Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013162

Physical Location & Seq

Genomic Coordinates Reverse (-)

4038257 .. 4041216

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G056900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCTCTCTCGTCTGCTCCCCAAACCCTCCCATTTCTCTCGCCTAACCCTAATCTCCTCAAAGTTCCACCCACCTCCCCAACCCCAAAACCCTGTTTTCACTACCTTCGTGCCGAGGTTCTTCTCAAGTGACAATGGCAAGGGCCCCTCCCAATCCGATGTTTGGAAACTTTCTCAGGAAACTGATGGAAAGTTCGACCCTTTGTTCGGTGAGATCTCCGGGGACGTTTCCGGAGTCGCCGATTCCGGCGAGGCTGGCGAGGCAGATTCGTGGTTGAAAGAGAAAGGCGGGGAGGAGTGGGAGACGGTGGCGGGGTACAAGCCTTGGAGCTTGGGAGAGGAGGAGAAGAGTGACTTGTTCGATATCGGTGAGGGTGTACAGACTGTTGCTGCAACCGACGGTGAGATTCGCAGGGGCAGTAGAGAGGAGATTGAGAAGGCTGAGGAGGCTAAGAGGCTTGAGAAAGAGGAGCAGGAGCTCACTGCTGTTCTCAAAGGTCCAAATCGTGCATTTGGTGACCTTGTTGCTGCATCTGGAATCACAGATGAAATGCTTGACACTTTGATTGCATTGAAGGATTTTCAAGGGATAAATGGATTGCCCCCTCTAAGAGAAATAGAAGACATTCGTTATGAGAAAAGTACCAGAAAATCCTCAAGAGCTGAAATAGAGCGCCAGAAACAGGAGGAAGCTGCAAAAGCAAGAGTGAGACAAGTAGACGACAAGGGGAGAGCTTATGGAACAGGAAGAAGGAAATGCAGTGTAGCACGTGTCTGGATTCAACCTGGTGATGGGAAATTCACGATTAATGATAAACAATTTGATGTCTATTTCCCAATGCTTGACCATCGTGCTGCCCTTCTTCGACCTTTCTCTGAGACAAAAACATTGGGCCTTTGGGACATCGAGTGTACTGTTCAAGGAGGTGGCACCACAGGTCAAGTTGGAGCAATTCAATTAGGAGTAAGCAGGGCCTTGCAAAATTGGGAACCCGACTTGCGTCCTGCACTAAGAGATTCTGGTTTCTTGACAAGGGACTCACGTGTGGTGGAAAGGAAAAAACCAGGAAAAGCAAAGGCAAGGAAGAGCTTCCAATGGGTCAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009987 GO:0010467 GO:0015935 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030154 GO:0030490 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

370

Amino Acids

41.17

Weight (kDa)

6.44

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49080
fragaria_vesca	FvH4_6g32580
malus_domestica	MD09G1200300.v1.1 MD15G1412900.v1.1
prunus_persica	Prupe.3G056900_v2.0.a1
pyrus_communis	pycom09g11790 pycom15g36770
rosa_chinensis	RchiOBHm_Chr2g0141031
rosa_laevigata	RLG00000019909
rosa_multiflora	Rmu_sc0004769.1_g000015 Rmu_sc0012897.1_g000007
rosa_roxburghii	Rroxscaffold_2G00104270
rosa_rugosa	Rorug02G0366200
rosa_samantha	Rh2AG417600 Rh2BG427500 Rh2CG403900 Rh2DG437000
rosa_wichuraiana	Rw2G034180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	929
AccI	GTMKAC	1 cut(s)	717
AccIII	TCCGGA	1 cut(s)	230
AciI	CCGC	2 cut(s)	288, 311
AcsI	RAATTY	1 cut(s)	797
AcvI	CACGTG	2 cut(s)	770, 1043
AfaI	GTAC	4 cut(s)	317, 378, 643, 913
AfiI	CCNNNNNNNGG	4 cut(s)	162, 206, 682, 791
AflIII	ACRYGT	2 cut(s)	769, 1042
AgsI	TTSAA	6 cut(s)	277, 574, 584, 782, 920, 956
AjnI	CCWGG	2 cut(s)	784, 1063
AluBI	AGCT	6 cut(s)	330, 478, 662, 692, 734, 1089
AluI	AGCT	6 cut(s)	330, 478, 662, 692, 734, 1089
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	3 cut(s)	296, 703, 872
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	3 cut(s)	142, 892, 972
ApaI	GGGCCC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	389, 527, 692, 854
ApoI	RAATTY	1 cut(s)	797
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	2 cut(s)	624, 1088
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	5 cut(s)	142, 143, 497, 892, 972
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	5 cut(s)	221, 380, 413, 527, 800
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	929
BanII	GRGCYC	2 cut(s)	146, 480
BbrPI	CACGTG	2 cut(s)	770, 1043
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	4 cut(s)	376, 514, 679, 841
BccI	CCATC	3 cut(s)	179, 785, 855
BciT130I	CCWGG	2 cut(s)	786, 1065
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	296, 703, 872
BfoI	RGCGCY	1 cut(s)	676
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	4 cut(s)	390, 528, 693, 855
BlsI	GCNGC	4 cut(s)	391, 529, 694, 856
Bme1390I	CCNGG	3 cut(s)	220, 786, 1065
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	5 cut(s)	142, 143, 497, 892, 972
BmiI	GGNNCC	4 cut(s)	144, 145, 931, 990
BmrFI	CCNGG	3 cut(s)	220, 786, 1065
BmsI	GCATC	1 cut(s)	539
BoxI	GACNNNNGTC	1 cut(s)	999
BpiI	GAAGAC	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	3 cut(s)	109, 479, 640
BpuMI	CCSGG	1 cut(s)	220
BsaAI	YACGTR	2 cut(s)	770, 1043
BsaJI	CCNNGG	3 cut(s)	113, 219, 323
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 206, 682, 791
BseAI	TCCGGA	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	786, 1065
BseDI	CCNNGG	3 cut(s)	113, 219, 323
BseLI	CCNNNNNNNGG	4 cut(s)	162, 206, 682, 791
BseMII	CTCAG	3 cut(s)	188, 432, 867
BseRI	GAGGAG	7 cut(s)	46, 308, 353, 356, 440, 458, 482
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	376, 514, 679, 841
BsgI	GTGCAG	1 cut(s)	990
BshFI	GGCC	3 cut(s)	144, 894, 974
BshNI	GGYRCC	1 cut(s)	929
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	3 cut(s)	219, 231, 246
BslFI	GGGAC	3 cut(s)	236, 914, 1049
BslI	CCNNNNNNNGG	4 cut(s)	162, 206, 682, 791
BsmAI	GTCTC	3 cut(s)	296, 703, 872
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	3 cut(s)	236, 914, 1049
BsnI	GGCC	3 cut(s)	144, 894, 974
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	146, 480
Bsp13I	TCCGGA	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	288, 311
BspANI	GGCC	3 cut(s)	144, 894, 974
BspCNI	CTCAG	3 cut(s)	187, 433, 868
BspEI	TCCGGA	1 cut(s)	230
BspLI	GGNNCC	4 cut(s)	144, 145, 931, 990
BspQI	GCTCTTC	1 cut(s)	1079
BspT107I	GGYRCC	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	376
BssECI	CCNNGG	3 cut(s)	113, 219, 323
BssMI	GATC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	2 cut(s)	786, 1065
Bst4CI	ACNGT	4 cut(s)	307, 385, 401, 916
Bst6I	CTCTTC	2 cut(s)	341, 1079
BstAUI	TGTACA	1 cut(s)	376
BstBAI	YACGTR	2 cut(s)	770, 1043
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	6 cut(s)	174, 441, 450, 608, 876, 1010
BstEII	GGTNACC	1 cut(s)	515
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	3 cut(s)	296, 703, 872
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 260, 446, 698
BstNI	CCWGG	2 cut(s)	786, 1065
BstPAI	GACNNNNGTC	1 cut(s)	999
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	218, 784, 1063
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	376, 514, 679, 841
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	144, 894, 974
BtsI	GCAGTG	2 cut(s)	480, 766
BtsIMutI	CAGTG	2 cut(s)	480, 766
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	1 cut(s)	675
Cfr13I	GGNCC	5 cut(s)	142, 143, 497, 892, 972
CseI	GACGC	1 cut(s)	989
CsiI	ACCWGGT	1 cut(s)	784
Csp6I	GTAC	4 cut(s)	316, 377, 642, 912
CviQI	GTAC	4 cut(s)	316, 377, 642, 912
DdeI	CTNAG	6 cut(s)	174, 441, 450, 608, 876, 1010
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	2 cut(s)	341, 1079
EarI	CTCTTC	2 cut(s)	341, 1079
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	2 cut(s)	146, 480
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	478
Eco72I	CACGTG	2 cut(s)	770, 1043
Eco91I	GGTNACC	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	478
EcoO109I	RGGNCCY	3 cut(s)	142, 143, 972
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	784, 1063
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	2 cut(s)	146, 480
ErhI	CCWWGG	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	296
FaiI	YATR	2 cut(s)	633, 738
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	3 cut(s)	236, 914, 1049
FauI	CCCGC	2 cut(s)	281, 304
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	4 cut(s)	390, 528, 693, 855
FriOI	GRGCYC	2 cut(s)	146, 480
Fsp4HI	GCNGC	4 cut(s)	390, 528, 693, 855
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	4 cut(s)	390, 528, 693, 855
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	144, 894, 974
HapII	CCGG	3 cut(s)	219, 231, 246
HgaI	GACGC	1 cut(s)	989
HhaI	GCGC	1 cut(s)	675
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HinfI	GANTC	8 cut(s)	234, 242, 266, 406, 537, 778, 1016, 1037
HpaII	CCGG	3 cut(s)	219, 231, 246
HphI	GGTGA	5 cut(s)	221, 380, 413, 527, 800
Hpy166II	GTNNAC	3 cut(s)	377, 718, 912
Hpy188I	TCNGA	2 cut(s)	157, 877
Hpy188III	TCNNGA	7 cut(s)	176, 231, 534, 657, 775, 802, 1027
Hpy8I	GTNNAC	3 cut(s)	377, 718, 912
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	5 cut(s)	115, 430, 568, 744, 869
HpyCH4III	ACNGT	4 cut(s)	307, 385, 401, 916
HpyCH4IV	ACGT	3 cut(s)	225, 769, 1042
HpyCH4V	TGCA	8 cut(s)	392, 509, 530, 569, 695, 759, 979, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 260, 446, 698
HpyF3I	CTNAG	6 cut(s)	174, 441, 450, 608, 876, 1010
HpySE526I	ACGT	3 cut(s)	225, 769, 1042
HspAI	GCGC	1 cut(s)	673
Kpn2I	TCCGGA	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	213
LguI	GCTCTTC	1 cut(s)	1079
LmnI	GCTCC	5 cut(s)	21, 327, 469, 475, 947
Lsp1109I	GCAGC	4 cut(s)	376, 514, 679, 841
LweI	GCATC	1 cut(s)	539
MabI	ACCWGGT	1 cut(s)	784
MaeII	ACGT	3 cut(s)	225, 769, 1042
MaeIII	GTNAC	3 cut(s)	128, 350, 515
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	6 cut(s)	112, 358, 632, 759, 854, 1096
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	146, 480
MluCI	AATT	5 cut(s)	797, 818, 951, 956, 982
MlyI	GAGTC	2 cut(s)	243, 1031
MmeI	TCCRAC	1 cut(s)	925
MroI	TCCGGA	1 cut(s)	230
MroXI	GAANNNNTTC	2 cut(s)	624, 1088
MseI	TTAA	1 cut(s)	807
MspI	CCGG	3 cut(s)	219, 231, 246
MspR9I	CCNGG	3 cut(s)	220, 786, 1065
MvaI	CCWGG	2 cut(s)	786, 1065
MwoI	GCNNNNNNNGC	4 cut(s)	255, 260, 446, 698
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	1 cut(s)	213
NlaIV	GGNNCC	4 cut(s)	144, 145, 931, 990
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	3 cut(s)	128, 350, 515
PciSI	GCTCTTC	1 cut(s)	1079
PdmI	GAANNNNTTC	2 cut(s)	624, 1088
PfeI	GAWTC	6 cut(s)	242, 266, 406, 537, 778, 1016
PkrI	GCNGC	4 cut(s)	391, 529, 694, 856
PleI	GAGTC	2 cut(s)	242, 1031
PmaCI	CACGTG	2 cut(s)	770, 1043
PmlI	CACGTG	2 cut(s)	770, 1043
PpsI	GAGTC	2 cut(s)	242, 1031
Ppu21I	YACGTR	2 cut(s)	770, 1043
PshAI	GACNNNNGTC	1 cut(s)	999
PshBI	ATTAAT	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	784, 1063
PspCI	CACGTG	2 cut(s)	770, 1043
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	2 cut(s)	784, 1063
PspN4I	GGNNCC	4 cut(s)	144, 145, 931, 990
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	5 cut(s)	142, 143, 497, 892, 972
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	4 cut(s)	317, 378, 643, 913
RsaNI	GTAC	4 cut(s)	316, 377, 642, 912
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	1079
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	4 cut(s)	390, 528, 693, 855
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	5 cut(s)	142, 143, 497, 892, 972
SchI	GAGTC	2 cut(s)	243, 1031
ScrFI	CCNGG	3 cut(s)	220, 786, 1065
SduI	GDGCHC	2 cut(s)	146, 480
SexAI	ACCWGGT	1 cut(s)	784
SfaNI	GCATC	1 cut(s)	539
SinI	GGWCC	1 cut(s)	497
SmlI	CTYRAG	3 cut(s)	124, 458, 655
SmoI	CTYRAG	3 cut(s)	124, 458, 655
Sse9I	AATT	5 cut(s)	797, 818, 951, 956, 982
SsiI	CCGC	2 cut(s)	288, 311
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	218, 784, 1063
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	4 cut(s)	307, 385, 401, 916
TaiI	ACGT	3 cut(s)	228, 772, 1045
TaqI	TCGA	4 cut(s)	195, 360, 865, 906
TasI	AATT	5 cut(s)	797, 818, 951, 956, 982
TatI	WGTACW	2 cut(s)	376, 911
TfiI	GAWTC	6 cut(s)	242, 266, 406, 537, 778, 1016
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	2 cut(s)	487, 766
TseFI	GTSAC	3 cut(s)	128, 350, 515
TseI	GCWGC	4 cut(s)	389, 527, 692, 854
Tsp45I	GTSAC	3 cut(s)	128, 350, 515
TspDTI	ATGAA	1 cut(s)	561
TspRI	CASTG	2 cut(s)	487, 766
VpaK11BI	GGWCC	1 cut(s)	497
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	2 cut(s)	624, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.