Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004769.1

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

34583 .. 36252

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004769.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgaaaatattgccagctcttcttgtcttcctcctggctacacttgtatcagcaatccaagcttcagacgatgctttatcccaccagattcatctcccccggccacaaaccggttcccgtgggagccacgtccccggcatttcgtgcctcagctggcgactgggagtggaaacccacaatatcattgactgggagactgttccagctgcctgtgaaggctatgtagggcactacatgcttggccaccagtaccgaaaagactctaaagctgttacgtatgaggcttatctctacgctaagagcctgaatcttaccaaggatgacaagaatttgtggatctttgacatagatgagactagtctctccaatctgccttattatgttcaccatggatttggggtagaggcttatgattccactacattcggcgcatgggtcttggaaggcacagccccagccttgcctgaaagtcttgaactgtacaagaagttattgactcttggagtcaaggttgcattcataacgggaagaggagaatctcaaagaagtgtcacagaaaccaatctcaagaaggttggatatcacacttgggtgaagcttgtgctgaaggattcatcttactctggtaaaacagcagtcgtatataaatcatctgagagaaagaagcttgaagagaatggatacagaataattgggaacattggtgatcaatggagcgatctattgggaacaaatgttggcaacaggagcttcaagatgcctgatccaatgtattacattagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

261

Amino Acids

29.18

Weight (kDa)

7.12

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	344, 758
AcoI	YGGCCR	2 cut(s)	101, 241
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	2 cut(s)	48, 626
AfaI	GTAC	2 cut(s)	251, 482
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	3 cut(s)	476, 671, 754
AhlI	ACTAGT	1 cut(s)	356
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	8 cut(s)	17, 62, 153, 206, 269, 598, 667, 750
AluI	AGCT	8 cut(s)	17, 62, 153, 206, 269, 598, 667, 750
Alw26I	GTCTC	3 cut(s)	188, 347, 365
AlwI	GGATC	2 cut(s)	344, 758
AoxI	GGCC	2 cut(s)	101, 241
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	328
AsiGI	ACCGGT	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	431
AsuC2I	CCSGG	2 cut(s)	100, 135
AsuHPI	GGTGA	3 cut(s)	377, 604, 716
BaeGI	GKGCMC	1 cut(s)	231
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BalI	TGGCCA	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	674
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	2 cut(s)	100, 135
BcoDI	GTCTC	3 cut(s)	188, 347, 365
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	674
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	35, 100, 135
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	115, 125
BmrFI	CCNGG	3 cut(s)	35, 100, 135
BmrI	ACTGGG	2 cut(s)	170, 199
BmsI	GCATC	2 cut(s)	61, 747
BmuI	ACTGGG	2 cut(s)	170, 199
BpiI	GAAGAC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	100, 135
BsaAI	YACGTR	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	98, 118, 133, 315, 388
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	165, 194, 247
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	5 cut(s)	98, 118, 133, 315, 388
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	2 cut(s)	163, 645
BseNI	ACTGG	3 cut(s)	165, 194, 247
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	2 cut(s)	103, 243
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	100, 111, 135
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	3 cut(s)	188, 347, 365
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	103, 243
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	4 cut(s)	336, 706, 718, 763
Bsp19I	CCATGG	1 cut(s)	388
BspANI	GGCC	2 cut(s)	103, 243
BspCNI	CTCAG	2 cut(s)	162, 646
BspLI	GGNNCC	2 cut(s)	115, 125
BspPI	GGATC	2 cut(s)	344, 758
BspQI	GCTCTTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	3 cut(s)	165, 194, 247
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	5 cut(s)	98, 118, 133, 315, 388
BssMI	GATC	4 cut(s)	336, 706, 718, 763
BssT1I	CCWWGG	2 cut(s)	315, 388
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	199, 480
Bst6I	CTCTTC	3 cut(s)	24, 523, 666
BstAPI	GCANNNNNTGC	2 cut(s)	144, 235
BstAUI	TGTACA	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	15, 155
BstDEI	CTNAG	3 cut(s)	149, 297, 654
BstDSI	CCRYGG	2 cut(s)	118, 388
BstF5I	GGATG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	4 cut(s)	339, 709, 721, 766
BstMAI	GTCTC	3 cut(s)	188, 347, 365
BstMBI	GATC	4 cut(s)	336, 706, 718, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 144, 235, 747
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	33, 98, 133
BstSLI	GKGCMC	1 cut(s)	231
BstSNI	TACGTA	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	674
BsuRI	GGCC	2 cut(s)	103, 243
BtgI	CCRYGG	2 cut(s)	118, 388
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	15, 155
CfoI	GCGC	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	250, 481
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	3 cut(s)	235, 389, 432
CviQI	GTAC	2 cut(s)	250, 481
DdeI	CTNAG	3 cut(s)	149, 297, 654
DpnI	GATC	4 cut(s)	338, 708, 720, 765
DpnII	GATC	4 cut(s)	336, 706, 718, 763
EaeI	YGGCCR	2 cut(s)	101, 241
Eam1104I	CTCTTC	3 cut(s)	24, 523, 666
EarI	CTCTTC	3 cut(s)	24, 523, 666
Eco105I	TACGTA	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	315, 388
Eco32I	GATATC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	48, 626
EcoRII	CCWGG	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	581
EcoT14I	CCWWGG	2 cut(s)	315, 388
ErhI	CCWWGG	2 cut(s)	315, 388
FaeI	CATG	3 cut(s)	238, 392, 435
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	234, 388, 431
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	103, 243
HapII	CCGG	3 cut(s)	100, 111, 135
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	3 cut(s)	238, 392, 435
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HindIII	AAGCTT	3 cut(s)	60, 596, 665
HinfI	GANTC	8 cut(s)	88, 260, 307, 413, 496, 504, 536, 611
HpaII	CCGG	3 cut(s)	100, 111, 135
HphI	GGTGA	3 cut(s)	377, 604, 716
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	2 cut(s)	67, 655
Hpy188III	TCNNGA	3 cut(s)	473, 568, 754
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	4 cut(s)	209, 437, 565, 601
HpyCH4III	ACNGT	2 cut(s)	199, 480
HpyCH4IV	ACGT	2 cut(s)	129, 275
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 144, 235, 747
HpyF3I	CTNAG	3 cut(s)	149, 297, 654
HpySE526I	ACGT	2 cut(s)	129, 275
Hsp92II	CATG	3 cut(s)	238, 392, 435
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	4 cut(s)	336, 706, 718, 763
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	3 cut(s)	123, 714, 747
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	2 cut(s)	61, 747
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	2 cut(s)	129, 275
MaeIII	GTNAC	2 cut(s)	271, 550
MalI	GATC	4 cut(s)	338, 708, 720, 765
MboI	GATC	4 cut(s)	336, 706, 718, 763
MboII	GAAGA	4 cut(s)	11, 19, 540, 683
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	328, 690
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	3 cut(s)	254, 490, 513
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	5 cut(s)	41, 158, 274, 397, 524
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	1 cut(s)	784
MslI	CAYNNNNRTG	1 cut(s)	590
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	153, 206
MspI	CCGG	3 cut(s)	100, 111, 135
MspR9I	CCNGG	3 cut(s)	35, 100, 135
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	59, 144, 235, 747
NciI	CCSGG	2 cut(s)	100, 135
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	4 cut(s)	336, 706, 718, 763
NlaIII	CATG	3 cut(s)	238, 392, 435
NlaIV	GGNNCC	2 cut(s)	115, 125
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	24
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	5 cut(s)	88, 307, 413, 536, 611
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	3 cut(s)	254, 490, 512
PpsI	GAGTC	3 cut(s)	254, 490, 512
Ppu21I	YACGTR	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	115, 125
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	2 cut(s)	153, 206
RsaI	GTAC	2 cut(s)	251, 482
RsaNI	GTAC	2 cut(s)	250, 481
RseI	CAYNNNNRTG	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	784
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	336, 706, 718, 763
SchI	GAGTC	3 cut(s)	254, 490, 513
ScrFI	CCNGG	3 cut(s)	35, 100, 135
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	61, 747
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SnaBI	TACGTA	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	2 cut(s)	328, 690
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	3 cut(s)	33, 98, 133
StyI	CCWWGG	2 cut(s)	315, 388
TaaI	ACNGT	2 cut(s)	199, 480
TaiI	ACGT	2 cut(s)	132, 278
TasI	AATT	2 cut(s)	328, 690
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	5 cut(s)	88, 307, 413, 536, 611
Tru1I	TTAA	1 cut(s)	784
Tru9I	TTAA	1 cut(s)	784
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	4 cut(s)	17, 80, 508, 603
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.