Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

4048297 .. 4050321

Gene Structure 2025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAATATTGCCAATACTAGTCTTCTTCCTTGCCACAGTTGTATCAACAACTCAAGGTCATGAGCCACTTGTAACCCACCATATTCATCTCCTCAGGCCAAAATCCGGAGCGGGCGGTGACAGCGTTCCTGGCGTGTCGTGCTTAAGTTGGAGATTGGGGGTGGAAACTAACAACATTATTAACTGGAAGACTGTTCCAGCAGAATGTGAGAGCTATGTTGGGCACTACTTGCTTGGCCACCAGTACAGGAAAGACTCAAAGGTGGTCACTAATGAGGCTTGGCTCTATGCTAAGAGTCTCAATCTTACAAACGATGGCAAGAATGTGTGGGTGTTTGATATAGATGAGACTACGCTCTCTAATCTACCTTATTATGCTGATCATGGATTTGGGACGGAGTTATACAATTCCACTGCATTCAATACATGGGTCTTGGAAGGCACAGCCCCAGCTTTGCCTGAGAGTCTCAAGCTCTACAAAAAGCTTTTGAAACTTGGAGTCAAGGTTGTATTCATAACAGGAAGTGGAGAAGGTCAAAGAAATGTCACAACCACCAATCTCAAGAATGTTGGATATCACACTTGGGAGAAGCTTGTGCTCAAGGGATCGACTTATTCTGGCAACACATCATATGTGTACAAATCAACAGAGAGAACTAAGCTTGTGAAGAGTGGATTTAGAATAATTGGGAATATTGGTGATCAATGGAGTGATATCTTGGGGACAAATGTCGGCAATCGGACCTTCAAGTTACCTGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

261

Amino Acids

29.0

Weight (kDa)

8.66

Isoelectric Point (pI)

24.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	2 cut(s)	113, 117
AclWI	GGATC	2 cut(s)	616, 755
AcoI	YGGCCR	1 cut(s)	238
AfaI	GTAC	2 cut(s)	248, 641
AfiI	CCNNNNNNNGG	1 cut(s)	107
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	424, 493, 751
AhlI	ACTAGT	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	6 cut(s)	216, 455, 475, 487, 595, 664
AluI	AGCT	6 cut(s)	216, 455, 475, 487, 595, 664
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	3 cut(s)	305, 344, 473
AlwI	GGATC	2 cut(s)	616, 755
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	2 cut(s)	98, 238
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	131, 713
AvaII	GGWCC	1 cut(s)	744
AxyI	CCTNAGG	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	228
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BalI	TGGCCA	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	16, 197
Bbv12I	GWGCWC	1 cut(s)	603
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	2 cut(s)	382, 703
BcoDI	GTCTC	3 cut(s)	305, 344, 473
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	744
BmgT120I	GGNCC	1 cut(s)	744
BmrFI	CCNGG	1 cut(s)	132
BoxI	GACNNNNGTC	1 cut(s)	731
BpiI	GAAGAC	2 cut(s)	16, 197
BpuEI	CTTGAG	4 cut(s)	39, 455, 548, 587
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	191, 244
Bse21I	CCTNAGG	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	109, 453
BseNI	ACTGG	2 cut(s)	191, 244
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	451
BshFI	GGCC	2 cut(s)	100, 240
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	409, 739
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	3 cut(s)	305, 344, 473
BsmFI	GGGAC	2 cut(s)	409, 739
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	100, 240
Bsp1286I	GDGCHC	2 cut(s)	228, 603
Bsp13I	TCCGGA	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	4 cut(s)	382, 608, 703, 760
BspACI	CCGC	2 cut(s)	113, 117
BspANI	GGCC	2 cut(s)	100, 240
BspCNI	CTCAG	2 cut(s)	108, 454
BspEI	TCCGGA	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	61
BspPI	GGATC	2 cut(s)	616, 755
BspTI	CTTAAG	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	191, 244
BssMI	GATC	4 cut(s)	382, 608, 703, 760
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	40, 196
Bst6I	CTCTTC	1 cut(s)	665
BstAFI	CTTAAG	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstAUI	TGTACA	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	4 cut(s)	95, 294, 462, 660
BstKTI	GATC	4 cut(s)	385, 611, 706, 763
BstMAI	GTCTC	3 cut(s)	305, 344, 473
BstMBI	GATC	4 cut(s)	382, 608, 703, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 132, 141, 232
BstNI	CCWGG	1 cut(s)	132
BstPAI	GACNNNNGTC	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	228
BstV2I	GAAGAC	2 cut(s)	16, 197
Bsu36I	CCTNAGG	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	100, 240
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	744
Csp6I	GTAC	2 cut(s)	247, 640
CviAII	CATG	3 cut(s)	62, 386, 429
CviQI	GTAC	2 cut(s)	247, 640
DdeI	CTNAG	4 cut(s)	95, 294, 462, 660
DpnI	GATC	4 cut(s)	384, 610, 705, 762
DpnII	GATC	4 cut(s)	382, 608, 703, 760
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
Eco32I	GATATC	2 cut(s)	578, 718
Eco47I	GGWCC	1 cut(s)	744
Eco81I	CCTNAGG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	2 cut(s)	578, 718
FaeI	CATG	3 cut(s)	65, 389, 432
FaqI	GGGAC	2 cut(s)	409, 739
FatI	CATG	3 cut(s)	61, 385, 428
FauI	CCCGC	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	634
FbaI	TGATCA	2 cut(s)	382, 703
FspBI	CTAG	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	100, 240
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	3 cut(s)	65, 389, 432
HindIII	AAGCTT	3 cut(s)	485, 593, 662
HinfI	GANTC	4 cut(s)	257, 298, 466, 501
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	131, 713
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	1 cut(s)	744
Hpy188III	TCNNGA	3 cut(s)	62, 108, 565
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	3 cut(s)	434, 527, 757
HpyCH4III	ACNGT	2 cut(s)	40, 196
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 132, 141, 232
HpyF3I	CTNAG	4 cut(s)	95, 294, 462, 660
Hsp92II	CATG	3 cut(s)	65, 389, 432
Kpn2I	TCCGGA	1 cut(s)	107
Ksp22I	TGATCA	2 cut(s)	382, 703
Kzo9I	GATC	4 cut(s)	382, 608, 703, 760
LmnI	GCTCC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	5 cut(s)	73, 119, 268, 547, 753
MalI	GATC	4 cut(s)	384, 610, 705, 762
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	4 cut(s)	382, 608, 703, 760
MboII	GAAGA	4 cut(s)	16, 19, 202, 682
MhlI	GDGCHC	2 cut(s)	228, 603
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	2 cut(s)	409, 687
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	4 cut(s)	251, 307, 475, 510
MmeI	TCCRAC	2 cut(s)	131, 553
MnlI	CCTC	2 cut(s)	104, 271
Mox20I	TGGCCA	1 cut(s)	240
MroI	TCCGGA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	2 cut(s)	146, 183
Msp20I	TGGCCA	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	145
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	123, 132, 141, 232
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	4 cut(s)	382, 608, 703, 760
NlaIII	CATG	3 cut(s)	65, 389, 432
NmuCI	GTSAC	3 cut(s)	119, 268, 547
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	419
PleI	GAGTC	4 cut(s)	251, 306, 474, 509
PpsI	GAGTC	4 cut(s)	251, 306, 474, 509
PshAI	GACNNNNGTC	1 cut(s)	731
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	744
RsaI	GTAC	2 cut(s)	248, 641
RsaNI	GTAC	2 cut(s)	247, 640
SaqAI	TTAA	2 cut(s)	146, 183
Sau3AI	GATC	4 cut(s)	382, 608, 703, 760
Sau96I	GGNCC	1 cut(s)	744
SchI	GAGTC	4 cut(s)	251, 307, 475, 510
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	228, 603
SinI	GGWCC	1 cut(s)	744
SmlI	CTYRAG	5 cut(s)	54, 145, 470, 563, 602
SmoI	CTYRAG	5 cut(s)	54, 145, 470, 563, 602
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	2 cut(s)	409, 687
SsiI	CCGC	2 cut(s)	113, 117
SspI	AATATT	2 cut(s)	9, 697
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	40, 196
TaqI	TCGA	1 cut(s)	611
TasI	AATT	2 cut(s)	409, 687
TatI	WGTACW	2 cut(s)	246, 639
Tru1I	TTAA	2 cut(s)	146, 183
Tru9I	TTAA	2 cut(s)	146, 183
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	3 cut(s)	119, 268, 547
Tsp45I	GTSAC	3 cut(s)	119, 268, 547
TspDTI	ATGAA	2 cut(s)	77, 505
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	421
Vha464I	CTTAAG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	744
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.