGGTCAAACGTTGA

Protein Analysis

430

Amino Acids

47.99

Weight (kDa)

5.64

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 310 - 430 1e-44 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013162)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 816
AccII CGCG 2 cut(s) 375, 1035
AciI CCGC 8 cut(s) 98, 117, 120, 123, 453, 611, 1107, 1183
AclI AACGTT 1 cut(s) 1288
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 4 cut(s) 67, 529, 980, 1001
AcvI CACGTG 1 cut(s) 953
AfaI GTAC 1 cut(s) 1114
AfiI CCNNNNNNNGG 2 cut(s) 885, 974
AflIII ACRYGT 1 cut(s) 952
AgsI TTSAA 7 cut(s) 535, 757, 803, 828, 965, 986, 1139
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 3 cut(s) 259, 967, 1246
AluBI AGCT 7 cut(s) 588, 600, 661, 845, 1133, 1199, 1272
AluI AGCT 7 cut(s) 588, 600, 661, 845, 1133, 1199, 1272
Alw21I GWGCWC 1 cut(s) 1097
Alw26I GTCTC 5 cut(s) 359, 395, 693, 886, 1212
Alw44I GTGCAC 1 cut(s) 1093
AlwI GGATC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 1224
AoxI GGCC 1 cut(s) 278
ApaLI GTGCAC 1 cut(s) 1093
ApeKI GCWGC 2 cut(s) 1037, 1199
ApoI RAATTY 4 cut(s) 67, 529, 980, 1001
Asp700I GAANNNNTTC 1 cut(s) 761
AspLEI GCGC 1 cut(s) 1037
AspS9I GGNCC 2 cut(s) 203, 680
AsuHPI GGTGA 5 cut(s) 146, 356, 505, 584, 901
AsuII TTCGAA 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 1224
AvaII GGWCC 2 cut(s) 203, 680
BaeGI GKGCMC 2 cut(s) 1097, 1159
BbrPI CACGTG 1 cut(s) 953
Bbv12I GWGCWC 1 cut(s) 1097
BbvI GCAGC 2 cut(s) 1024, 1186
BccI CCATC 3 cut(s) 291, 405, 464
BceAI ACGGC 1 cut(s) 565
BciT130I CCWGG 3 cut(s) 261, 969, 1248
BclI TGATCA 1 cut(s) 1027
BcoDI GTCTC 5 cut(s) 359, 395, 693, 886, 1212
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 3 cut(s) 50, 369, 737
BfmI CTRYAG 1 cut(s) 1116
BfuAI ACCTGC 1 cut(s) 816
BglII AGATCT 1 cut(s) 75
BisI GCNGC 4 cut(s) 118, 121, 1038, 1200
BlsI GCNGC 4 cut(s) 119, 122, 1039, 1201
Bme1390I CCNGG 3 cut(s) 261, 969, 1248
Bme18I GGWCC 2 cut(s) 203, 680
BmeT110I CYCGRG 1 cut(s) 1224
BmgT120I GGNCC 2 cut(s) 203, 680
BmiI GGNNCC 3 cut(s) 288, 681, 1173
BmrFI CCNGG 3 cut(s) 261, 969, 1248
BmrI ACTGGG 1 cut(s) 1177
BmsI GCATC 1 cut(s) 852
BmuI ACTGGG 1 cut(s) 1177
BpmI CTGGAG 3 cut(s) 201, 258, 842
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 686
BsaAI YACGTR 1 cut(s) 953
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 6 cut(s) 167, 524, 766, 968, 1071, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 885, 974
Bse1I ACTGG 5 cut(s) 184, 343, 571, 931, 1172
Bse3DI GCAATG 2 cut(s) 873, 945
BseBI CCWGG 3 cut(s) 261, 969, 1248
BseDI CCNNGG 6 cut(s) 167, 524, 766, 968, 1071, 1257
BseGI GGATG 2 cut(s) 475, 517
BseLI CCNNNNNNNGG 2 cut(s) 885, 974
BseMI GCAATG 2 cut(s) 873, 945
BseMII CTCAG 3 cut(s) 86, 786, 837
BseNI ACTGG 5 cut(s) 184, 343, 571, 931, 1172
BseRI GAGGAG 7 cut(s) 299, 394, 413, 446, 471, 560, 777
BseSI GKGCMC 2 cut(s) 1097, 1159
BseXI GCAGC 2 cut(s) 1024, 1186
Bsh1236I CGCG 2 cut(s) 375, 1035
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 1097
BsiHKCI CYCGRG 1 cut(s) 1224
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 885, 974
BsmAI GTCTC 5 cut(s) 359, 395, 693, 886, 1212
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 693
BsoBI CYCGRG 1 cut(s) 1224
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 1097, 1159
Bsp143I GATC 4 cut(s) 75, 248, 685, 1027
Bsp19I CCATGG 1 cut(s) 524
Bsp68I TCGCGA 1 cut(s) 375
BspACI CCGC 8 cut(s) 98, 117, 120, 123, 453, 611, 1107, 1183
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 3 cut(s) 85, 787, 838
BspFNI CGCG 2 cut(s) 375, 1035
BspLI GGNNCC 3 cut(s) 288, 681, 1173
BspMI ACCTGC 1 cut(s) 816
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 2 cut(s) 612, 1047
BspT104I TTCGAA 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 693
BsrDI GCAATG 2 cut(s) 873, 945
BsrI ACTGG 5 cut(s) 184, 343, 571, 931, 1172
BssECI CCNNGG 6 cut(s) 167, 524, 766, 968, 1071, 1257
BssMI GATC 4 cut(s) 75, 248, 685, 1027
BssT1I CCWWGG 4 cut(s) 524, 766, 1071, 1257
Bst2UI CCWGG 3 cut(s) 261, 969, 1248
Bst4CI ACNGT 2 cut(s) 113, 1099
Bst6I CTCTTC 7 cut(s) 88, 217, 309, 537, 612, 645, 1047
BstBAI YACGTR 1 cut(s) 953
BstBI TTCGAA 1 cut(s) 29
BstDEI CTNAG 7 cut(s) 20, 72, 291, 405, 711, 795, 846
BstDSI CCRYGG 2 cut(s) 167, 524
BstENI CCTNNNNNAGG 1 cut(s) 972
BstF5I GGATG 2 cut(s) 475, 517
BstFNI CGCG 2 cut(s) 375, 1035
BstHHI GCGC 1 cut(s) 1037
BstKTI GATC 4 cut(s) 78, 251, 688, 1030
BstMAI GTCTC 5 cut(s) 359, 395, 693, 886, 1212
BstMBI GATC 4 cut(s) 75, 248, 685, 1027
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 3 cut(s) 261, 969, 1248
BstSCI CCNGG 3 cut(s) 259, 967, 1246
BstSFI CTRYAG 1 cut(s) 1116
BstSLI GKGCMC 2 cut(s) 1097, 1159
BstUI CGCG 2 cut(s) 375, 1035
BstV1I GCAGC 2 cut(s) 1024, 1186
BstX2I RGATCY 2 cut(s) 75, 248
BstXI CCANNNNNNTGG 1 cut(s) 1072
BstYI RGATCY 2 cut(s) 75, 248
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 2 cut(s) 167, 524
BtgZI GCGATG 1 cut(s) 1016
BtsCI GGATG 2 cut(s) 475, 517
BtsI GCAGTG 1 cut(s) 1157
BtsIMutI CAGTG 3 cut(s) 177, 1095, 1157
BtuMI TCGCGA 1 cut(s) 375
BveI ACCTGC 1 cut(s) 816
CaiI CAGNNNCTG 1 cut(s) 251
CfoI GCGC 1 cut(s) 1037
Cfr13I GGNCC 2 cut(s) 203, 680
CseI GACGC 1 cut(s) 800
CsiI ACCWGGT 1 cut(s) 259
Csp6I GTAC 1 cut(s) 1113
CviAII CATG 1 cut(s) 525
CviQI GTAC 1 cut(s) 1113
DdeI CTNAG 7 cut(s) 20, 72, 291, 405, 711, 795, 846
DpnI GATC 4 cut(s) 77, 250, 687, 1029
DpnII GATC 4 cut(s) 75, 248, 685, 1027
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 7 cut(s) 88, 217, 309, 537, 612, 645, 1047
EarI CTCTTC 7 cut(s) 88, 217, 309, 537, 612, 645, 1047
EciI GGCGGA 3 cut(s) 138, 468, 626
Eco130I CCWWGG 4 cut(s) 524, 766, 1071, 1257
Eco31I GGTCTC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 203, 680
Eco72I CACGTG 1 cut(s) 953
Eco88I CYCGRG 1 cut(s) 1224
EcoNI CCTNNNNNAGG 1 cut(s) 972
EcoO109I RGGNCCY 1 cut(s) 680
EcoRII CCWGG 3 cut(s) 259, 967, 1246
EcoT14I CCWWGG 4 cut(s) 524, 766, 1071, 1257
ErhI CCWWGG 4 cut(s) 524, 766, 1071, 1257
FaeI CATG 1 cut(s) 528
FaiI YATR 7 cut(s) 305, 419, 526, 722, 921, 1022, 1181
FatI CATG 1 cut(s) 524
FbaI TGATCA 1 cut(s) 1027
Fnu4HI GCNGC 4 cut(s) 118, 121, 1038, 1200
FokI GGATG 2 cut(s) 482, 524
Fsp4HI GCNGC 4 cut(s) 118, 121, 1038, 1200
FspBI CTAG 3 cut(s) 50, 369, 737
GlaI GCGC 1 cut(s) 1036
GluI GCNGC 4 cut(s) 118, 121, 1038, 1200
GsuI CTGGAG 3 cut(s) 201, 258, 842
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 800
HhaI GCGC 1 cut(s) 1037
Hin1II CATG 1 cut(s) 528
Hin6I GCGC 1 cut(s) 1035
HinP1I GCGC 1 cut(s) 1035
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HinfI GANTC 5 cut(s) 31, 221, 480, 961, 1220
HpaII CCGG 1 cut(s) 281
HphI GGTGA 5 cut(s) 146, 356, 505, 584, 901
Hpy166II GTNNAC 4 cut(s) 187, 257, 901, 1095
Hpy188I TCNGA 5 cut(s) 75, 156, 217, 792, 1130
Hpy8I GTNNAC 4 cut(s) 187, 257, 901, 1095
Hpy99I CGWCG 1 cut(s) 816
HpyAV CCTTC 6 cut(s) 415, 625, 640, 649, 770, 968
HpyCH4III ACNGT 2 cut(s) 113, 1099
HpyCH4IV ACGT 2 cut(s) 952, 1288
HpyCH4V TGCA 5 cut(s) 245, 865, 950, 1095, 1162
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 7 cut(s) 20, 72, 291, 405, 711, 795, 846
HpySE526I ACGT 2 cut(s) 952, 1288
Hsp92II CATG 1 cut(s) 528
HspAI GCGC 1 cut(s) 1035
Ksp22I TGATCA 1 cut(s) 1027
Kzo9I GATC 4 cut(s) 75, 248, 685, 1027
LguI GCTCTTC 2 cut(s) 612, 1047
LmnI GCTCC 3 cut(s) 286, 658, 1130
Lsp1109I GCAGC 2 cut(s) 1024, 1186
LweI GCATC 1 cut(s) 852
MabI ACCWGGT 1 cut(s) 259
MaeI CTAG 3 cut(s) 50, 369, 737
MaeII ACGT 2 cut(s) 952, 1288
MaeIII GTNAC 2 cut(s) 43, 134
MalI GATC 4 cut(s) 77, 250, 687, 1029
MboI GATC 4 cut(s) 75, 248, 685, 1027
MfeI CAATTG 1 cut(s) 1139
MflI RGATCY 2 cut(s) 75, 248
MhlI GDGCHC 2 cut(s) 1097, 1159
MluCI AATT 5 cut(s) 67, 529, 980, 1001, 1139
MlyI GAGTC 1 cut(s) 1214
MmeI TCCRAC 1 cut(s) 1108
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 4 cut(s) 746, 990, 1089, 1101
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 3 cut(s) 261, 969, 1248
MunI CAATTG 1 cut(s) 1139
MvaI CCWGG 3 cut(s) 261, 969, 1248
MvnI CGCG 2 cut(s) 375, 1035
MwoI GCNNNNNNNGC 1 cut(s) 286
NcoI CCATGG 1 cut(s) 524
NdeII GATC 4 cut(s) 75, 248, 685, 1027
NlaIII CATG 1 cut(s) 528
NlaIV GGNNCC 3 cut(s) 288, 681, 1173
NmuCI GTSAC 1 cut(s) 134
NruI TCGCGA 1 cut(s) 375
NspV TTCGAA 1 cut(s) 29
PaeR7I CTCGAG 1 cut(s) 1224
PciSI GCTCTTC 2 cut(s) 612, 1047
PdmI GAANNNNTTC 1 cut(s) 761
PfeI GAWTC 4 cut(s) 31, 221, 480, 961
PkrI GCNGC 4 cut(s) 119, 122, 1039, 1201
PleI GAGTC 1 cut(s) 1214
PmaCI CACGTG 1 cut(s) 953
PmlI CACGTG 1 cut(s) 953
PpsI GAGTC 1 cut(s) 1214
Ppu21I YACGTR 1 cut(s) 953
PpuMI RGGWCCY 1 cut(s) 680
Psp1406I AACGTT 1 cut(s) 1288
Psp5II RGGWCCY 1 cut(s) 680
Psp6I CCWGG 3 cut(s) 259, 967, 1246
PspCI CACGTG 1 cut(s) 953
PspGI CCWGG 3 cut(s) 259, 967, 1246
PspN4I GGNNCC 3 cut(s) 288, 681, 1173
PspPI GGNCC 2 cut(s) 203, 680
PspPPI RGGWCCY 1 cut(s) 680
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 2 cut(s) 75, 248
RruI TCGCGA 1 cut(s) 375
RsaI GTAC 1 cut(s) 1114
RsaNI GTAC 1 cut(s) 1113
SapI GCTCTTC 2 cut(s) 612, 1047
SaqAI TTAA 4 cut(s) 746, 990, 1089, 1101
SatI GCNGC 4 cut(s) 118, 121, 1038, 1200
Sau3AI GATC 4 cut(s) 75, 248, 685, 1027
Sau96I GGNCC 2 cut(s) 203, 680
SchI GAGTC 1 cut(s) 1214
ScrFI CCNGG 3 cut(s) 261, 969, 1248
SduI GDGCHC 2 cut(s) 1097, 1159
SexAI ACCWGGT 1 cut(s) 259
SfaNI GCATC 1 cut(s) 852
SfcI CTRYAG 1 cut(s) 1116
Sfr274I CTCGAG 1 cut(s) 1224
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 2 cut(s) 203, 680
SlaI CTCGAG 1 cut(s) 1224
SmlI CTYRAG 2 cut(s) 665, 1224
SmoI CTYRAG 2 cut(s) 665, 1224
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 5 cut(s) 67, 529, 980, 1001, 1139
SsiI CCGC 8 cut(s) 98, 117, 120, 123, 453, 611, 1107, 1183
SspMI CTAG 3 cut(s) 50, 369, 737
StyD4I CCNGG 3 cut(s) 259, 967, 1246
StyI CCWWGG 4 cut(s) 524, 766, 1071, 1257
TaaI ACNGT 2 cut(s) 113, 1099
TaiI ACGT 2 cut(s) 955, 1291
TaqI TCGA 7 cut(s) 29, 59, 104, 688, 774, 1195, 1225
TasI AATT 5 cut(s) 67, 529, 980, 1001, 1139
TauI GCSGC 2 cut(s) 120, 123
TfiI GAWTC 4 cut(s) 31, 221, 480, 961
Tru1I TTAA 4 cut(s) 746, 990, 1089, 1101
Tru9I TTAA 4 cut(s) 746, 990, 1089, 1101
TscAI CASTG 3 cut(s) 184, 1102, 1164
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 1037, 1199
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 6 cut(s) 45, 405, 434, 519, 744, 1008
TspGWI ACGGA 2 cut(s) 26, 156
TspRI CASTG 3 cut(s) 184, 1102, 1164
VneI GTGCAC 1 cut(s) 1093
VpaK11BI GGWCC 2 cut(s) 203, 680
XagI CCTNNNNNAGG 1 cut(s) 972
XapI RAATTY 4 cut(s) 67, 529, 980, 1001
XhoI CTCGAG 1 cut(s) 1224
XmnI GAANNNNTTC 1 cut(s) 761
XspI CTAG 3 cut(s) 50, 369, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.