Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013162

Physical Location & Seq

Genomic Coordinates Reverse (-)

27350026 .. 27353824

Gene Structure 3799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCTTTCTCGTCTCCTCCCAAAACCCTCACATTTCTCTCTTCTAACCCGAATCTCCTCAAAATTCCATCCATGTCCCCACCCCCAATTCCCCTCCCCACTCCAAAACCCTACCTTCACCACCTTCCTCCCCAGGTTCTTCTCCGCCGCCGGCGACGGCAACAACGGCCAATCCCCGTCCGACGTCTGGAACCTTTCCAAGGAAACCGATGAGAACTTGGACCCTCTGTTCGGCGACAGCTCCGGTGACGTCTCTGGGATAGCCGAGGCTGATTCGTGGACCAAATCGACGGGCGGCGATGAGTGGGAGACGGTGCCGGGGTTTAGGCCGTGGAGCTTGGGAGGAGAGGAAGATAAGGGCGACGATTTGTTCCAAGTCGGCGATGGCGTTCAAACTAGGACTAGTGTGGAGAGTGATCAGGAGGATGAGGGTAAGAAGATAGAGGAGGCTAAGAGGCTTGAGAGAGAGGAGAAGGAGCTCACTGCTGTTCTTAAAGGTCCAAATCGTGCATTTGGTGACCTTGTTGCTGCATCTGGAATCACAGATGAAATGCTTGACAGTTTGATTGCATTAAAGGATTTTCGAGGGATAAAGGGATTACCTCCACTACATGAACTAGAAGACATTCGTTATCAGAAAAATACAAGTAAATCTTCAAGAGCTGATATAGAGCGCCAGAAACAGGAGGAAGTTGCCAGAGCAAGAGTGAGACTAGTGGATGACAAGGGAAGAGCTTATGGAACAGGAAGAAGGAAATGCAGTATAGCCCGTGTTTGGATTCAACCTGGTGATGGTAATTTTATTATCAACGATAAACAGTTTGATGTCTATTTTCCAATGCTTGATCATCGTGCTGCTATCCTTCAACCGTTCTCTGAGACAAAAACTTTGGGCCTGTGGGACATCAATTGCACCGTTCAAGGGGGTGGTCTCTCAGCTGGTTTCTTGACTAGGGACCCACGTGCTGTGGAAAGGAAAAAACCAGGAAAAGCAAAAGCAAGGAAGAGCTTCCAATGGGTCAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009987 GO:0010467 GO:0015935 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030154 GO:0030490 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

342

Amino Acids

38.14

Weight (kDa)

6.28

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	249 - 313	2.5e-16	Ribosomal protein S9/S16
Ribosomal_S9	PF00380	313 - 342	1.5e-09	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49080
fragaria_vesca	FvH4_6g32580
malus_domestica	MD09G1200300.v1.1 MD15G1412900.v1.1
prunus_persica	Prupe.3G056900_v2.0.a1
pyrus_communis	pycom09g11790 pycom15g36770
rosa_chinensis	RchiOBHm_Chr2g0141031
rosa_laevigata	RLG00000019909
rosa_multiflora	Rmu_sc0004769.1_g000015 Rmu_sc0012897.1_g000007
rosa_roxburghii	Rroxscaffold_2G00104270
rosa_rugosa	Rorug02G0366200
rosa_samantha	Rh2AG417600 Rh2BG427500 Rh2CG403900 Rh2DG437000
rosa_wichuraiana	Rw2G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	186, 252
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	3 cut(s)	144, 147, 294
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	962
AcyI	GRCGYC	2 cut(s)	183, 249
AfiI	CCNNNNNNNGG	7 cut(s)	186, 199, 230, 682, 774, 791, 921
AgsI	TTSAA	5 cut(s)	392, 657, 782, 866, 920
AhlI	ACTAGT	2 cut(s)	401, 712
AjnI	CCWGG	3 cut(s)	131, 784, 982
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	7 cut(s)	240, 336, 478, 662, 734, 938, 1008
AluI	AGCT	7 cut(s)	240, 336, 478, 662, 734, 938, 1008
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	6 cut(s)	17, 256, 302, 703, 872, 935
AoxI	GGCC	3 cut(s)	166, 326, 892
ApeKI	GCWGC	2 cut(s)	527, 854
ApoI	RAATTY	1 cut(s)	62
ArsI	GACNNNNNNTTYG	4 cut(s)	212, 244, 871, 903
Asp700I	GAANNNNTTC	2 cut(s)	624, 1007
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	5 cut(s)	220, 279, 497, 892, 955
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	4 cut(s)	109, 257, 527, 800
AvaII	GGWCC	4 cut(s)	220, 279, 497, 955
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	480
BbrPI	CACGTG	1 cut(s)	962
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	514, 841
BccI	CCATC	3 cut(s)	75, 377, 785
BceAI	ACGGC	3 cut(s)	172, 181, 313
BciT130I	CCWGG	3 cut(s)	133, 786, 984
BclI	TGATCA	2 cut(s)	415, 844
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	6 cut(s)	17, 256, 302, 703, 872, 935
BcuI	ACTAGT	2 cut(s)	401, 712
BfaI	CTAG	5 cut(s)	396, 402, 617, 713, 951
BfoI	RGCGCY	1 cut(s)	676
BisI	GCNGC	4 cut(s)	147, 295, 528, 855
BlsI	GCNGC	4 cut(s)	148, 296, 529, 856
Bme1390I	CCNGG	4 cut(s)	133, 318, 786, 984
Bme18I	GGWCC	4 cut(s)	220, 279, 497, 955
BmgT120I	GGNCC	5 cut(s)	220, 279, 497, 892, 955
BmiI	GGNNCC	5 cut(s)	191, 222, 315, 956, 957
BmrFI	CCNGG	4 cut(s)	133, 318, 786, 984
BmsI	GCATC	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	962
BsaHI	GRCGYC	2 cut(s)	183, 249
BsaI	GGTCTC	1 cut(s)	935
BsaJI	CCNNGG	5 cut(s)	131, 198, 264, 317, 329
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	7 cut(s)	186, 199, 230, 682, 774, 791, 921
Bse118I	RCCGGY	1 cut(s)	149
BseBI	CCWGG	3 cut(s)	133, 786, 984
BseDI	CCNNGG	5 cut(s)	131, 198, 264, 317, 329
BseGI	GGATG	3 cut(s)	67, 430, 724
BseLI	CCNNNNNNNGG	7 cut(s)	186, 199, 230, 682, 774, 791, 921
BseMII	CTCAG	2 cut(s)	867, 948
BseRI	GAGGAG	5 cut(s)	5, 46, 357, 458, 482
BseXI	GCAGC	2 cut(s)	514, 841
BshFI	GGCC	3 cut(s)	168, 328, 894
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	3 cut(s)	150, 243, 317
BslFI	GGGAC	3 cut(s)	60, 914, 968
BslI	CCNNNNNNNGG	7 cut(s)	186, 199, 230, 682, 774, 791, 921
BsmAI	GTCTC	6 cut(s)	17, 256, 302, 703, 872, 935
BsmBI	CGTCTC	3 cut(s)	17, 256, 302
BsmFI	GGGAC	3 cut(s)	60, 914, 968
BsnI	GGCC	3 cut(s)	168, 328, 894
Bso31I	GGTCTC	1 cut(s)	935
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	415, 844
BspACI	CCGC	3 cut(s)	144, 147, 294
BspANI	GGCC	3 cut(s)	168, 328, 894
BspCNI	CTCAG	2 cut(s)	868, 947
BspLI	GGNNCC	5 cut(s)	191, 222, 315, 956, 957
BspQI	GCTCTTC	2 cut(s)	724, 998
BspT107I	GGYRCC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	935
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	5 cut(s)	131, 198, 264, 317, 329
BssMI	GATC	2 cut(s)	415, 844
BssNI	GRCGYC	2 cut(s)	183, 249
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	3 cut(s)	133, 786, 984
Bst4CI	ACNGT	5 cut(s)	313, 560, 819, 870, 916
Bst6I	CTCTTC	3 cut(s)	45, 724, 998
BstACI	GRCGYC	2 cut(s)	183, 249
BstBAI	YACGTR	1 cut(s)	962
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	450, 876, 934
BstDSI	CCRYGG	1 cut(s)	329
BstEII	GGTNACC	1 cut(s)	515
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	3 cut(s)	67, 430, 724
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	2 cut(s)	418, 847
BstMAI	GTCTC	6 cut(s)	17, 256, 302, 703, 872, 935
BstMBI	GATC	2 cut(s)	415, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	3 cut(s)	133, 786, 984
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	4 cut(s)	131, 316, 784, 982
BstV1I	GCAGC	2 cut(s)	514, 841
BstV2I	GAAGAC	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	168, 328, 894
BtgI	CCRYGG	1 cut(s)	329
BtgZI	GCGATG	2 cut(s)	312, 396
BtsCI	GGATG	3 cut(s)	67, 430, 724
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	675
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	5 cut(s)	220, 279, 497, 892, 955
CsiI	ACCWGGT	1 cut(s)	784
CviAII	CATG	2 cut(s)	72, 611
DdeI	CTNAG	3 cut(s)	450, 876, 934
DpnI	GATC	2 cut(s)	417, 846
DpnII	GATC	2 cut(s)	415, 844
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	45, 724, 998
EarI	CTCTTC	3 cut(s)	45, 724, 998
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	935
Eco47I	GGWCC	4 cut(s)	220, 279, 497, 955
Eco53kI	GAGCTC	1 cut(s)	478
Eco72I	CACGTG	1 cut(s)	962
Eco91I	GGTNACC	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	478
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	955
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	131, 784, 982
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	3 cut(s)	17, 256, 302
FaeI	CATG	2 cut(s)	75, 614
FaiI	YATR	5 cut(s)	73, 612, 668, 738, 764
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FaqI	GGGAC	3 cut(s)	60, 914, 968
FatI	CATG	2 cut(s)	71, 610
FbaI	TGATCA	2 cut(s)	415, 844
Fnu4HI	GCNGC	4 cut(s)	147, 295, 528, 855
FokI	GGATG	3 cut(s)	54, 437, 731
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	4 cut(s)	147, 295, 528, 855
FspBI	CTAG	5 cut(s)	396, 402, 617, 713, 951
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	4 cut(s)	147, 295, 528, 855
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	168, 328, 894
HapII	CCGG	3 cut(s)	150, 243, 317
HhaI	GCGC	1 cut(s)	675
Hin1I	GRCGYC	2 cut(s)	183, 249
Hin1II	CATG	2 cut(s)	75, 614
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HinfI	GANTC	4 cut(s)	51, 272, 537, 778
HpaII	CCGG	3 cut(s)	150, 243, 317
HphI	GGTGA	4 cut(s)	109, 257, 527, 800
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	3 cut(s)	181, 636, 877
Hpy188III	TCNNGA	5 cut(s)	187, 419, 534, 657, 946
Hpy8I	GTNNAC	1 cut(s)	279
Hpy99I	CGWCG	4 cut(s)	158, 185, 292, 365
HpyAV	CCTTC	5 cut(s)	124, 133, 466, 744, 872
HpyCH4III	ACNGT	5 cut(s)	313, 560, 819, 870, 916
HpyCH4IV	ACGT	3 cut(s)	183, 249, 961
HpyCH4V	TGCA	5 cut(s)	509, 530, 569, 759, 912
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	3 cut(s)	450, 876, 934
HpySE526I	ACGT	3 cut(s)	183, 249, 961
Hsp92I	GRCGYC	2 cut(s)	183, 249
Hsp92II	CATG	2 cut(s)	75, 614
HspAI	GCGC	1 cut(s)	673
KflI	GGGWCCC	1 cut(s)	955
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Ksp22I	TGATCA	2 cut(s)	415, 844
Kzo9I	GATC	2 cut(s)	415, 844
LguI	GCTCTTC	2 cut(s)	724, 998
LmnI	GCTCC	3 cut(s)	245, 333, 475
Lsp1109I	GCAGC	2 cut(s)	514, 841
LweI	GCATC	1 cut(s)	539
MabI	ACCWGGT	1 cut(s)	784
MaeI	CTAG	5 cut(s)	396, 402, 617, 713, 951
MaeII	ACGT	3 cut(s)	183, 249, 961
MaeIII	GTNAC	2 cut(s)	245, 515
MalI	GATC	2 cut(s)	417, 846
MboI	GATC	2 cut(s)	415, 844
MboII	GAAGA	9 cut(s)	32, 130, 362, 448, 632, 645, 741, 759, 1015
MfeI	CAATTG	1 cut(s)	907
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	4 cut(s)	62, 86, 796, 907
MmeI	TCCRAC	1 cut(s)	204
MreI	CGCCGGCG	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	149
MroXI	GAANNNNTTC	2 cut(s)	624, 1007
MseI	TTAA	2 cut(s)	492, 572
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	3 cut(s)	150, 243, 317
MspR9I	CCNGG	4 cut(s)	133, 318, 786, 984
MunI	CAATTG	1 cut(s)	907
MvaI	CCWGG	3 cut(s)	133, 786, 984
MwoI	GCNNNNNNNGC	1 cut(s)	165
NaeI	GCCGGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	2 cut(s)	415, 844
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	75, 614
NlaIV	GGNNCC	5 cut(s)	191, 222, 315, 956, 957
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	245, 515
PciSI	GCTCTTC	2 cut(s)	724, 998
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	151
PdmI	GAANNNNTTC	2 cut(s)	624, 1007
PfeI	GAWTC	4 cut(s)	51, 272, 537, 778
PkrI	GCNGC	4 cut(s)	148, 296, 529, 856
PmaCI	CACGTG	1 cut(s)	962
PmlI	CACGTG	1 cut(s)	962
Ppu21I	YACGTR	1 cut(s)	962
PpuMI	RGGWCCY	1 cut(s)	955
Psp124BI	GAGCTC	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	955
Psp6I	CCWGG	3 cut(s)	131, 784, 982
PspCI	CACGTG	1 cut(s)	962
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	3 cut(s)	131, 784, 982
PspN4I	GGNNCC	5 cut(s)	191, 222, 315, 956, 957
PspPI	GGNCC	5 cut(s)	220, 279, 497, 892, 955
PspPPI	RGGWCCY	1 cut(s)	955
PvuII	CAGCTG	1 cut(s)	938
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	2 cut(s)	724, 998
SaqAI	TTAA	2 cut(s)	492, 572
SatI	GCNGC	4 cut(s)	147, 295, 528, 855
Sau3AI	GATC	2 cut(s)	415, 844
Sau96I	GGNCC	5 cut(s)	220, 279, 497, 892, 955
ScrFI	CCNGG	4 cut(s)	133, 318, 786, 984
SduI	GDGCHC	1 cut(s)	480
SexAI	ACCWGGT	1 cut(s)	784
SfaNI	GCATC	1 cut(s)	539
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	4 cut(s)	220, 279, 497, 955
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SpeI	ACTAGT	2 cut(s)	401, 712
Sse9I	AATT	4 cut(s)	62, 86, 796, 907
SsiI	CCGC	3 cut(s)	144, 147, 294
SspMI	CTAG	5 cut(s)	396, 402, 617, 713, 951
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	4 cut(s)	131, 316, 784, 982
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	5 cut(s)	313, 560, 819, 870, 916
TaiI	ACGT	3 cut(s)	186, 252, 964
TaqI	TCGA	2 cut(s)	287, 583
TasI	AATT	4 cut(s)	62, 86, 796, 907
TauI	GCSGC	2 cut(s)	149, 297
TfiI	GAWTC	4 cut(s)	51, 272, 537, 778
Tru1I	TTAA	2 cut(s)	492, 572
Tru9I	TTAA	2 cut(s)	492, 572
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	2 cut(s)	245, 515
TseI	GCWGC	2 cut(s)	527, 854
Tsp45I	GTSAC	2 cut(s)	245, 515
TspDTI	ATGAA	2 cut(s)	561, 627
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	4 cut(s)	220, 279, 497, 955
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmnI	GAANNNNTTC	2 cut(s)	624, 1007
XspI	CTAG	5 cut(s)	396, 402, 617, 713, 951
ZraI	GACGTC	2 cut(s)	184, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.