Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013162

Physical Location & Seq

Genomic Coordinates Reverse (-)

9960129 .. 9961574

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTACGTGTCGTGGCTTGATCAGCCCATAACTGATCGGACTTTTTCAAGCCTCTGCTTCATCACCATGCTCTCTCGGCTTCTGCCCAAACCCTCACATTTCTCTCGCCTAACCCTAATCTCCCCAAAGTTCCATCCCTTCCCCCAACCCCAAAACCCCCTTTTCACTACTTTCACTCCAAGGTTCTTCTCCGGTGACGATGGTCAGGGTCCCTCCCAATCAGATGTTTGGAGGCTTTCTCAGGAAACCGATGGAAAGTTCGACCCTTTATTCGGCGAGAGCTCCGGGGACGTTTCCGGGATTGCAGAAGTTGAGTCCAGCGAGGCCGATTCCGATTGGTTGAAGGGGAGAGCAGGCGATGAGTGGGGTACATCGCAGGAGTACAAGCTGTGGGGCATGGGAGAGGAGGAGAAGAGTGACTTGTTCGATATTGGAGAGGGTGTACAGACTGTTACCGCCATTGACGGTGAGACAAGTAGAGAGGAGATTGAGAAGGCTGAACAGGCTAAGAGGCTTGAGAAAGAGGAGCGGGAGCTTACTGCTGTTCTCAAAGGTCCGAATCGTGCCTTTGGTGACCTTATTGCTGCATCTGGAATCACAGATGAAATGCTTGACACTTTGATTGCATTGAAGGATTTTCAAGGGATAAAGGGATTGCCCCCTCTATCAGAGATTGAAGACATTCGTTATGAGAAAAATACCAGAAAATCCTCGAGAGCTGAAATAGAGCGCCAGAAACAGGAGGAAGTTGCCAAAGCAAGAGTGAGAACAGTAGACGACAAGGGGAGAGCTTATGGAACAGGAAGAAGGAAATGCAGTGTAGCACGTGTCTGGATTCAACCTGGTAATGGTAAATTCACAATCAATGATAAACAATTTGACACCTATTTTCCAATGCTTGATCGATCGTGCTGCTCTCCTCCGACCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009987 GO:0010467 GO:0015935 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030154 GO:0030490 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

312

Amino Acids

35.03

Weight (kDa)

4.97

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49080
fragaria_vesca	FvH4_6g32580
malus_domestica	MD09G1200300.v1.1 MD15G1412900.v1.1
prunus_persica	Prupe.3G056900_v2.0.a1
pyrus_communis	pycom09g11790 pycom15g36770
rosa_chinensis	RchiOBHm_Chr2g0141031
rosa_laevigata	RLG00000019909
rosa_multiflora	Rmu_sc0004769.1_g000015 Rmu_sc0012897.1_g000007
rosa_roxburghii	Rroxscaffold_2G00104270
rosa_rugosa	Rorug02G0366200
rosa_samantha	Rh2AG417600 Rh2BG427500 Rh2CG403900 Rh2DG437000
rosa_wichuraiana	Rw2G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	774
AciI	CCGC	2 cut(s)	456, 529
AcsI	RAATTY	1 cut(s)	854
AcvI	CACGTG	1 cut(s)	827
AfaI	GTAC	4 cut(s)	5, 370, 383, 444
AfiI	CCNNNNNNNGG	3 cut(s)	272, 739, 848
AflIII	ACRYGT	2 cut(s)	6, 826
AgsI	TTSAA	6 cut(s)	48, 343, 631, 641, 677, 839
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	5 cut(s)	282, 388, 535, 719, 791
AluI	AGCT	5 cut(s)	282, 388, 535, 719, 791
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	712
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	584, 912
ApoI	RAATTY	1 cut(s)	854
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	2 cut(s)	209, 554
AsuC2I	CCSGG	2 cut(s)	286, 298
AsuHPI	GGTGA	4 cut(s)	55, 206, 479, 584
AvaI	CYCGRG	1 cut(s)	712
AvaII	GGWCC	2 cut(s)	209, 554
BanII	GRGCYC	1 cut(s)	284
BbrPI	CACGTG	1 cut(s)	827
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	571, 899
BccI	CCATC	3 cut(s)	141, 194, 245
BcgI	CGANNNNNNTGC	2 cut(s)	894, 928
BciT130I	CCWGG	1 cut(s)	843
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	286, 298
BcoDI	GTCTC	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	733
BisI	GCNGC	2 cut(s)	585, 913
BlsI	GCNGC	2 cut(s)	586, 914
Bme1390I	CCNGG	3 cut(s)	286, 298, 843
Bme18I	GGWCC	2 cut(s)	209, 554
BmeT110I	CYCGRG	1 cut(s)	712
BmgT120I	GGNCC	2 cut(s)	209, 554
BmiI	GGNNCC	2 cut(s)	210, 211
BmrFI	CCNGG	3 cut(s)	286, 298, 843
BmsI	GCATC	1 cut(s)	596
BoxI	GACNNNNGTC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	684
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	286, 298
Bsa29I	ATCGAT	1 cut(s)	904
BsaAI	YACGTR	2 cut(s)	7, 827
BsaJI	CCNNGG	2 cut(s)	179, 285
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 426, 456
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 739, 848
BseBI	CCWGG	1 cut(s)	843
BseCI	ATCGAT	1 cut(s)	904
BseDI	CCNNGG	2 cut(s)	179, 285
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	3 cut(s)	272, 739, 848
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	5 cut(s)	419, 422, 497, 539, 909
BseXI	GCAGC	2 cut(s)	571, 899
Bsh1285I	CGRYCG	1 cut(s)	908
BshFI	GGCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	904
BsiEI	CGRYCG	1 cut(s)	908
BsiHKAI	GWGCWC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	712
BsiSI	CCGG	3 cut(s)	192, 285, 297
BslFI	GGGAC	2 cut(s)	195, 302
BslI	CCNNNNNNNGG	3 cut(s)	272, 739, 848
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	195, 302
BsnI	GGCC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	712
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	4 cut(s)	19, 34, 901, 905
BspACI	CCGC	2 cut(s)	456, 529
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	210, 211
BsrBI	CCGCTC	1 cut(s)	529
BsrGI	TGTACA	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	179, 285
BssMI	GATC	4 cut(s)	19, 34, 901, 905
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	3 cut(s)	451, 467, 772
Bst6I	CTCTTC	1 cut(s)	407
BstAUI	TGTACA	1 cut(s)	442
BstBAI	YACGTR	2 cut(s)	7, 827
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	240, 507
BstEII	GGTNACC	1 cut(s)	572
BstF5I	GGATG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	733
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	4 cut(s)	22, 37, 904, 908
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	4 cut(s)	19, 34, 901, 905
BstMCI	CGRYCG	1 cut(s)	908
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 76, 503
BstNI	CCWGG	1 cut(s)	843
BstPAI	GACNNNNGTC	1 cut(s)	201
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	3 cut(s)	284, 296, 841
BstV1I	GCAGC	2 cut(s)	571, 899
BstV2I	GAAGAC	1 cut(s)	684
Bsu15I	ATCGAT	1 cut(s)	904
BsuRI	GGCC	1 cut(s)	326
BsuTUI	ATCGAT	1 cut(s)	904
BtgZI	GCGATG	2 cut(s)	357, 372
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	1 cut(s)	355
CfoI	GCGC	1 cut(s)	732
Cfr13I	GGNCC	2 cut(s)	209, 554
ClaI	ATCGAT	1 cut(s)	904
CsiI	ACCWGGT	1 cut(s)	841
Csp6I	GTAC	4 cut(s)	4, 369, 382, 443
CviAII	CATG	2 cut(s)	67, 397
CviQI	GTAC	4 cut(s)	4, 369, 382, 443
DdeI	CTNAG	2 cut(s)	240, 507
DpnI	GATC	4 cut(s)	21, 36, 903, 907
DpnII	GATC	4 cut(s)	19, 34, 901, 905
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	209, 554
Eco53kI	GAGCTC	1 cut(s)	282
Eco72I	CACGTG	1 cut(s)	827
Eco88I	CYCGRG	1 cut(s)	712
Eco91I	GGTNACC	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	70, 400
FaiI	YATR	5 cut(s)	29, 68, 398, 690, 795
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	2 cut(s)	195, 302
FatI	CATG	2 cut(s)	66, 396
FauI	CCCGC	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	2 cut(s)	585, 913
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	585, 913
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	2 cut(s)	585, 913
HaeII	RGCGCY	1 cut(s)	733
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	3 cut(s)	192, 285, 297
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	2 cut(s)	70, 400
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HinfI	GANTC	5 cut(s)	314, 329, 559, 594, 835
HpaII	CCGG	3 cut(s)	192, 285, 297
HphI	GGTGA	4 cut(s)	55, 206, 479, 584
Hpy166II	GTNNAC	2 cut(s)	443, 775
Hpy188I	TCNGA	7 cut(s)	39, 223, 334, 558, 670, 924, 935
Hpy188III	TCNNGA	4 cut(s)	242, 591, 714, 832
Hpy8I	GTNNAC	2 cut(s)	443, 775
HpyAV	CCTTC	5 cut(s)	148, 337, 487, 625, 801
HpyCH4III	ACNGT	3 cut(s)	451, 467, 772
HpyCH4IV	ACGT	3 cut(s)	6, 291, 826
HpyCH4V	TGCA	4 cut(s)	305, 587, 626, 816
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 76, 503
HpyF3I	CTNAG	2 cut(s)	240, 507
HpySE526I	ACGT	3 cut(s)	6, 291, 826
Hsp92II	CATG	2 cut(s)	70, 400
HspAI	GCGC	1 cut(s)	730
KflI	GGGWCCC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	19, 34, 901, 905
LmnI	GCTCC	3 cut(s)	287, 526, 532
Lsp1109I	GCAGC	2 cut(s)	571, 899
LweI	GCATC	1 cut(s)	596
MabI	ACCWGGT	1 cut(s)	841
MaeII	ACGT	3 cut(s)	6, 291, 826
MaeIII	GTNAC	4 cut(s)	194, 416, 451, 572
MalI	GATC	4 cut(s)	21, 36, 903, 907
MbiI	CCGCTC	1 cut(s)	529
MboI	GATC	4 cut(s)	19, 34, 901, 905
MboII	GAAGA	4 cut(s)	178, 424, 689, 816
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	2 cut(s)	854, 875
MlyI	GAGTC	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	3 cut(s)	192, 285, 297
MspR9I	CCNGG	3 cut(s)	286, 298, 843
MvaI	CCWGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	3 cut(s)	22, 76, 503
NciI	CCSGG	2 cut(s)	286, 298
NdeII	GATC	4 cut(s)	19, 34, 901, 905
NlaIII	CATG	2 cut(s)	70, 400
NlaIV	GGNNCC	2 cut(s)	210, 211
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	3 cut(s)	194, 416, 572
PaeR7I	CTCGAG	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	4 cut(s)	329, 559, 594, 835
PfoI	TCCNGGA	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	586, 914
Ple19I	CGATCG	1 cut(s)	908
PleI	GAGTC	1 cut(s)	322
PmaCI	CACGTG	1 cut(s)	827
PmlI	CACGTG	1 cut(s)	827
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	2 cut(s)	7, 827
PpuMI	RGGWCCY	1 cut(s)	209
PshAI	GACNNNNGTC	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	841
PspCI	CACGTG	1 cut(s)	827
PspEI	GGTNACC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	2 cut(s)	210, 211
PspPI	GGNCC	2 cut(s)	209, 554
PspPPI	RGGWCCY	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	908
RsaI	GTAC	4 cut(s)	5, 370, 383, 444
RsaNI	GTAC	4 cut(s)	4, 369, 382, 443
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	284
SatI	GCNGC	2 cut(s)	585, 913
Sau3AI	GATC	4 cut(s)	19, 34, 901, 905
Sau96I	GGNCC	2 cut(s)	209, 554
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	3 cut(s)	286, 298, 843
SduI	GDGCHC	1 cut(s)	284
SexAI	ACCWGGT	1 cut(s)	841
SfaNI	GCATC	1 cut(s)	596
Sfr274I	CTCGAG	1 cut(s)	712
SinI	GGWCC	2 cut(s)	209, 554
SlaI	CTCGAG	1 cut(s)	712
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	515, 712
SmoI	CTYRAG	2 cut(s)	515, 712
Sse9I	AATT	2 cut(s)	854, 875
SsiI	CCGC	2 cut(s)	456, 529
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	3 cut(s)	284, 296, 841
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	451, 467, 772
TaiI	ACGT	3 cut(s)	9, 294, 829
TaqI	TCGA	4 cut(s)	261, 426, 713, 904
TasI	AATT	2 cut(s)	854, 875
TatI	WGTACW	2 cut(s)	381, 442
TfiI	GAWTC	4 cut(s)	329, 559, 594, 835
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	3 cut(s)	194, 416, 572
TseI	GCWGC	2 cut(s)	584, 912
Tsp45I	GTSAC	3 cut(s)	194, 416, 572
TspDTI	ATGAA	2 cut(s)	49, 618
TspRI	CASTG	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	209, 554
XapI	RAATTY	1 cut(s)	854
XhoI	CTCGAG	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	774
XmnI	GAANNNNTTC	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.