Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013162

Physical Location & Seq

Genomic Coordinates Reverse (-)

36715187 .. 36716469

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCTCTCTCGTCTTCTACCCAAACCCTCACATTTCTCTCGCCTAACCCTAATCTCCACAAAGTTCCATCCCTTTCCCCAACCCCAAAATCCTCTTTTCGCTACCTTCACTCCAAGGTTCTTCTCCAGTGACGATGGTAAGGGTCCCTCCCAATCAGATGTTTGGAGGCTTTCTCAGGAAACCGATGGAAAGTTTGACCCTTTATTCGGCGAGAGCTCCAGGGACATTTCCGGGATTGCAGAAGTTGAGTCCAGCGAGGCCGATTCCGACTGGTTGAAGGGGAAAGGAGGCGAGGAGTGGGGTACATCTCAGGAGTTTAAGCTGTGGAGCTTGGGAGAGGAGAAGAGTGACTTGTTCGATATCGGAGAGGGTGTACAGACTGTTACTGCCATTGACAGTGAGACAAGTAGAGAGGAGATTGAAAAGGCTGAACAGGCTAAGAGGCTTGAGAAAGAGGAGCGGGAGCTTACTGCTGTTCTCAAAGGTCCGAATCGTGCCTTTGGTGACTTTATTGGTGCATCTGGAATCACAGATGGAATGCTTGACACTTTGATTTCATTGAAGGATTTTCAAGGGATAAAGGGATTGCCCCCTCTTTCAGAGATTGAAGACATTCGTTATGAGAAAAATACCAGAAAATCCTCGAGAGCTGAAATAGAGCGCCAGAAACAGGAGGAAGTTGCCAAAGCAAGAGTGAGAACAGTAGACGACAAGGGGAGAGCTTATGGAACAGGAAGAAGGAAATGTAGTGTAGCATGTGTCTGGATTCATCCTGGTAATGGTAAATTCACAATTAATGATAAACAATTTGAGGCCTATTTTCCAATGCTTGATCGATCGTGCTGCTCTCCTCCGACCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009987 GO:0010467 GO:0015935 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030154 GO:0030490 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

289

Amino Acids

32.31

Weight (kDa)

5.3

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	245 - 279	6.5e-07	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49080
fragaria_vesca	FvH4_6g32580
malus_domestica	MD09G1200300.v1.1 MD15G1412900.v1.1
prunus_persica	Prupe.3G056900_v2.0.a1
pyrus_communis	pycom09g11790 pycom15g36770
rosa_chinensis	RchiOBHm_Chr2g0141031
rosa_laevigata	RLG00000019909
rosa_multiflora	Rmu_sc0004769.1_g000015 Rmu_sc0012897.1_g000007
rosa_roxburghii	Rroxscaffold_2G00104270
rosa_rugosa	Rorug02G0366200
rosa_samantha	Rh2AG417600 Rh2BG427500 Rh2CG403900 Rh2DG437000
rosa_wichuraiana	Rw2G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	460
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	785
AfaI	GTAC	2 cut(s)	304, 375
AfiI	CCNNNNNNNGG	3 cut(s)	206, 670, 779
AgsI	TTSAA	5 cut(s)	277, 422, 562, 572, 608
AjnI	CCWGG	2 cut(s)	218, 772
AluBI	AGCT	6 cut(s)	216, 322, 330, 466, 650, 722
AluI	AGCT	6 cut(s)	216, 322, 330, 466, 650, 722
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	395
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	2 cut(s)	258, 813
ApeKI	GCWGC	1 cut(s)	843
ApoI	RAATTY	1 cut(s)	785
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AseI	ATTAAT	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	143, 485
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	2 cut(s)	143, 485
BanII	GRGCYC	1 cut(s)	218
BbsI	GAAGAC	2 cut(s)	5, 615
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	830
BccI	CCATC	4 cut(s)	75, 128, 179, 527
BcgI	CGANNNNNNTGC	2 cut(s)	825, 859
BciT130I	CCWGG	2 cut(s)	220, 774
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	664
BisI	GCNGC	1 cut(s)	844
BlsI	GCNGC	1 cut(s)	845
Bme1390I	CCNGG	3 cut(s)	220, 232, 774
Bme18I	GGWCC	2 cut(s)	143, 485
BmeT110I	CYCGRG	1 cut(s)	643
BmgT120I	GGNCC	2 cut(s)	143, 485
BmiI	GGNNCC	2 cut(s)	144, 145
BmrFI	CCNGG	3 cut(s)	220, 232, 774
BmsI	GCATC	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	5, 615
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	2 cut(s)	109, 202
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	835
BsaJI	CCNNGG	2 cut(s)	113, 219
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 357, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 670, 779
Bse1I	ACTGG	2 cut(s)	126, 275
BseBI	CCWGG	2 cut(s)	220, 774
BseCI	ATCGAT	1 cut(s)	835
BseDI	CCNNGG	2 cut(s)	113, 219
BseGI	GGATG	2 cut(s)	67, 769
BseLI	CCNNNNNNNGG	3 cut(s)	206, 670, 779
BseMII	CTCAG	2 cut(s)	188, 323
BseNI	ACTGG	2 cut(s)	126, 275
BseRI	GAGGAG	5 cut(s)	308, 353, 428, 470, 840
BseXI	GCAGC	1 cut(s)	830
Bsh1285I	CGRYCG	1 cut(s)	839
BshFI	GGCC	2 cut(s)	260, 815
BshVI	ATCGAT	1 cut(s)	835
BsiEI	CGRYCG	1 cut(s)	839
BsiHKAI	GWGCWC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	2 cut(s)	129, 236
BslI	CCNNNNNNNGG	3 cut(s)	206, 670, 779
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	129, 236
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	260, 815
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	832, 836
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	2 cut(s)	260, 815
BspCNI	CTCAG	2 cut(s)	187, 322
BspDI	ATCGAT	1 cut(s)	835
BspLI	GGNNCC	2 cut(s)	144, 145
BsrBI	CCGCTC	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	126, 275
BssECI	CCNNGG	2 cut(s)	113, 219
BssMI	GATC	2 cut(s)	832, 836
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	2 cut(s)	220, 774
Bst4CI	ACNGT	3 cut(s)	382, 398, 703
Bst6I	CTCTTC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	174, 309, 438
BstF5I	GGATG	2 cut(s)	67, 769
BstH2I	RGCGCY	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	2 cut(s)	835, 839
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	832, 836
BstMCI	CGRYCG	1 cut(s)	839
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	2 cut(s)	220, 774
BstNSI	RCATGY	1 cut(s)	759
BstSCI	CCNGG	3 cut(s)	218, 230, 772
BstV1I	GCAGC	1 cut(s)	830
BstV2I	GAAGAC	2 cut(s)	5, 615
Bsu15I	ATCGAT	1 cut(s)	835
BsuRI	GGCC	2 cut(s)	260, 815
BsuTUI	ATCGAT	1 cut(s)	835
BtsCI	GGATG	2 cut(s)	67, 769
BtsIMutI	CAGTG	2 cut(s)	133, 403
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	143, 485
ClaI	ATCGAT	1 cut(s)	835
Csp6I	GTAC	2 cut(s)	303, 374
CviAII	CATG	1 cut(s)	756
CviQI	GTAC	2 cut(s)	303, 374
DdeI	CTNAG	3 cut(s)	174, 309, 438
DpnI	GATC	2 cut(s)	834, 838
DpnII	GATC	2 cut(s)	832, 836
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Ecl136II	GAGCTC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	815
Eco24I	GRGCYC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	143, 485
Eco53kI	GAGCTC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	643
EcoICRI	GAGCTC	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	218, 772
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	759
FaiI	YATR	3 cut(s)	621, 726, 757
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	2 cut(s)	129, 236
FatI	CATG	1 cut(s)	755
FauI	CCCGC	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	1 cut(s)	844
FokI	GGATG	2 cut(s)	54, 756
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	844
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	1 cut(s)	844
GsuI	CTGGAG	2 cut(s)	109, 202
HaeII	RGCGCY	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	260, 815
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	1 cut(s)	663
Hin1II	CATG	1 cut(s)	759
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HinfI	GANTC	5 cut(s)	248, 263, 490, 525, 766
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	374, 706
Hpy188I	TCNGA	7 cut(s)	157, 268, 365, 489, 601, 855, 866
Hpy188III	TCNNGA	5 cut(s)	176, 311, 522, 645, 763
Hpy8I	GTNNAC	2 cut(s)	374, 706
HpyAV	CCTTC	4 cut(s)	115, 271, 556, 732
HpyCH4III	ACNGT	3 cut(s)	382, 398, 703
HpyCH4V	TGCA	2 cut(s)	239, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	3 cut(s)	174, 309, 438
Hsp92II	CATG	1 cut(s)	759
HspAI	GCGC	1 cut(s)	661
KflI	GGGWCCC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	832, 836
LmnI	GCTCC	4 cut(s)	221, 327, 457, 463
Lsp1109I	GCAGC	1 cut(s)	830
LweI	GCATC	1 cut(s)	527
MaeIII	GTNAC	4 cut(s)	128, 347, 382, 503
MalI	GATC	2 cut(s)	834, 838
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	2 cut(s)	832, 836
MboII	GAAGA	5 cut(s)	5, 112, 355, 620, 747
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	3 cut(s)	785, 792, 806
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	2 cut(s)	318, 795
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	3 cut(s)	220, 232, 774
Mva1269I	GAATGC	1 cut(s)	543
MvaI	CCWGG	2 cut(s)	220, 774
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	832, 836
NlaIII	CATG	1 cut(s)	759
NlaIV	GGNNCC	2 cut(s)	144, 145
NmuCI	GTSAC	3 cut(s)	128, 347, 503
NspI	RCATGY	1 cut(s)	759
PaeR7I	CTCGAG	1 cut(s)	643
PceI	AGGCCT	1 cut(s)	815
PctI	GAATGC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	4 cut(s)	263, 490, 525, 766
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	845
Ple19I	CGATCG	1 cut(s)	839
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	218, 772
PspGI	CCWGG	2 cut(s)	218, 772
PspN4I	GGNNCC	2 cut(s)	144, 145
PspPI	GGNCC	2 cut(s)	143, 485
PspPPI	RGGWCCY	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	839
RsaI	GTAC	2 cut(s)	304, 375
RsaNI	GTAC	2 cut(s)	303, 374
SacI	GAGCTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	318, 795
SatI	GCNGC	1 cut(s)	844
Sau3AI	GATC	2 cut(s)	832, 836
Sau96I	GGNCC	2 cut(s)	143, 485
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	220, 232, 774
SduI	GDGCHC	1 cut(s)	218
SfaNI	GCATC	1 cut(s)	527
Sfr274I	CTCGAG	1 cut(s)	643
SinI	GGWCC	2 cut(s)	143, 485
SlaI	CTCGAG	1 cut(s)	643
SmlI	CTYRAG	2 cut(s)	446, 643
SmoI	CTYRAG	2 cut(s)	446, 643
Sse9I	AATT	3 cut(s)	785, 792, 806
SseBI	AGGCCT	1 cut(s)	815
SsiI	CCGC	1 cut(s)	460
SstI	GAGCTC	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	815
StyD4I	CCNGG	3 cut(s)	218, 230, 772
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	382, 398, 703
TaqI	TCGA	3 cut(s)	357, 644, 835
TasI	AATT	3 cut(s)	785, 792, 806
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	4 cut(s)	263, 490, 525, 766
Tru1I	TTAA	2 cut(s)	318, 795
Tru9I	TTAA	2 cut(s)	318, 795
TscAI	CASTG	2 cut(s)	133, 403
TseFI	GTSAC	3 cut(s)	128, 347, 503
TseI	GCWGC	1 cut(s)	843
Tsp45I	GTSAC	3 cut(s)	128, 347, 503
TspDTI	ATGAA	2 cut(s)	546, 758
TspRI	CASTG	2 cut(s)	133, 403
VpaK11BI	GGWCC	2 cut(s)	143, 485
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	1 cut(s)	785
XceI	RCATGY	1 cut(s)	759
XhoI	CTCGAG	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.