Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

18561010 .. 18564254

Gene Structure 3245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1201200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAAAGATTGCCAGGAGTATTACTCTTCTTTCTTGTCATATTTTTCTCAACAACTCAAGCTTATGAGCCACTTATAAACCACCAAATCCATCTCCTCAGGCCGAAATCCGGGGCGGGTGGCAGCAGCGTTCCCGGCCTGTCTTGTCTGAGTTGGCGTTTGGCGGTGGAAGTTGGGAACATTATCAACTGGAAGACTGTTCCGGCACAATGTGGAAGCTACGTTGGGCACTACATGCTTGGGCACCAGTACAGGAAGGACTCAAAATTGATCACTGATGTGGCTTGGCTCTATGCCAAGAGCCTCAATCTTAAAAAGGATGGCAAGAACGTTTGGGTCTTTGATATAGATGAAACCACGCTCTCTAATCTACCGTATTTTGCTCGTCAAGGATTCGGGACGAAGGCATTCAATATCACTGCATTCAATGAATGGGTGTTGGAAGGCAGAGCCCCAGCTTTGCCCGAGAGTCTTCAGCTGTACAAGAAATTGTTGAAACTTGGAGTCAAGGTCGTGTTCATAACAGGTAGAGAAGAAGATCAGAGAAGTGTCACAATCACCAATCTCAGAAATGTCGGATATCGCACTTGGGAGAAGCTTGTCTTAAAGGGATCAGCTTATTCTGGGAAGACATCGTACGAGTTTAAATCAGCAGAGAGGGCGAAGCTTGAGAAGAGTGGATTCAGAATAATTGGGAACATGGGTGATCAATGGAGCGATATATTGGGGGCAAGTGCCGGCAACCGGACCTTCAAGTTGCCTGATCCGCTCTACTACGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

262

Amino Acids

29.38

Weight (kDa)

9.55

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	43 - 260	4.1e-82	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	243
AccBSI	CCGCTC	1 cut(s)	769
AciI	CCGC	3 cut(s)	116, 164, 767
AclI	AACGTT	1 cut(s)	330
AclWI	GGATC	2 cut(s)	619, 758
AcuI	CTGAAG	1 cut(s)	458
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	3 cut(s)	251, 482, 638
AfiI	CCNNNNNNNGG	2 cut(s)	110, 744
AgsI	TTSAA	4 cut(s)	412, 427, 496, 754
AjnI	CCWGG	1 cut(s)	13
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	7 cut(s)	62, 219, 458, 478, 598, 617, 667
AluI	AGCT	7 cut(s)	62, 219, 458, 478, 598, 617, 667
AlwI	GGATC	2 cut(s)	619, 758
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	101, 136
ApeKI	GCWGC	2 cut(s)	123, 126
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	747
AsuC2I	CCSGG	2 cut(s)	112, 135
AsuHPI	GGTGA	2 cut(s)	550, 716
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	747
AxyI	CCTNAGG	1 cut(s)	98
BaeGI	GKGCMC	2 cut(s)	231, 246
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbsI	GAAGAC	3 cut(s)	200, 464, 635
BbvI	GCAGC	2 cut(s)	135, 138
BccI	CCATC	2 cut(s)	99, 314
BciT130I	CCWGG	1 cut(s)	15
BclI	TGATCA	2 cut(s)	270, 706
BcnI	CCSGG	2 cut(s)	112, 135
BisI	GCNGC	2 cut(s)	124, 127
BlsI	GCNGC	2 cut(s)	125, 128
Bme1390I	CCNGG	3 cut(s)	15, 112, 135
Bme18I	GGWCC	1 cut(s)	747
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	747
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	3 cut(s)	15, 112, 135
BpiI	GAAGAC	3 cut(s)	200, 464, 635
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	2 cut(s)	42, 689
BpuMI	CCSGG	2 cut(s)	112, 135
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	744
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 744
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	2 cut(s)	194, 247
Bse21I	CCTNAGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	110, 744
BseMII	CTCAG	3 cut(s)	112, 140, 580
BseNI	ACTGG	2 cut(s)	194, 247
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	2 cut(s)	231, 246
BseXI	GCAGC	2 cut(s)	135, 138
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	2 cut(s)	103, 138
BshNI	GGYRCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	5 cut(s)	111, 135, 203, 738, 745
BsiWI	CGTACG	1 cut(s)	636
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	2 cut(s)	110, 744
BsmFI	GGGAC	1 cut(s)	412
BsmI	GAATGC	2 cut(s)	407, 422
BsnI	GGCC	2 cut(s)	103, 138
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	231, 246, 454
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	270, 538, 611, 706, 763
BspACI	CCGC	3 cut(s)	116, 164, 767
BspANI	GGCC	2 cut(s)	103, 138
BspCNI	CTCAG	3 cut(s)	111, 141, 579
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	619, 758
BspT107I	GGYRCC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	769
BsrFI	RCCGGY	1 cut(s)	737
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	194, 247
BssAI	RCCGGY	1 cut(s)	737
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	5 cut(s)	270, 538, 611, 706, 763
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	199, 375
Bst6I	CTCTTC	2 cut(s)	32, 668
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	739
BstDEI	CTNAG	3 cut(s)	98, 149, 566
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	5 cut(s)	273, 541, 614, 709, 766
BstMBI	GATC	5 cut(s)	270, 538, 611, 706, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 235, 659, 766
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	13, 110, 133
BstSLI	GKGCMC	2 cut(s)	231, 246
BstV1I	GCAGC	2 cut(s)	135, 138
BstV2I	GAAGAC	3 cut(s)	200, 464, 635
Bsu36I	CCTNAGG	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	103, 138
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	2 cut(s)	273, 417
Cac8I	GCNNGC	1 cut(s)	739
Cfr10I	RCCGGY	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	747
Csp6I	GTAC	3 cut(s)	250, 481, 637
CviAII	CATG	2 cut(s)	235, 700
CviQI	GTAC	3 cut(s)	250, 481, 637
DdeI	CTNAG	3 cut(s)	98, 149, 566
DpnI	GATC	5 cut(s)	272, 540, 613, 708, 765
DpnII	GATC	5 cut(s)	270, 538, 611, 706, 763
DraI	TTTAAA	1 cut(s)	646
DraIII	CACNNNGTG	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	32, 668
EarI	CTCTTC	2 cut(s)	32, 668
Eco24I	GRGCYC	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	2 cut(s)	238, 703
FaiI	YATR	9 cut(s)	41, 66, 77, 236, 294, 347, 521, 701, 722
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	2 cut(s)	234, 699
FauI	CCCGC	1 cut(s)	109
FbaI	TGATCA	2 cut(s)	270, 706
Fnu4HI	GCNGC	2 cut(s)	124, 127
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	2 cut(s)	124, 127
GluI	GCNGC	2 cut(s)	124, 127
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	103, 138
HapII	CCGG	5 cut(s)	111, 135, 203, 738, 745
Hin1II	CATG	2 cut(s)	238, 703
HindIII	AAGCTT	3 cut(s)	60, 596, 665
HinfI	GANTC	5 cut(s)	260, 393, 469, 504, 681
HpaII	CCGG	5 cut(s)	111, 135, 203, 738, 745
HphI	GGTGA	2 cut(s)	550, 716
Hpy188I	TCNGA	5 cut(s)	150, 543, 569, 578, 686
Hpy188III	TCNNGA	1 cut(s)	397
HpyAV	CCTTC	4 cut(s)	250, 397, 437, 760
HpyCH4III	ACNGT	2 cut(s)	199, 375
HpyCH4IV	ACGT	3 cut(s)	222, 330, 777
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 235, 659, 766
HpyF3I	CTNAG	3 cut(s)	98, 149, 566
HpySE526I	ACGT	3 cut(s)	222, 330, 777
Hsp92II	CATG	2 cut(s)	238, 703
KroI	GCCGGC	1 cut(s)	737
KroNI	GCCGGC	1 cut(s)	739
Ksp22I	TGATCA	2 cut(s)	270, 706
Kzo9I	GATC	5 cut(s)	270, 538, 611, 706, 763
LmnI	GCTCC	1 cut(s)	714
Lsp1109I	GCAGC	2 cut(s)	135, 138
MaeII	ACGT	3 cut(s)	222, 330, 777
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	5 cut(s)	272, 540, 613, 708, 765
MbiI	CCGCTC	1 cut(s)	769
MboI	GATC	5 cut(s)	270, 538, 611, 706, 763
MboII	GAAGA	7 cut(s)	19, 205, 464, 545, 548, 640, 685
MhlI	GDGCHC	3 cut(s)	231, 246, 454
MluCI	AATT	3 cut(s)	266, 488, 690
MlyI	GAGTC	3 cut(s)	254, 478, 513
MmeI	TCCRAC	2 cut(s)	420, 556
MnlI	CCTC	3 cut(s)	107, 314, 651
MroNI	GCCGGC	1 cut(s)	737
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	3 cut(s)	312, 605, 645
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	5 cut(s)	111, 135, 203, 738, 745
MspR9I	CCNGG	3 cut(s)	15, 112, 135
Mva1269I	GAATGC	2 cut(s)	407, 422
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	135, 235, 659, 766
NaeI	GCCGGC	1 cut(s)	739
NciI	CCSGG	2 cut(s)	112, 135
NdeII	GATC	5 cut(s)	270, 538, 611, 706, 763
NgoMIV	GCCGGC	1 cut(s)	737
NlaIII	CATG	2 cut(s)	238, 703
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	278
PctI	GAATGC	2 cut(s)	407, 422
PdiI	GCCGGC	1 cut(s)	739
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	393, 681
Pfl23II	CGTACG	1 cut(s)	636
PkrI	GCNGC	2 cut(s)	125, 128
PleI	GAGTC	3 cut(s)	254, 477, 512
PpsI	GAGTC	3 cut(s)	254, 477, 512
PsiI	TTATAA	1 cut(s)	77
Psp1406I	AACGTT	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	13
PspLI	CGTACG	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	3 cut(s)	251, 482, 638
RsaNI	GTAC	3 cut(s)	250, 481, 637
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	312, 605, 645
SatI	GCNGC	2 cut(s)	124, 127
Sau3AI	GATC	5 cut(s)	270, 538, 611, 706, 763
Sau96I	GGNCC	1 cut(s)	747
SchI	GAGTC	3 cut(s)	254, 478, 513
ScrFI	CCNGG	3 cut(s)	15, 112, 135
SduI	GDGCHC	3 cut(s)	231, 246, 454
SinI	GGWCC	1 cut(s)	747
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	2 cut(s)	57, 668
SmoI	CTYRAG	2 cut(s)	57, 668
Sse9I	AATT	3 cut(s)	266, 488, 690
SsiI	CCGC	3 cut(s)	116, 164, 767
StyD4I	CCNGG	3 cut(s)	13, 110, 133
TaaI	ACNGT	2 cut(s)	199, 375
TaiI	ACGT	3 cut(s)	225, 333, 780
TasI	AATT	3 cut(s)	266, 488, 690
TatI	WGTACW	2 cut(s)	249, 480
TfiI	GAWTC	2 cut(s)	393, 681
Tru1I	TTAA	3 cut(s)	312, 605, 645
Tru9I	TTAA	3 cut(s)	312, 605, 645
TscAI	CASTG	2 cut(s)	280, 424
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	2 cut(s)	123, 126
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	366, 444, 508
TspRI	CASTG	2 cut(s)	280, 424
VpaK11BI	GGWCC	1 cut(s)	747
XceI	RCATGY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.