Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013162

Physical Location & Seq

Genomic Coordinates Forward (+)

60328835 .. 60334607

Gene Structure 5773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG427500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCTCTCTCGTCTCCTCCCCAAACCCTCACATTTCTCTCTCCTAACCCGAATCTCCACAAAATTCCACCCATGTCCCCACCCCCAATTCCCCTCCCCTCTCCAAAACCCTACCTTCACCACCTTCCTCCCCAGGTTCTTCTCCGCCGGCGGCGACGGCAACAACGGCCAATCCCCGCCCGACGTCTGGAACCTTTCCAAGGAAACCGATGAGAACTTCGACCCTCTGTTCGGCGAAGGCTCCGGTGACGTCTCCGGGATAGCCGAGGCTGATTCGTGGACCAAATCGACGGGCGGCGATGAGTGGGAGACGGTGCCGGGGTTTAGGCCCTGGAGCTTGGGAGGAGAGGAAGATAAGGGCGACGATTTGTTCCAAGTCGGCGATGGCGTTCAAACTAGGACTAGTGTGGAGAGTGATCAGGAGGATGAGGGTAAGAGGATAGAGGAGGCTAAGAGGCTTGAGAAAGAGGAGAAGGAGCTCACTGCTGTTCTTAAAGGTCCAAATCGTGCATTTGGTGACCTTGTTGCAGCATCTGGAATCACAGATGAAATGCTTGACAGTTTGATTGCATTGAAGGATTTTCGAGGGATAAAGGGATTACCTCCACTACATGAAATAGAAGACATTCGCTATCGGAAAAACACAAGTAAATCTTCAAGAGCTGATATAGAGCGCCAGAAACAGGAGGAAGTTGCCAAAGCAAGAGTGAGACTAGTGGACGACAAGGGAAGAGCTTATGGAACAGGAAGAAGGAAATGCAGTATAGCCCGTGTCTGGATTCAACCTGGTGATGGTAATTTCGTCATCAACGATAAACAGTTTGATGTCTATTTTCCAATGCTTGATCATCGTGCTGCTATCCTTCGACCGTTCTCTGAGACAAAAACTTTGGGCCTTTGGGACATCAATTGCACCGTTCAAGGGGGTGGTCTCTCAGGTAAATCAAAGACCTACGCATCTTATTACGACTTATATGTTATATGGTGTTGTTTGAGACCTCTTTCAACTAGTGTTTCCCTATTTTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009987 GO:0010467 GO:0015935 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030154 GO:0030490 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

343

Amino Acids

38.29

Weight (kDa)

5.46

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	249 - 316	3.2e-17	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49080
fragaria_vesca	FvH4_6g32580
malus_domestica	MD09G1200300.v1.1 MD15G1412900.v1.1
prunus_persica	Prupe.3G056900_v2.0.a1
pyrus_communis	pycom09g11790 pycom15g36770
rosa_chinensis	RchiOBHm_Chr2g0141031
rosa_laevigata	RLG00000019909
rosa_multiflora	Rmu_sc0004769.1_g000015 Rmu_sc0012897.1_g000007
rosa_roxburghii	Rroxscaffold_2G00104270
rosa_rugosa	Rorug02G0366200
rosa_samantha	Rh2AG417600 Rh2BG427500 Rh2CG403900 Rh2DG437000
rosa_wichuraiana	Rw2G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	186, 252
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	4 cut(s)	144, 150, 176, 294
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	62
AcyI	GRCGYC	2 cut(s)	183, 249
AfiI	CCNNNNNNNGG	7 cut(s)	186, 199, 230, 682, 774, 791, 921
AgsI	TTSAA	6 cut(s)	392, 574, 657, 782, 920, 1005
AhlI	ACTAGT	3 cut(s)	401, 712, 1007
AjnI	CCWGG	3 cut(s)	131, 329, 784
AluBI	AGCT	4 cut(s)	336, 478, 662, 734
AluI	AGCT	4 cut(s)	336, 478, 662, 734
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	7 cut(s)	17, 256, 302, 703, 872, 935, 988
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	3 cut(s)	166, 326, 892
ApeKI	GCWGC	2 cut(s)	527, 854
ApoI	RAATTY	1 cut(s)	62
ArsI	GACNNNNNNTTYG	4 cut(s)	212, 244, 871, 903
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	4 cut(s)	279, 327, 497, 892
AsuC2I	CCSGG	2 cut(s)	256, 318
AsuHPI	GGTGA	4 cut(s)	109, 257, 527, 800
AvaII	GGWCC	2 cut(s)	279, 497
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	539, 841
BccI	CCATC	2 cut(s)	377, 785
BceAI	ACGGC	2 cut(s)	172, 181
BciT130I	CCWGG	3 cut(s)	133, 331, 786
BclI	TGATCA	2 cut(s)	415, 844
BcnI	CCSGG	2 cut(s)	256, 318
BcoDI	GTCTC	7 cut(s)	17, 256, 302, 703, 872, 935, 988
BcuI	ACTAGT	3 cut(s)	401, 712, 1007
BfaI	CTAG	4 cut(s)	396, 402, 713, 1008
BfoI	RGCGCY	1 cut(s)	676
BisI	GCNGC	4 cut(s)	151, 295, 528, 855
BlsI	GCNGC	4 cut(s)	152, 296, 529, 856
Bme1390I	CCNGG	5 cut(s)	133, 256, 318, 331, 786
Bme18I	GGWCC	2 cut(s)	279, 497
BmgT120I	GGNCC	4 cut(s)	279, 327, 497, 892
BmiI	GGNNCC	3 cut(s)	191, 241, 315
BmrFI	CCNGG	5 cut(s)	133, 256, 318, 331, 786
BmsI	GCATC	2 cut(s)	539, 965
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	2 cut(s)	256, 318
BsaHI	GRCGYC	2 cut(s)	183, 249
BsaI	GGTCTC	2 cut(s)	935, 988
BsaJI	CCNNGG	5 cut(s)	131, 198, 264, 317, 329
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	7 cut(s)	186, 199, 230, 682, 774, 791, 921
Bse118I	RCCGGY	1 cut(s)	146
BseBI	CCWGG	3 cut(s)	133, 331, 786
BseDI	CCNNGG	5 cut(s)	131, 198, 264, 317, 329
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	7 cut(s)	186, 199, 230, 682, 774, 791, 921
BseMII	CTCAG	2 cut(s)	867, 948
BseRI	GAGGAG	4 cut(s)	5, 357, 458, 482
BseXI	GCAGC	2 cut(s)	539, 841
Bsh1285I	CGRYCG	1 cut(s)	869
BshFI	GGCC	3 cut(s)	168, 328, 894
BshNI	GGYRCC	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	869
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	4 cut(s)	147, 243, 255, 317
BslFI	GGGAC	2 cut(s)	60, 914
BslI	CCNNNNNNNGG	7 cut(s)	186, 199, 230, 682, 774, 791, 921
BsmAI	GTCTC	7 cut(s)	17, 256, 302, 703, 872, 935, 988
BsmBI	CGTCTC	3 cut(s)	17, 256, 302
BsmFI	GGGAC	2 cut(s)	60, 914
BsnI	GGCC	3 cut(s)	168, 328, 894
Bso31I	GGTCTC	2 cut(s)	935, 988
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	415, 844
BspACI	CCGC	4 cut(s)	144, 150, 176, 294
BspANI	GGCC	3 cut(s)	168, 328, 894
BspCNI	CTCAG	2 cut(s)	868, 947
BspLI	GGNNCC	3 cut(s)	191, 241, 315
BspQI	GCTCTTC	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	313
BspTNI	GGTCTC	2 cut(s)	935, 988
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	5 cut(s)	131, 198, 264, 317, 329
BssMI	GATC	2 cut(s)	415, 844
BssNI	GRCGYC	2 cut(s)	183, 249
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	3 cut(s)	133, 331, 786
Bst4CI	ACNGT	5 cut(s)	313, 560, 819, 870, 916
Bst6I	CTCTTC	1 cut(s)	724
BstACI	GRCGYC	2 cut(s)	183, 249
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	3 cut(s)	450, 876, 934
BstEII	GGTNACC	1 cut(s)	515
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	2 cut(s)	418, 847
BstMAI	GTCTC	7 cut(s)	17, 256, 302, 703, 872, 935, 988
BstMBI	GATC	2 cut(s)	415, 844
BstMCI	CGRYCG	1 cut(s)	869
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 165
BstNI	CCWGG	3 cut(s)	133, 331, 786
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	5 cut(s)	131, 254, 316, 329, 784
BstV1I	GCAGC	2 cut(s)	539, 841
BstV2I	GAAGAC	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	168, 328, 894
BtgZI	GCGATG	2 cut(s)	312, 396
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	148
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	1 cut(s)	675
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	4 cut(s)	279, 327, 497, 892
CsiI	ACCWGGT	1 cut(s)	784
CviAII	CATG	2 cut(s)	72, 611
DdeI	CTNAG	3 cut(s)	450, 876, 934
DpnI	GATC	2 cut(s)	417, 846
DpnII	GATC	2 cut(s)	415, 844
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	2 cut(s)	935, 988
Eco47I	GGWCC	2 cut(s)	279, 497
Eco53kI	GAGCTC	1 cut(s)	478
Eco91I	GGTNACC	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	478
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	327
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	131, 329, 784
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	3 cut(s)	17, 256, 302
FaeI	CATG	2 cut(s)	75, 614
FaiI	YATR	9 cut(s)	73, 612, 668, 738, 764, 973, 975, 980, 982
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FaqI	GGGAC	2 cut(s)	60, 914
FatI	CATG	2 cut(s)	71, 610
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	2 cut(s)	415, 844
Fnu4HI	GCNGC	4 cut(s)	151, 295, 528, 855
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	4 cut(s)	151, 295, 528, 855
FspBI	CTAG	4 cut(s)	396, 402, 713, 1008
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	4 cut(s)	151, 295, 528, 855
GsuI	CTGGAG	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	168, 328, 894
HapII	CCGG	4 cut(s)	147, 243, 255, 317
HhaI	GCGC	1 cut(s)	675
Hin1I	GRCGYC	2 cut(s)	183, 249
Hin1II	CATG	2 cut(s)	75, 614
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HinfI	GANTC	4 cut(s)	51, 272, 537, 778
HpaII	CCGG	4 cut(s)	147, 243, 255, 317
HphI	GGTGA	4 cut(s)	109, 257, 527, 800
Hpy166II	GTNNAC	2 cut(s)	279, 718
Hpy188I	TCNGA	2 cut(s)	636, 877
Hpy188III	TCNNGA	5 cut(s)	187, 419, 534, 657, 775
Hpy8I	GTNNAC	2 cut(s)	279, 718
Hpy99I	CGWCG	4 cut(s)	158, 185, 292, 365
HpyAV	CCTTC	7 cut(s)	124, 133, 230, 466, 568, 744, 872
HpyCH4III	ACNGT	5 cut(s)	313, 560, 819, 870, 916
HpyCH4IV	ACGT	2 cut(s)	183, 249
HpyCH4V	TGCA	5 cut(s)	509, 527, 569, 759, 912
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 165
HpyF3I	CTNAG	3 cut(s)	450, 876, 934
HpySE526I	ACGT	2 cut(s)	183, 249
Hsp92I	GRCGYC	2 cut(s)	183, 249
Hsp92II	CATG	2 cut(s)	75, 614
HspAI	GCGC	1 cut(s)	673
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	2 cut(s)	415, 844
Kzo9I	GATC	2 cut(s)	415, 844
LguI	GCTCTTC	1 cut(s)	724
LmnI	GCTCC	3 cut(s)	245, 333, 475
Lsp1109I	GCAGC	2 cut(s)	539, 841
LweI	GCATC	2 cut(s)	539, 965
MabI	ACCWGGT	1 cut(s)	784
MaeI	CTAG	4 cut(s)	396, 402, 713, 1008
MaeII	ACGT	2 cut(s)	183, 249
MaeIII	GTNAC	2 cut(s)	245, 515
MalI	GATC	2 cut(s)	417, 846
MboI	GATC	2 cut(s)	415, 844
MboII	GAAGA	6 cut(s)	130, 362, 632, 645, 741, 759
MfeI	CAATTG	1 cut(s)	907
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	4 cut(s)	62, 86, 796, 907
MreI	CGCCGGCG	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	1 cut(s)	492
MspI	CCGG	4 cut(s)	147, 243, 255, 317
MspR9I	CCNGG	5 cut(s)	133, 256, 318, 331, 786
MunI	CAATTG	1 cut(s)	907
MvaI	CCWGG	3 cut(s)	133, 331, 786
MwoI	GCNNNNNNNGC	2 cut(s)	156, 165
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	2 cut(s)	256, 318
NdeII	GATC	2 cut(s)	415, 844
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	75, 614
NlaIV	GGNNCC	3 cut(s)	191, 241, 315
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	245, 515
PciSI	GCTCTTC	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	2 cut(s)	384, 807
PdiI	GCCGGC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	4 cut(s)	51, 272, 537, 778
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	152, 296, 529, 856
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	3 cut(s)	131, 329, 784
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	3 cut(s)	131, 329, 784
PspN4I	GGNNCC	3 cut(s)	191, 241, 315
PspPI	GGNCC	4 cut(s)	279, 327, 497, 892
PstNI	CAGNNNCTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	724
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	4 cut(s)	151, 295, 528, 855
Sau3AI	GATC	2 cut(s)	415, 844
Sau96I	GGNCC	4 cut(s)	279, 327, 497, 892
ScrFI	CCNGG	5 cut(s)	133, 256, 318, 331, 786
SduI	GDGCHC	1 cut(s)	480
SexAI	ACCWGGT	1 cut(s)	784
SfaNI	GCATC	2 cut(s)	539, 965
SgrAI	CRCCGGYG	1 cut(s)	146
SinI	GGWCC	2 cut(s)	279, 497
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SpeI	ACTAGT	3 cut(s)	401, 712, 1007
Sse9I	AATT	4 cut(s)	62, 86, 796, 907
SsiI	CCGC	4 cut(s)	144, 150, 176, 294
SspMI	CTAG	4 cut(s)	396, 402, 713, 1008
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	5 cut(s)	131, 254, 316, 329, 784
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	5 cut(s)	313, 560, 819, 870, 916
TaiI	ACGT	2 cut(s)	186, 252
TaqI	TCGA	4 cut(s)	219, 287, 583, 865
TasI	AATT	4 cut(s)	62, 86, 796, 907
TauI	GCSGC	2 cut(s)	153, 297
TfiI	GAWTC	4 cut(s)	51, 272, 537, 778
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	2 cut(s)	245, 515
TseI	GCWGC	2 cut(s)	527, 854
Tsp45I	GTSAC	2 cut(s)	245, 515
TspDTI	ATGAA	2 cut(s)	561, 627
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	279, 497
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	4 cut(s)	396, 402, 713, 1008
ZraI	GACGTC	2 cut(s)	184, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.