Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013162

Physical Location & Seq

Genomic Coordinates Forward (+)

25627785 .. 25632633

Gene Structure 4849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCTCTCTCGCCTCCTCCCCAAACCCTCACGTTTCTCTCTCCTAACCCGAATCTCCTCAAAATTCCATCCATGTCCCCACCCCCGAATCCCCTCCCGGCCCCAAAACCCTACTTCTTTCCCCACCTTCCTCCCCAGATTCTTCTCCACCGGCGGCGACGACCACTCCCCGCCGGACCTCTGGAAGCTCTCCAAGGAAACCGACGAGAATTTCGATCCTTTGTTCGGCGACGGCTCCGGTGAGGTCTCCGGGACAGCCGAGGCCGGTTCGCGGAAGGGCGGCGATGAGTGGGAGACGGCGGAGGGGTTTCGGCCGTGGAGCTTGGGAGGAGGGGAGGAGAAGATTGATGACTTGTTCAAAGTCGGCGATGGGTTTCGAGGGAATAGTGGTGTGGAGATAGAGGAGGAGGAGGATGGGGAGAAGAGGATAGAGGAGGCTAAGAGGCTTGAGCAGAAGGAGAAGGAGCTCACTGCTGTTCTTAAAGGTCCAAATCGTGCATTTGGTGACCTTATTGCTGCATCTGGGATCACAGATGAGATGCTTGACAGTTTGATTGCATTGAAGGATTTTCAAGGGATAAAGGGATTGCCTCCACTAGAGGAAATTGAAGACATTCGTTATCAGAAAAATACAAGTAAATCATCTAGAGCTGATATAGAGCGCCAGAAACAGGAGGAAGTTGCCAAAGCAAGAGTGAGACAAGTGGACGACAAGGAAAGAGCTTATGGAACAGGAAGAAGGAAATGCAGTGTAGCCCGTGTCTGGATTCTGCCTGGTCAGGGTAACTTCGTCATCAATGATAAACAGTTTGATGTCTATTTTCCAATGCTTGATCATCGTGCTGCTATCCTTCTACCATTCTCTGAGACAAAAACTTTGGGCCTTTGGGACATCAATTGCACCGTTCAGGGCGGTGGACTCTCCGGTCAAGTTGGAGCAATACAATTAGGAGTTAGCAGGGCCTTGCAAAACTGGGAACCAGACTTGCGTCCTACACTCAAAGCTTCTGGTTTCTTGACTAGGGACTCACGTGTTGTGGAAAGGAAAAAACCAGGAAAAGCAAAAGCAAGGAAGAGCTTCCAATGGGTCAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009987 GO:0010467 GO:0015935 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030154 GO:0030490 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

366

Amino Acids

40.78

Weight (kDa)

8.28

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	245 - 365	3e-43	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49080
fragaria_vesca	FvH4_6g32580
malus_domestica	MD09G1200300.v1.1 MD15G1412900.v1.1
prunus_persica	Prupe.3G056900_v2.0.a1
pyrus_communis	pycom09g11790 pycom15g36770
rosa_chinensis	RchiOBHm_Chr2g0141031
rosa_laevigata	RLG00000019909
rosa_multiflora	Rmu_sc0004769.1_g000015 Rmu_sc0012897.1_g000007
rosa_roxburghii	Rroxscaffold_2G00104270
rosa_rugosa	Rorug02G0366200
rosa_samantha	Rh2AG417600 Rh2BG427500 Rh2CG403900 Rh2DG437000
rosa_wichuraiana	Rw2G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	924
AccII	CGCG	1 cut(s)	271
AciI	CCGC	6 cut(s)	153, 170, 271, 279, 299, 912
AclWI	GGATC	2 cut(s)	209, 533
AcoI	YGGCCR	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	62, 208
AcvI	CACGTG	1 cut(s)	1031
AfiI	CCNNNNNNNGG	5 cut(s)	224, 270, 670, 762, 779
AflIII	ACRYGT	1 cut(s)	1030
AgsI	TTSAA	4 cut(s)	358, 562, 572, 608
AjnI	CCWGG	2 cut(s)	772, 1051
AluBI	AGCT	7 cut(s)	187, 321, 466, 650, 722, 1004, 1077
AluI	AGCT	7 cut(s)	187, 321, 466, 650, 722, 1004, 1077
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	4 cut(s)	250, 287, 691, 860
AlwI	GGATC	2 cut(s)	209, 533
AoxI	GGCC	5 cut(s)	98, 261, 311, 880, 960
ApeKI	GCWGC	2 cut(s)	515, 842
ApoI	RAATTY	2 cut(s)	62, 208
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 226, 859, 891
Asp700I	GAANNNNTTC	2 cut(s)	612, 1076
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	5 cut(s)	99, 175, 485, 880, 960
AsuC2I	CCSGG	2 cut(s)	97, 250
AsuHPI	GGTGA	2 cut(s)	251, 515
AvaII	GGWCC	2 cut(s)	175, 485
BanII	GRGCYC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	1031
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	502, 829
BccI	CCATC	3 cut(s)	75, 362, 407
BceAI	ACGGC	3 cut(s)	247, 298, 312
BciT130I	CCWGG	2 cut(s)	774, 1053
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	2 cut(s)	97, 250
BcoDI	GTCTC	4 cut(s)	250, 287, 691, 860
BfaI	CTAG	3 cut(s)	596, 645, 1020
BfoI	RGCGCY	1 cut(s)	664
BisI	GCNGC	4 cut(s)	154, 280, 516, 843
BlsI	GCNGC	4 cut(s)	155, 281, 517, 844
Bme1390I	CCNGG	4 cut(s)	97, 250, 774, 1053
Bme18I	GGWCC	2 cut(s)	175, 485
BmgT120I	GGNCC	5 cut(s)	99, 175, 485, 880, 960
BmiI	GGNNCC	3 cut(s)	101, 235, 978
BmrFI	CCNGG	4 cut(s)	97, 250, 774, 1053
BmrI	ACTGGG	1 cut(s)	982
BmsI	GCATC	2 cut(s)	527, 528
BmuI	ACTGGG	1 cut(s)	982
BoxI	GACNNNNGTC	1 cut(s)	987
BpiI	GAAGAC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	2 cut(s)	97, 250
BsaAI	YACGTR	1 cut(s)	1031
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	192, 258, 314
BsaWI	WCCGGW	2 cut(s)	236, 923
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 270, 670, 762, 779
Bse118I	RCCGGY	2 cut(s)	149, 263
Bse1I	ACTGG	1 cut(s)	977
BseBI	CCWGG	2 cut(s)	774, 1053
BseDI	CCNNGG	3 cut(s)	192, 258, 314
BseGI	GGATG	2 cut(s)	67, 418
BseLI	CCNNNNNNNGG	5 cut(s)	224, 270, 670, 762, 779
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	1 cut(s)	977
BseRI	GAGGAG	8 cut(s)	5, 46, 342, 350, 416, 419, 422, 446
BseX3I	CGGCCG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	502, 829
Bsh1236I	CGCG	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	314
BshFI	GGCC	5 cut(s)	100, 263, 313, 882, 962
BsiEI	CGRYCG	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	7 cut(s)	97, 150, 173, 237, 249, 264, 924
BslFI	GGGAC	4 cut(s)	60, 265, 902, 1037
BslI	CCNNNNNNNGG	5 cut(s)	224, 270, 670, 762, 779
BsmAI	GTCTC	4 cut(s)	250, 287, 691, 860
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	4 cut(s)	60, 265, 902, 1037
BsnI	GGCC	5 cut(s)	100, 263, 313, 882, 962
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	214, 525, 832
BspACI	CCGC	6 cut(s)	153, 170, 271, 279, 299, 912
BspANI	GGCC	5 cut(s)	100, 263, 313, 882, 962
BspCNI	CTCAG	1 cut(s)	856
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	101, 235, 978
BspPI	GGATC	2 cut(s)	209, 533
BspQI	GCTCTTC	1 cut(s)	1067
BspTNI	GGTCTC	1 cut(s)	250
BsrFI	RCCGGY	2 cut(s)	149, 263
BsrI	ACTGG	1 cut(s)	977
BssAI	RCCGGY	2 cut(s)	149, 263
BssECI	CCNNGG	3 cut(s)	192, 258, 314
BssMI	GATC	3 cut(s)	214, 525, 832
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	774, 1053
Bst4CI	ACNGT	3 cut(s)	548, 807, 904
Bst6I	CTCTTC	2 cut(s)	416, 1067
BstBAI	YACGTR	1 cut(s)	1031
BstDEI	CTNAG	2 cut(s)	438, 864
BstDSI	CCRYGG	1 cut(s)	314
BstEII	GGTNACC	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	67, 418
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	3 cut(s)	217, 528, 835
BstMAI	GTCTC	4 cut(s)	250, 287, 691, 860
BstMBI	GATC	3 cut(s)	214, 525, 832
BstMCI	CGRYCG	1 cut(s)	314
BstNI	CCWGG	2 cut(s)	774, 1053
BstPAI	GACNNNNGTC	1 cut(s)	987
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	4 cut(s)	95, 248, 772, 1051
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	502, 829
BstV2I	GAAGAC	1 cut(s)	615
BstZI	CGGCCG	1 cut(s)	311
BsuRI	GGCC	5 cut(s)	100, 263, 313, 882, 962
BtgI	CCRYGG	1 cut(s)	314
BtgZI	GCGATG	2 cut(s)	297, 381
BtsCI	GGATG	2 cut(s)	67, 418
BtsI	GCAGTG	2 cut(s)	468, 754
BtsIMutI	CAGTG	2 cut(s)	468, 754
CfoI	GCGC	1 cut(s)	663
Cfr10I	RCCGGY	2 cut(s)	149, 263
Cfr13I	GGNCC	5 cut(s)	99, 175, 485, 880, 960
CseI	GACGC	1 cut(s)	977
CviAII	CATG	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	438, 864
DpnI	GATC	3 cut(s)	216, 527, 834
DpnII	GATC	3 cut(s)	214, 525, 832
DrdI	GACNNNNNNGTC	1 cut(s)	924
DseDI	GACNNNNNNGTC	1 cut(s)	924
EaeI	YGGCCR	1 cut(s)	311
EagI	CGGCCG	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	416, 1067
EarI	CTCTTC	2 cut(s)	416, 1067
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	466
EclXI	CGGCCG	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	175, 485
Eco52I	CGGCCG	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	466
Eco72I	CACGTG	1 cut(s)	1031
Eco91I	GGTNACC	1 cut(s)	503
EcoICRI	GAGCTC	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	960
EcoO65I	GGTNACC	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	772, 1051
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	1 cut(s)	75
FaiI	YATR	3 cut(s)	73, 656, 726
FaqI	GGGAC	4 cut(s)	60, 265, 902, 1037
FatI	CATG	1 cut(s)	71
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	4 cut(s)	154, 280, 516, 843
FokI	GGATG	2 cut(s)	54, 425
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	154, 280, 516, 843
FspBI	CTAG	3 cut(s)	596, 645, 1020
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	4 cut(s)	154, 280, 516, 843
HaeII	RGCGCY	1 cut(s)	664
HaeIII	GGCC	5 cut(s)	100, 263, 313, 882, 962
HapII	CCGG	7 cut(s)	97, 150, 173, 237, 249, 264, 924
HgaI	GACGC	1 cut(s)	977
HhaI	GCGC	1 cut(s)	663
Hin1II	CATG	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	1002
HinfI	GANTC	6 cut(s)	51, 87, 138, 766, 918, 1025
HpaII	CCGG	7 cut(s)	97, 150, 173, 237, 249, 264, 924
HphI	GGTGA	2 cut(s)	251, 515
Hpy166II	GTNNAC	2 cut(s)	706, 917
Hpy188I	TCNGA	2 cut(s)	624, 865
Hpy188III	TCNNGA	4 cut(s)	181, 645, 763, 1015
Hpy8I	GTNNAC	2 cut(s)	706, 917
Hpy99I	CGWCG	3 cut(s)	161, 206, 233
HpyAV	CCTTC	7 cut(s)	136, 268, 448, 454, 556, 732, 860
HpyCH4III	ACNGT	3 cut(s)	548, 807, 904
HpyCH4IV	ACGT	2 cut(s)	31, 1030
HpyCH4V	TGCA	6 cut(s)	497, 518, 557, 747, 900, 967
HpyF3I	CTNAG	2 cut(s)	438, 864
HpySE526I	ACGT	2 cut(s)	31, 1030
Hsp92II	CATG	1 cut(s)	75
HspAI	GCGC	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	3 cut(s)	214, 525, 832
LguI	GCTCTTC	1 cut(s)	1067
LmnI	GCTCC	4 cut(s)	239, 318, 463, 935
Lsp1109I	GCAGC	2 cut(s)	502, 829
LweI	GCATC	2 cut(s)	527, 528
MaeI	CTAG	3 cut(s)	596, 645, 1020
MaeII	ACGT	2 cut(s)	31, 1030
MaeIII	GTNAC	2 cut(s)	503, 782
MalI	GATC	3 cut(s)	216, 527, 834
MboI	GATC	3 cut(s)	214, 525, 832
MboII	GAAGA	6 cut(s)	133, 352, 433, 620, 747, 1084
MfeI	CAATTG	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	5 cut(s)	62, 208, 603, 895, 944
MlyI	GAGTC	2 cut(s)	912, 1019
MmeI	TCCRAC	1 cut(s)	913
MroXI	GAANNNNTTC	2 cut(s)	612, 1076
MseI	TTAA	1 cut(s)	480
MspI	CCGG	7 cut(s)	97, 150, 173, 237, 249, 264, 924
MspR9I	CCNGG	4 cut(s)	97, 250, 774, 1053
MunI	CAATTG	1 cut(s)	895
MvaI	CCWGG	2 cut(s)	774, 1053
MvnI	CGCG	1 cut(s)	271
NciI	CCSGG	2 cut(s)	97, 250
NdeII	GATC	3 cut(s)	214, 525, 832
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	3 cut(s)	101, 235, 978
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	1067
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	2 cut(s)	612, 1076
PfeI	GAWTC	4 cut(s)	51, 87, 138, 766
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	155, 281, 517, 844
PleI	GAGTC	2 cut(s)	912, 1019
PmaCI	CACGTG	1 cut(s)	1031
PmlI	CACGTG	1 cut(s)	1031
PpsI	GAGTC	2 cut(s)	912, 1019
Ppu21I	YACGTR	1 cut(s)	1031
PshAI	GACNNNNGTC	1 cut(s)	987
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	772, 1051
PspCI	CACGTG	1 cut(s)	1031
PspEI	GGTNACC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	772, 1051
PspN4I	GGNNCC	3 cut(s)	101, 235, 978
PspPI	GGNCC	5 cut(s)	99, 175, 485, 880, 960
SacI	GAGCTC	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	1067
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	4 cut(s)	154, 280, 516, 843
Sau3AI	GATC	3 cut(s)	214, 525, 832
Sau96I	GGNCC	5 cut(s)	99, 175, 485, 880, 960
SchI	GAGTC	2 cut(s)	912, 1019
ScrFI	CCNGG	4 cut(s)	97, 250, 774, 1053
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	2 cut(s)	527, 528
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	2 cut(s)	175, 485
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	5 cut(s)	62, 208, 603, 895, 944
SsiI	CCGC	6 cut(s)	153, 170, 271, 279, 299, 912
SspMI	CTAG	3 cut(s)	596, 645, 1020
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	4 cut(s)	95, 248, 772, 1051
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	548, 807, 904
TaiI	ACGT	2 cut(s)	34, 1033
TaqI	TCGA	2 cut(s)	213, 376
TasI	AATT	5 cut(s)	62, 208, 603, 895, 944
TauI	GCSGC	2 cut(s)	156, 282
TfiI	GAWTC	4 cut(s)	51, 87, 138, 766
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	2 cut(s)	475, 754
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	2 cut(s)	515, 842
Tsp45I	GTSAC	1 cut(s)	503
TspRI	CASTG	2 cut(s)	475, 754
VpaK11BI	GGWCC	2 cut(s)	175, 485
XapI	RAATTY	2 cut(s)	62, 208
XbaI	TCTAGA	1 cut(s)	644
XmnI	GAANNNNTTC	2 cut(s)	612, 1076
XspI	CTAG	3 cut(s)	596, 645, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.