Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

58365517 .. 58367399

Gene Structure 1883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAAGCATTGCCAGTACTACAACTCTTGTTTCTAGCCACACTTGTGGCCACAACCCAAGATTCATTCGAGCTTGACATAGCCGACCAAATAATCCATCTCCTCCGGCCAAAATCCGGCGTCGGCGGCAGCCAAGTCAGCAACATTTCATGCCTGAGTTGGCGACTGGGAGTGGAGACCCACAACATCATTGATTGGACGACTATTCCAGCTGCTTGTGAAGGCTACGTCGGGCACTACATGCTCGGCGACCAGTACAGAAAAGACTCGGAAGTTGTTACTCATGAGGCCTTTGTCTATGCTGAGGGGCTGAACCTCACCGACGATGGTAACAACTTGTGGGTATTTGACATCGATGAGACTAGTCTCTCTAATCTGCCGTACTATGCCGAGCATGGATTCGGGGTGGAGGTATATAATTCAACTGCATTCACTGCCTGGGTCTTGGAAGGCATAGCCCCAGCTTTGCCCGAGAGTCTAAAGCTGTACAAGAAGTTATTGGCTCTTGGAATCAAGGTTGCATTCATAACTGGAAGGGAAGAATCTCAGAGAAATGTCACAGAAACCAATCTGAAGAATGTTGGATACGATACCTGGGAAACGCTCATACTAAAAGATTCATCTTATTCTGGTAGCACAGCAGTGGTGTATAAATCAGCTGAGAGAAAGAAGCTTGAAGAGAGTAGATATAGAATAATTGGAAACATTGGTGATCAATGGAGTGATCTAATGGGGACAAACATCGGCAATAGAACCTTCAAGTTGCCTGATCCAATGTATTACATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

264

Amino Acids

29.41

Weight (kDa)

4.92

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	45 - 262	7.5e-84	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	2 cut(s)	48, 107
AcuI	CTGAAG	1 cut(s)	593
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	4 cut(s)	18, 257, 383, 488
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	423, 677, 760
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	2 cut(s)	437, 593
AleI	CACNNNNGTG	2 cut(s)	44, 641
AluBI	AGCT	7 cut(s)	73, 212, 464, 484, 659, 673, 789
AluI	AGCT	7 cut(s)	73, 212, 464, 484, 659, 673, 789
Alw26I	GTCTC	3 cut(s)	170, 353, 371
AlwI	GGATC	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	3 cut(s)	48, 107, 288
ApeKI	GCWGC	2 cut(s)	129, 212
AsuHPI	GGTGA	2 cut(s)	310, 722
AvaI	CYCGRG	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	141, 199
BccI	CCATC	2 cut(s)	105, 320
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	2 cut(s)	439, 595
BciVI	GTATCC	1 cut(s)	578
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	3 cut(s)	170, 353, 371
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	2 cut(s)	35, 363
BfuI	GTATCC	1 cut(s)	578
BisI	GCNGC	3 cut(s)	127, 130, 213
BlsI	GCNGC	3 cut(s)	128, 131, 214
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	439, 595
BmeT110I	CYCGRG	1 cut(s)	470
BmrFI	CCNGG	2 cut(s)	439, 595
BmrI	ACTGGG	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	438, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	4 cut(s)	14, 171, 253, 535
Bse3DI	GCAATG	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	439, 595
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	438, 594
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	4 cut(s)	146, 294, 560, 651
BseNI	ACTGG	4 cut(s)	14, 171, 253, 535
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	141, 199
BseYI	CCCAGC	1 cut(s)	460
BshFI	GGCC	3 cut(s)	50, 109, 290
BshVI	ATCGAT	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	2 cut(s)	106, 117
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	3 cut(s)	170, 353, 371
BsmFI	GGGAC	1 cut(s)	748
BsmI	GAATGC	2 cut(s)	428, 521
BsnI	GGCC	3 cut(s)	50, 109, 290
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	712, 724, 769
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	3 cut(s)	50, 109, 290
BspCNI	CTCAG	4 cut(s)	147, 295, 559, 652
BspDI	ATCGAT	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	283
BspPI	GGATC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	4 cut(s)	14, 171, 253, 535
BssECI	CCNNGG	2 cut(s)	438, 594
BssMI	GATC	3 cut(s)	712, 724, 769
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	439, 595
Bst6I	CTCTTC	1 cut(s)	672
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	2 cut(s)	241, 434
BstAUI	TGTACA	1 cut(s)	486
BstDEI	CTNAG	4 cut(s)	155, 303, 546, 660
BstKTI	GATC	3 cut(s)	715, 727, 772
BstMAI	GTCTC	3 cut(s)	170, 353, 371
BstMBI	GATC	3 cut(s)	712, 724, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 138, 241, 434
BstNI	CCWGG	2 cut(s)	439, 595
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	437, 593
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	141, 199
BstXI	CCANNNNNNTGG	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	50, 109, 290
BsuTUI	ATCGAT	1 cut(s)	354
BtsI	GCAGTG	2 cut(s)	432, 648
BtsIMutI	CAGTG	2 cut(s)	432, 648
CciI	TCATGA	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	354
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	17, 256, 382, 487
CviAII	CATG	4 cut(s)	150, 241, 284, 395
CviQI	GTAC	4 cut(s)	17, 256, 382, 487
DdeI	CTNAG	4 cut(s)	155, 303, 546, 660
DpnI	GATC	3 cut(s)	714, 726, 771
DpnII	GATC	3 cut(s)	712, 724, 769
EaeI	YGGCCR	2 cut(s)	48, 107
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Eco147I	AGGCCT	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	470
EcoRII	CCWGG	2 cut(s)	437, 593
FaeI	CATG	4 cut(s)	153, 244, 287, 398
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	4 cut(s)	149, 240, 283, 394
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	3 cut(s)	127, 130, 213
Fsp4HI	GCNGC	3 cut(s)	127, 130, 213
FspBI	CTAG	2 cut(s)	35, 363
GluI	GCNGC	3 cut(s)	127, 130, 213
GsaI	CCCAGC	1 cut(s)	464
HaeIII	GGCC	3 cut(s)	50, 109, 290
HapII	CCGG	2 cut(s)	106, 117
HgaI	GACGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	153, 244, 287, 398
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	7 cut(s)	62, 266, 399, 475, 510, 542, 617
HpaII	CCGG	2 cut(s)	106, 117
HphI	GGTGA	2 cut(s)	310, 722
Hpy188I	TCNGA	3 cut(s)	271, 549, 573
Hpy188III	TCNNGA	1 cut(s)	284
Hpy99I	CGWCG	3 cut(s)	125, 233, 326
HpyAV	CCTTC	4 cut(s)	215, 443, 528, 766
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	428, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 138, 241, 434
HpyF3I	CTNAG	4 cut(s)	155, 303, 546, 660
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	153, 244, 287, 398
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	712, 724, 769
Lsp1109I	GCAGC	2 cut(s)	141, 199
MaeI	CTAG	2 cut(s)	35, 363
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	3 cut(s)	277, 329, 556
MalI	GATC	3 cut(s)	714, 726, 771
MboI	GATC	3 cut(s)	712, 724, 769
MboII	GAAGA	3 cut(s)	551, 586, 689
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	418, 696
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	2 cut(s)	260, 484
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	5 cut(s)	113, 280, 298, 326, 403
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MslI	CAYNNNNRTG	2 cut(s)	44, 641
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	2 cut(s)	212, 659
MspI	CCGG	2 cut(s)	106, 117
MspR9I	CCNGG	2 cut(s)	439, 595
Mva1269I	GAATGC	2 cut(s)	428, 521
MvaI	CCWGG	2 cut(s)	439, 595
MwoI	GCNNNNNNNGC	4 cut(s)	126, 138, 241, 434
NdeII	GATC	3 cut(s)	712, 724, 769
NlaIII	CATG	4 cut(s)	153, 244, 287, 398
NmeAIII	GCCGAG	2 cut(s)	225, 415
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	1 cut(s)	244
OliI	CACNNNNGTG	2 cut(s)	44, 641
PagI	TCATGA	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	290
PctI	GAATGC	2 cut(s)	428, 521
PfeI	GAWTC	5 cut(s)	62, 399, 510, 542, 617
PkrI	GCNGC	3 cut(s)	128, 131, 214
PleI	GAGTC	2 cut(s)	260, 483
PpsI	GAGTC	2 cut(s)	260, 483
Psp6I	CCWGG	2 cut(s)	437, 593
PspFI	CCCAGC	1 cut(s)	460
PspGI	CCWGG	2 cut(s)	437, 593
PvuII	CAGCTG	2 cut(s)	212, 659
RsaI	GTAC	4 cut(s)	18, 257, 383, 488
RsaNI	GTAC	4 cut(s)	17, 256, 382, 487
RseI	CAYNNNNRTG	2 cut(s)	44, 641
SatI	GCNGC	3 cut(s)	127, 130, 213
Sau3AI	GATC	3 cut(s)	712, 724, 769
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	2 cut(s)	260, 484
ScrFI	CCNGG	2 cut(s)	439, 595
SduI	GDGCHC	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	44, 641
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	2 cut(s)	418, 696
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	2 cut(s)	35, 363
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	437, 593
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	69, 354
TasI	AATT	2 cut(s)	418, 696
TatI	WGTACW	3 cut(s)	16, 255, 486
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	5 cut(s)	62, 399, 510, 542, 617
TscAI	CASTG	2 cut(s)	439, 648
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	129, 212
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	5 cut(s)	17, 54, 138, 514, 609
TspRI	CASTG	2 cut(s)	439, 648
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	2 cut(s)	35, 363
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.