Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

46518973 .. 46526357

Gene Structure 7385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAACGGCCGTATCAACGGTGAAGTCGTGGCACATATAGATCGTCGACTGACTTTCTATCAGTGGTTATTACAAGTCGGCGTGATCCTCTGGGATACTCATGACAACAATGGTGAGCAATATTGTCTTGGAGTGGGAGACGACTTTAGGGCGGTTTTCAGGCCCATTGTAAAGCATTTACAAAAGCTACATGATAAAGGCCAATTCAACGGCAACCTTATAGCATCTATCCGGATCCGTTCACAAATTGTTGGAAATAACCCTGAACGTCGAATCTTTGAAGTGGAGTTCACTGGAGATATGAATTTTGGAGGTGATAATTTCGAAATTGGTTTAAGGAGGGATTTGCAAGATCTTGAACATCTTGTCAGATCAGCGACAGCAGCAATGCCAGAGGGGAATCGGCCTGATTCGTTGAAACTTTATCTTCTTCCAGTTTTTCGGAGATATGTTTTCCAAGGGAACATAAGGGAGGAAGGTCGTTACTTTATCTACTTCAACCCTCTGTTTTACGATGGTGCTGACAGGAATCGTCTATACCATAAAGTATGGGAACTGCGTCGTAGAAGTGACGCTGAGTTTCAGCGTCATGTGACTCTGGCTAGTCAAGAAACTTCAATGATTCACTGGTACCATAGGATTCCATGCTACTTTGACGCCTACGGCATTCCGACGCTGTATCAACACCCGCTCTGGCATGTTTATAGAAATAGATCCTCCCCCCATTCCACATATGCAACAACTCCTAGTATAATTCGGTACTTGAGAAATGCCACCCATCACTACCAAGATTATTCAGTTGGAGCATTATCATCACAGGTCAATGACCAGCTATATAGATTGTTCCCGGATGCATGTCCCAAAATCTTCTTTGAGATAGTGAAAAATTTTCGAGGCGAAAATGGACGCAGATACTTTGGGATCGATTTGGTGACTTTTCTAAAAGATGGGCCGTTTGGTTTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009987 GO:0010467 GO:0015935 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0030154 GO:0030490 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

322

Amino Acids

37.98

Weight (kDa)

9.01

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	630
AccBSI	CCGCTC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	2 cut(s)	152, 689
AclWI	GGATC	5 cut(s)	79, 229, 242, 708, 929
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	2 cut(s)	304, 886
AcyI	GRCGYC	1 cut(s)	657
AfaI	GTAC	2 cut(s)	632, 761
AgsI	TTSAA	6 cut(s)	208, 281, 359, 418, 499, 618
AluBI	AGCT	2 cut(s)	187, 832
AluI	AGCT	2 cut(s)	187, 832
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	5 cut(s)	79, 229, 242, 708, 929
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	5 cut(s)	7, 161, 199, 404, 950
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	2 cut(s)	304, 886
Asp718I	GGTACC	1 cut(s)	630
AspS9I	GGNCC	2 cut(s)	162, 950
AsuC2I	CCSGG	1 cut(s)	848
AsuHPI	GGTGA	5 cut(s)	32, 125, 326, 943, 955
AsuII	TTCGAA	1 cut(s)	324
BaeI	ACNNNNGTAYC	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	3 cut(s)	509, 786, 941
BceAI	ACGGC	4 cut(s)	22, 226, 679, 937
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	848
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	603, 747
BfuI	GTATCC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	848
BmgT120I	GGNCC	2 cut(s)	162, 950
BmiI	GGNNCC	2 cut(s)	236, 632
BmrFI	CCNGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	233, 841
BpmI	CTGGAG	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	784
BpuMI	CCSGG	1 cut(s)	848
Bsa29I	ATCGAT	1 cut(s)	924
BsaHI	GRCGYC	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	231
Bse1I	ACTGG	3 cut(s)	298, 434, 632
Bse3DI	GCAATG	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	924
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	1 cut(s)	856
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	3 cut(s)	298, 434, 632
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	395
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	5 cut(s)	9, 163, 201, 406, 952
BshNI	GGYRCC	1 cut(s)	630
BshVI	ATCGAT	1 cut(s)	924
BsiEI	CGRYCG	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	232, 848
BslFI	GGGAC	1 cut(s)	843
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	843
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	5 cut(s)	9, 163, 201, 406, 952
Bsp119I	TTCGAA	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	7 cut(s)	40, 84, 234, 352, 371, 713, 921
BspACI	CCGC	2 cut(s)	152, 689
BspANI	GGCC	5 cut(s)	9, 163, 201, 406, 952
BspCNI	CTCAG	1 cut(s)	568
BspDI	ATCGAT	1 cut(s)	924
BspEI	TCCGGA	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	236, 632
BspPI	GGATC	5 cut(s)	79, 229, 242, 708, 929
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	630
BsrBI	CCGCTC	1 cut(s)	691
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	3 cut(s)	298, 434, 632
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	7 cut(s)	40, 84, 234, 352, 371, 713, 921
BssNI	GRCGYC	1 cut(s)	657
BssT1I	CCWWGG	1 cut(s)	457
Bst4CI	ACNGT	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	657
BstBI	TTCGAA	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	856
BstKTI	GATC	7 cut(s)	43, 87, 237, 355, 374, 716, 924
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	7 cut(s)	40, 84, 234, 352, 371, 713, 921
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	701, 858
BstSCI	CCNGG	1 cut(s)	846
BstV1I	GCAGC	1 cut(s)	395
BstX2I	RGATCY	3 cut(s)	234, 352, 713
BstYI	RGATCY	3 cut(s)	234, 352, 713
BstZI	CGGCCG	1 cut(s)	7
Bsu15I	ATCGAT	1 cut(s)	924
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	5 cut(s)	9, 163, 201, 406, 952
BsuTUI	ATCGAT	1 cut(s)	924
BtsCI	GGATG	1 cut(s)	856
BtsIMutI	CAGTG	3 cut(s)	68, 291, 625
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	162, 950
ClaI	ATCGAT	1 cut(s)	924
CseI	GACGC	6 cut(s)	548, 575, 581, 665, 682, 915
Csp6I	GTAC	2 cut(s)	631, 760
CviAII	CATG	6 cut(s)	101, 191, 590, 645, 698, 855
CviJI	RGCY	8 cut(s)	9, 163, 187, 201, 406, 602, 832, 952
CviKI_1	RGCY	8 cut(s)	9, 163, 187, 201, 406, 602, 832, 952
CviQI	GTAC	2 cut(s)	631, 760
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	7 cut(s)	42, 86, 236, 354, 373, 715, 923
DpnII	GATC	7 cut(s)	40, 84, 234, 352, 371, 713, 921
EaeI	YGGCCR	1 cut(s)	7
EagI	CGGCCG	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	457
Eco52I	CGGCCG	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	6 cut(s)	104, 194, 593, 648, 701, 858
FaqI	GGGAC	1 cut(s)	843
FatI	CATG	6 cut(s)	100, 190, 589, 644, 697, 854
FauI	CCCGC	1 cut(s)	696
FauNDI	CATATG	1 cut(s)	733
FblI	GTMKAC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	863
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	2 cut(s)	603, 747
GluI	GCNGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	5 cut(s)	9, 163, 201, 406, 952
HapII	CCGG	2 cut(s)	232, 848
HgaI	GACGC	6 cut(s)	548, 575, 581, 665, 682, 915
Hin1I	GRCGYC	1 cut(s)	657
Hin1II	CATG	6 cut(s)	104, 194, 593, 648, 701, 858
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HinfI	GANTC	7 cut(s)	273, 400, 410, 529, 595, 622, 640
HpaII	CCGG	2 cut(s)	232, 848
HphI	GGTGA	5 cut(s)	32, 125, 326, 943, 955
Hpy166II	GTNNAC	3 cut(s)	47, 242, 291
Hpy188I	TCNGA	3 cut(s)	371, 444, 672
Hpy188III	TCNNGA	4 cut(s)	101, 232, 356, 608
Hpy8I	GTNNAC	3 cut(s)	47, 242, 291
Hpy99I	CGWCG	4 cut(s)	48, 273, 564, 676
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	349, 737, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	576
HpySE526I	ACGT	1 cut(s)	268
Hsp92I	GRCGYC	1 cut(s)	657
Hsp92II	CATG	6 cut(s)	104, 194, 593, 648, 701, 858
Kpn2I	TCCGGA	1 cut(s)	231
KpnI	GGTACC	1 cut(s)	634
Kzo9I	GATC	7 cut(s)	40, 84, 234, 352, 371, 713, 921
LmnI	GCTCC	1 cut(s)	803
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	2 cut(s)	233, 841
MaeI	CTAG	2 cut(s)	603, 747
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	4 cut(s)	482, 569, 592, 931
MalI	GATC	7 cut(s)	42, 86, 236, 354, 373, 715, 923
MbiI	CCGCTC	1 cut(s)	691
MboI	GATC	7 cut(s)	40, 84, 234, 352, 371, 713, 921
MboII	GAAGA	3 cut(s)	419, 422, 859
MflI	RGATCY	3 cut(s)	234, 352, 713
MluCI	AATT	7 cut(s)	203, 246, 304, 319, 327, 753, 886
MlyI	GAGTC	1 cut(s)	589
MmeI	TCCRAC	3 cut(s)	232, 695, 781
MnlI	CCTC	8 cut(s)	98, 305, 333, 388, 466, 513, 727, 887
Mph1103I	ATGCAT	1 cut(s)	856
MroI	TCCGGA	1 cut(s)	231
MseI	TTAA	1 cut(s)	335
MspI	CCGG	2 cut(s)	232, 848
MspR9I	CCNGG	1 cut(s)	848
Mva1269I	GAATGC	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	848
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	7 cut(s)	40, 84, 234, 352, 371, 713, 921
NlaIII	CATG	6 cut(s)	104, 194, 593, 648, 701, 858
NlaIV	GGNNCC	2 cut(s)	236, 632
NmuCI	GTSAC	3 cut(s)	569, 592, 931
NsiI	ATGCAT	1 cut(s)	856
NspI	RCATGY	2 cut(s)	701, 858
NspV	TTCGAA	1 cut(s)	324
PagI	TCATGA	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	666
PfeI	GAWTC	6 cut(s)	273, 400, 410, 529, 622, 640
PfoI	TCCNGGA	1 cut(s)	846
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PspN4I	GGNNCC	2 cut(s)	236, 632
PspPI	GGNCC	2 cut(s)	162, 950
PsuI	RGATCY	3 cut(s)	234, 352, 713
RsaI	GTAC	2 cut(s)	632, 761
RsaNI	GTAC	2 cut(s)	631, 760
SalI	GTCGAC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	7 cut(s)	40, 84, 234, 352, 371, 713, 921
Sau96I	GGNCC	2 cut(s)	162, 950
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	1 cut(s)	848
SetI	ASST	8 cut(s)	189, 219, 271, 316, 481, 822, 834, 968
SfaNI	GCATC	2 cut(s)	233, 841
SfuI	TTCGAA	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	763
SmoI	CTYRAG	1 cut(s)	763
Sse9I	AATT	7 cut(s)	203, 246, 304, 319, 327, 753, 886
SsiI	CCGC	2 cut(s)	152, 689
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	2 cut(s)	603, 747
StyD4I	CCNGG	1 cut(s)	846
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	5 cut(s)	46, 271, 324, 892, 924
TasI	AATT	7 cut(s)	203, 246, 304, 319, 327, 753, 886
TfiI	GAWTC	6 cut(s)	273, 400, 410, 529, 622, 640
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	3 cut(s)	68, 298, 632
TseFI	GTSAC	3 cut(s)	569, 592, 931
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	3 cut(s)	569, 592, 931
TspDTI	ATGAA	2 cut(s)	17, 317
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	68, 298, 632
XapI	RAATTY	2 cut(s)	304, 886
XceI	RCATGY	2 cut(s)	701, 858
XmiI	GTMKAC	1 cut(s)	46
XspI	CTAG	2 cut(s)	603, 747
Zsp2I	ATGCAT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.