Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004769.1

Orthogroup ID

OG0013162

Physical Location & Seq

Genomic Coordinates Forward (+)

55725 .. 58430

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004769.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgctctctcgtctcctccccaaaccctcacatttctctctcctaacccgaatctccacaaaattccacccatgtccccacccccaattcccctcccctctccaaaaccctaccttcaccaccttcctccccaggttcttctccgccggcggcgacggcaacaacggccaatccccgcccgacgtctggaacctttccaaggaaaccgatgagaacttcgaccctctgttcggcgaaagctccggtgacgtctccgggatagccgattcgtggaccaaatcgacaggcggcgatgagtgggagacggtgccggggtttaggccgtggagcttgggaggagaggaagataagggcgacgatttgttccaagtcggcgatggcgttcaaactaggactagtgtggagagtgatcaggaggatgagggtaagaggatagaggaggctaagaggcttgagaaagaggagaaggagctcactgctgttcttaaaggtccaaatcgtgcatttggtgaccttgttgcagcatctggaatcacagatgaaatgcttgacagcttgattgcattgaaggattttcgagggataaagggattacctccactacatgaaatagaagacattcgctatcagaaaaacacaagtaaatcttcgagagctgatatagagcgccagaaacaggaggaagttgccaaagcaagagtgagactagtggacgacaagggaagagcttatggaacaggaagaaggaaatgcagtatagcccgtgtctggattcaacctggtgatggtaatttcgtcatcaacgataaacagtttgatgtctattttccaatgcttgatcatcgtgctgctatccttcgaccattctctgagacaaaaactttgggcctttgggacatcaattgcaccgttcaagggggtggtctctcaggtcaagttggagcaatacgattaggagttagcagggccttgcaaaattgggaaccggacttgcgtccaacactcaaagcttctggtttcttgactagggactcacgtgctgtggaaaggaaaaaaccaggaaaagcaaaagcaaggaagagcttccaatgggtcaagcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009987 GO:0010467 GO:0015935 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030154 GO:0030490 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

367

Amino Acids

40.92

Weight (kDa)

8.29

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49080
fragaria_vesca	FvH4_6g32580
malus_domestica	MD09G1200300.v1.1 MD15G1412900.v1.1
prunus_persica	Prupe.3G056900_v2.0.a1
pyrus_communis	pycom09g11790 pycom15g36770
rosa_chinensis	RchiOBHm_Chr2g0141031
rosa_laevigata	RLG00000019909
rosa_multiflora	Rmu_sc0004769.1_g000015 Rmu_sc0012897.1_g000007
rosa_roxburghii	Rroxscaffold_2G00104270
rosa_rugosa	Rorug02G0366200
rosa_samantha	Rh2AG417600 Rh2BG427500 Rh2CG403900 Rh2DG437000
rosa_wichuraiana	Rw2G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	186, 252
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	4 cut(s)	144, 150, 176, 288
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	1037
AcyI	GRCGYC	2 cut(s)	183, 249
AfiI	CCNNNNNNNGG	8 cut(s)	186, 199, 230, 270, 676, 768, 785, 915
AgsI	TTSAA	4 cut(s)	386, 568, 776, 914
AhlI	ACTAGT	2 cut(s)	395, 706
AjnI	CCWGG	3 cut(s)	131, 778, 1057
AluBI	AGCT	8 cut(s)	240, 330, 472, 555, 656, 728, 1010, 1083
AluI	AGCT	8 cut(s)	240, 330, 472, 555, 656, 728, 1010, 1083
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	6 cut(s)	17, 256, 296, 697, 866, 929
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	4 cut(s)	166, 320, 886, 966
ApeKI	GCWGC	2 cut(s)	521, 848
ApoI	RAATTY	1 cut(s)	62
ArsI	GACNNNNNNTTYG	4 cut(s)	212, 244, 865, 897
Asp700I	GAANNNNTTC	2 cut(s)	618, 1082
AspLEI	GCGC	1 cut(s)	669
AspS9I	GGNCC	4 cut(s)	273, 491, 886, 966
AsuC2I	CCSGG	2 cut(s)	256, 312
AsuHPI	GGTGA	4 cut(s)	109, 257, 521, 794
AvaII	GGWCC	2 cut(s)	273, 491
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	533, 835
BccI	CCATC	2 cut(s)	371, 779
BceAI	ACGGC	3 cut(s)	172, 181, 307
BciT130I	CCWGG	3 cut(s)	133, 780, 1059
BclI	TGATCA	2 cut(s)	409, 838
BcnI	CCSGG	2 cut(s)	256, 312
BcoDI	GTCTC	6 cut(s)	17, 256, 296, 697, 866, 929
BcuI	ACTAGT	2 cut(s)	395, 706
BfaI	CTAG	4 cut(s)	390, 396, 707, 1026
BfoI	RGCGCY	1 cut(s)	670
BisI	GCNGC	4 cut(s)	151, 289, 522, 849
BlsI	GCNGC	4 cut(s)	152, 290, 523, 850
Bme1390I	CCNGG	5 cut(s)	133, 256, 312, 780, 1059
Bme18I	GGWCC	2 cut(s)	273, 491
BmgT120I	GGNCC	4 cut(s)	273, 491, 886, 966
BmiI	GGNNCC	3 cut(s)	191, 309, 984
BmrFI	CCNGG	5 cut(s)	133, 256, 312, 780, 1059
BmsI	GCATC	1 cut(s)	533
BoxI	GACNNNNGTC	1 cut(s)	993
BpiI	GAAGAC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	2 cut(s)	256, 312
BsaAI	YACGTR	1 cut(s)	1037
BsaHI	GRCGYC	2 cut(s)	183, 249
BsaI	GGTCTC	1 cut(s)	929
BsaJI	CCNNGG	4 cut(s)	131, 198, 311, 323
BsaWI	WCCGGW	2 cut(s)	242, 985
Bsc4I	CCNNNNNNNGG	8 cut(s)	186, 199, 230, 270, 676, 768, 785, 915
Bse118I	RCCGGY	1 cut(s)	146
BseBI	CCWGG	3 cut(s)	133, 780, 1059
BseDI	CCNNGG	4 cut(s)	131, 198, 311, 323
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	8 cut(s)	186, 199, 230, 270, 676, 768, 785, 915
BseMII	CTCAG	2 cut(s)	861, 942
BseRI	GAGGAG	4 cut(s)	5, 351, 452, 476
BseXI	GCAGC	2 cut(s)	533, 835
BshFI	GGCC	4 cut(s)	168, 322, 888, 968
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	5 cut(s)	147, 243, 255, 311, 986
BslFI	GGGAC	3 cut(s)	60, 908, 1043
BslI	CCNNNNNNNGG	8 cut(s)	186, 199, 230, 270, 676, 768, 785, 915
BsmAI	GTCTC	6 cut(s)	17, 256, 296, 697, 866, 929
BsmBI	CGTCTC	3 cut(s)	17, 256, 296
BsmFI	GGGAC	3 cut(s)	60, 908, 1043
BsnI	GGCC	4 cut(s)	168, 322, 888, 968
Bso31I	GGTCTC	1 cut(s)	929
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	409, 838
BspACI	CCGC	4 cut(s)	144, 150, 176, 288
BspANI	GGCC	4 cut(s)	168, 322, 888, 968
BspCNI	CTCAG	2 cut(s)	862, 941
BspLI	GGNNCC	3 cut(s)	191, 309, 984
BspQI	GCTCTTC	2 cut(s)	718, 1073
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	929
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	4 cut(s)	131, 198, 311, 323
BssMI	GATC	2 cut(s)	409, 838
BssNI	GRCGYC	2 cut(s)	183, 249
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	3 cut(s)	133, 780, 1059
Bst4CI	ACNGT	3 cut(s)	307, 813, 910
Bst6I	CTCTTC	2 cut(s)	718, 1073
BstACI	GRCGYC	2 cut(s)	183, 249
BstBAI	YACGTR	1 cut(s)	1037
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	3 cut(s)	444, 870, 928
BstDSI	CCRYGG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	509
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	670
BstHHI	GCGC	1 cut(s)	669
BstKTI	GATC	2 cut(s)	412, 841
BstMAI	GTCTC	6 cut(s)	17, 256, 296, 697, 866, 929
BstMBI	GATC	2 cut(s)	409, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 165
BstNI	CCWGG	3 cut(s)	133, 780, 1059
BstPAI	GACNNNNGTC	1 cut(s)	993
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	5 cut(s)	131, 254, 310, 778, 1057
BstV1I	GCAGC	2 cut(s)	533, 835
BstV2I	GAAGAC	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	168, 322, 888, 968
BtgI	CCRYGG	1 cut(s)	323
BtgZI	GCGATG	2 cut(s)	306, 390
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	148
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	669
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	4 cut(s)	273, 491, 886, 966
CseI	GACGC	1 cut(s)	983
CsiI	ACCWGGT	1 cut(s)	778
CviAII	CATG	2 cut(s)	72, 605
DdeI	CTNAG	3 cut(s)	444, 870, 928
DpnI	GATC	2 cut(s)	411, 840
DpnII	GATC	2 cut(s)	409, 838
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	718, 1073
EarI	CTCTTC	2 cut(s)	718, 1073
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	929
Eco47I	GGWCC	2 cut(s)	273, 491
Eco53kI	GAGCTC	1 cut(s)	472
Eco72I	CACGTG	1 cut(s)	1037
Eco91I	GGTNACC	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	472
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	966
EcoO65I	GGTNACC	1 cut(s)	509
EcoRII	CCWGG	3 cut(s)	131, 778, 1057
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	3 cut(s)	17, 256, 296
FaeI	CATG	2 cut(s)	75, 608
FaiI	YATR	5 cut(s)	73, 606, 662, 732, 758
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FaqI	GGGAC	3 cut(s)	60, 908, 1043
FatI	CATG	2 cut(s)	71, 604
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	2 cut(s)	409, 838
Fnu4HI	GCNGC	4 cut(s)	151, 289, 522, 849
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	4 cut(s)	151, 289, 522, 849
FspBI	CTAG	4 cut(s)	390, 396, 707, 1026
GlaI	GCGC	1 cut(s)	668
GluI	GCNGC	4 cut(s)	151, 289, 522, 849
HaeII	RGCGCY	1 cut(s)	670
HaeIII	GGCC	4 cut(s)	168, 322, 888, 968
HapII	CCGG	5 cut(s)	147, 243, 255, 311, 986
HgaI	GACGC	1 cut(s)	983
HhaI	GCGC	1 cut(s)	669
Hin1I	GRCGYC	2 cut(s)	183, 249
Hin1II	CATG	2 cut(s)	75, 608
Hin6I	GCGC	1 cut(s)	667
HinP1I	GCGC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	1008
HinfI	GANTC	5 cut(s)	51, 266, 531, 772, 1031
HpaII	CCGG	5 cut(s)	147, 243, 255, 311, 986
HphI	GGTGA	4 cut(s)	109, 257, 521, 794
Hpy166II	GTNNAC	2 cut(s)	273, 712
Hpy188I	TCNGA	2 cut(s)	630, 871
Hpy188III	TCNNGA	6 cut(s)	187, 413, 528, 651, 769, 1021
Hpy8I	GTNNAC	2 cut(s)	273, 712
Hpy99I	CGWCG	3 cut(s)	158, 185, 359
HpyAV	CCTTC	6 cut(s)	124, 133, 460, 562, 738, 866
HpyCH4III	ACNGT	3 cut(s)	307, 813, 910
HpyCH4IV	ACGT	3 cut(s)	183, 249, 1036
HpyCH4V	TGCA	6 cut(s)	503, 521, 563, 753, 906, 973
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 165
HpyF3I	CTNAG	3 cut(s)	444, 870, 928
HpySE526I	ACGT	3 cut(s)	183, 249, 1036
Hsp92I	GRCGYC	2 cut(s)	183, 249
Hsp92II	CATG	2 cut(s)	75, 608
HspAI	GCGC	1 cut(s)	667
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	2 cut(s)	409, 838
Kzo9I	GATC	2 cut(s)	409, 838
LguI	GCTCTTC	2 cut(s)	718, 1073
LmnI	GCTCC	4 cut(s)	245, 327, 469, 941
Lsp1109I	GCAGC	2 cut(s)	533, 835
LweI	GCATC	1 cut(s)	533
MabI	ACCWGGT	1 cut(s)	778
MaeI	CTAG	4 cut(s)	390, 396, 707, 1026
MaeII	ACGT	3 cut(s)	183, 249, 1036
MaeIII	GTNAC	2 cut(s)	245, 509
MalI	GATC	2 cut(s)	411, 840
MboI	GATC	2 cut(s)	409, 838
MboII	GAAGA	7 cut(s)	130, 356, 626, 639, 735, 753, 1090
MfeI	CAATTG	1 cut(s)	901
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	5 cut(s)	62, 86, 790, 901, 976
MlyI	GAGTC	1 cut(s)	1025
MmeI	TCCRAC	2 cut(s)	919, 1022
MreI	CGCCGGCG	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	146
MroXI	GAANNNNTTC	2 cut(s)	618, 1082
MseI	TTAA	1 cut(s)	486
MspI	CCGG	5 cut(s)	147, 243, 255, 311, 986
MspR9I	CCNGG	5 cut(s)	133, 256, 312, 780, 1059
MunI	CAATTG	1 cut(s)	901
MvaI	CCWGG	3 cut(s)	133, 780, 1059
MwoI	GCNNNNNNNGC	2 cut(s)	156, 165
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	2 cut(s)	256, 312
NdeII	GATC	2 cut(s)	409, 838
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	75, 608
NlaIV	GGNNCC	3 cut(s)	191, 309, 984
NmuCI	GTSAC	2 cut(s)	245, 509
PciSI	GCTCTTC	2 cut(s)	718, 1073
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 801
PdiI	GCCGGC	1 cut(s)	148
PdmI	GAANNNNTTC	2 cut(s)	618, 1082
PfeI	GAWTC	4 cut(s)	51, 266, 531, 772
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	152, 290, 523, 850
PleI	GAGTC	1 cut(s)	1025
PmaCI	CACGTG	1 cut(s)	1037
PmlI	CACGTG	1 cut(s)	1037
PpsI	GAGTC	1 cut(s)	1025
Ppu21I	YACGTR	1 cut(s)	1037
PshAI	GACNNNNGTC	1 cut(s)	993
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	3 cut(s)	131, 778, 1057
PspCI	CACGTG	1 cut(s)	1037
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	3 cut(s)	131, 778, 1057
PspN4I	GGNNCC	3 cut(s)	191, 309, 984
PspPI	GGNCC	4 cut(s)	273, 491, 886, 966
PstNI	CAGNNNCTG	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	474
SapI	GCTCTTC	2 cut(s)	718, 1073
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	4 cut(s)	151, 289, 522, 849
Sau3AI	GATC	2 cut(s)	409, 838
Sau96I	GGNCC	4 cut(s)	273, 491, 886, 966
SchI	GAGTC	1 cut(s)	1025
ScrFI	CCNGG	5 cut(s)	133, 256, 312, 780, 1059
SduI	GDGCHC	1 cut(s)	474
SexAI	ACCWGGT	1 cut(s)	778
SfaNI	GCATC	1 cut(s)	533
SgrAI	CRCCGGYG	1 cut(s)	146
SinI	GGWCC	2 cut(s)	273, 491
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SpeI	ACTAGT	2 cut(s)	395, 706
Sse9I	AATT	5 cut(s)	62, 86, 790, 901, 976
SsiI	CCGC	4 cut(s)	144, 150, 176, 288
SspMI	CTAG	4 cut(s)	390, 396, 707, 1026
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	5 cut(s)	131, 254, 310, 778, 1057
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	307, 813, 910
TaiI	ACGT	3 cut(s)	186, 252, 1039
TaqI	TCGA	5 cut(s)	219, 281, 577, 650, 859
TasI	AATT	5 cut(s)	62, 86, 790, 901, 976
TauI	GCSGC	2 cut(s)	153, 291
TfiI	GAWTC	4 cut(s)	51, 266, 531, 772
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	2 cut(s)	245, 509
TseI	GCWGC	2 cut(s)	521, 848
Tsp45I	GTSAC	2 cut(s)	245, 509
TspDTI	ATGAA	2 cut(s)	555, 621
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	2 cut(s)	273, 491
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XmnI	GAANNNNTTC	2 cut(s)	618, 1082
XspI	CTAG	4 cut(s)	390, 396, 707, 1026
ZraI	GACGTC	2 cut(s)	184, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.