Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

27363826 .. 27364970

Gene Structure 1145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAAACATTCCCGGTACTACCACTCTTCTTCCTAGCCACACTGGTGGCAACAAACCAAGCTTCAGACAGTGCTGTATCCCACCAGATTCATCTCCTCCTGCCAAAAACCGGTTCCCATGGGAGCCACGTCCCCGGCGTTTCATGCTTAAGCTGGAGACTCGGCGTCGAAACCCACAATATTATTGGGTGGAAGACTATTCCAGCGGCTTGTGAAGGCTATGTAGGGCACTACATGCTTGGCCACCAGTACAGAAAAGACTCGAAAGTTATTACTTATGAGGCGTATCTTTACGCTAACAGCCTGAATCTTACCAAGGATGGCAAGAACTTGTGGGTCTTTGACGTAGATGAGACTACTCTCTCCAACCTACCTTATTATGCTCGCCATGGATTCGGGGTGGAGGTATTTAATCCCACTTTATTCAACGAATGGGTCTCGAAAAGCACAGCCCCAGCCTTACCTGAGAGTCTTAAGTTGTACAAGAAATTATTGGCTCTTGGAATTAAGGTTGCATTCTTAACAGGAAGACCAGAATCTTATAGAAAGGCCACAGAAACCAATCTAAAAAATGTTGGATATCACACTTGGGAAACAGCTATACTAAAAGATTCATCTTATGCAGGTAAGACATCACTCTTTTATAAGTCATCTGAGAGAGAGAAACTTGAGAAGAAAGGATACAGAATAATTGGGAACATGGGCGATCAATGGACTGATCTCTTGGGGGCAAATTCTGGCAACCGGACCTTCAAGGTGCCGGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

261

Amino Acids

29.31

Weight (kDa)

9.17

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	45 - 260	1.7e-83	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
Acc36I	ACCTGC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	757
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	2 cut(s)	758, 771
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	3 cut(s)	18, 251, 482
AfiI	CCNNNNNNNGG	1 cut(s)	110
AflII	CTTAAG	2 cut(s)	148, 473
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	427, 754
AhdI	GACNNNNNGTC	1 cut(s)	164
AjiI	CACGTC	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	62, 153, 599
AluI	AGCT	3 cut(s)	62, 153, 599
Alw26I	GTCTC	3 cut(s)	151, 347, 442
AlwI	GGATC	2 cut(s)	758, 771
AoxI	GGCC	2 cut(s)	241, 549
ApoI	RAATTY	1 cut(s)	733
AsiGI	ACCGGT	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	747
AsuC2I	CCSGG	2 cut(s)	14, 135
AvaII	GGWCC	1 cut(s)	747
BaeGI	GKGCMC	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	763
BanI	GGYRCC	1 cut(s)	757
BarI	GAAGNNNNNNTAC	2 cut(s)	665, 697
BbsI	GAAGAC	2 cut(s)	200, 535
BccI	CCATC	1 cut(s)	314
BciVI	GTATCC	2 cut(s)	88, 674
BcnI	CCSGG	2 cut(s)	14, 135
BcoDI	GTCTC	3 cut(s)	151, 347, 442
BfaI	CTAG	1 cut(s)	35
BfrI	CTTAAG	2 cut(s)	148, 473
BfuAI	ACCTGC	1 cut(s)	614
BfuI	GTATCC	2 cut(s)	88, 674
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	14, 135
Bme18I	GGWCC	1 cut(s)	747
BmeRI	GACNNNNNGTC	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	747
BmiI	GGNNCC	4 cut(s)	115, 125, 759, 765
BmrFI	CCNGG	2 cut(s)	14, 135
BpiI	GAAGAC	2 cut(s)	200, 535
BpmI	CTGGAG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	2 cut(s)	14, 135
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	4 cut(s)	118, 133, 315, 388
BsaWI	WCCGGW	2 cut(s)	110, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	48, 247
BseDI	CCNNGG	4 cut(s)	118, 133, 315, 388
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	2 cut(s)	456, 645
BseNI	ACTGG	2 cut(s)	48, 247
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	2 cut(s)	243, 551
BshNI	GGYRCC	1 cut(s)	757
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	5 cut(s)	14, 111, 135, 745, 761
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	3 cut(s)	151, 347, 442
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	243, 551
Bso31I	GGTCTC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	706, 718, 763
Bsp19I	CCATGG	2 cut(s)	118, 388
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	243, 551
BspCNI	CTCAG	2 cut(s)	457, 646
BspLI	GGNNCC	4 cut(s)	115, 125, 759, 765
BspMI	ACCTGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	758, 771
BspT107I	GGYRCC	1 cut(s)	757
BspTI	CTTAAG	2 cut(s)	148, 473
BspTNI	GGTCTC	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	48, 247
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	118, 133, 315, 388
BssMI	GATC	3 cut(s)	706, 718, 763
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	3 cut(s)	118, 315, 388
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	165
BstAFI	CTTAAG	2 cut(s)	148, 473
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	465, 654
BstDSI	CCRYGG	2 cut(s)	118, 388
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	3 cut(s)	709, 721, 766
BstMAI	GTCTC	3 cut(s)	151, 347, 442
BstMBI	GATC	3 cut(s)	706, 718, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 235
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	12, 133
BstSLI	GKGCMC	1 cut(s)	231
BstV2I	GAAGAC	2 cut(s)	200, 535
BstX2I	RGATCY	1 cut(s)	763
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	763
BsuI	GTATCC	2 cut(s)	88, 674
BsuRI	GGCC	2 cut(s)	243, 551
BtgI	CCRYGG	2 cut(s)	118, 388
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	41, 76
BveI	ACCTGC	1 cut(s)	614
Cac8I	GCNNGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	747
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	3 cut(s)	17, 250, 481
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	5 cut(s)	119, 144, 235, 389, 700
CviQI	GTAC	3 cut(s)	17, 250, 481
DdeI	CTNAG	2 cut(s)	465, 654
DpnI	GATC	3 cut(s)	708, 720, 765
DpnII	GATC	3 cut(s)	706, 718, 763
DriI	GACNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	3 cut(s)	118, 315, 388
Eco31I	GGTCTC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	581
EcoT14I	CCWWGG	3 cut(s)	118, 315, 388
ErhI	CCWWGG	3 cut(s)	118, 315, 388
FaeI	CATG	5 cut(s)	122, 147, 238, 392, 703
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	5 cut(s)	118, 143, 234, 388, 699
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	243, 551
HapII	CCGG	5 cut(s)	14, 111, 135, 745, 761
HgaI	GACGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	122, 147, 238, 392, 703
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	8 cut(s)	88, 159, 260, 307, 393, 469, 536, 611
HpaII	CCGG	5 cut(s)	14, 111, 135, 745, 761
Hpy188I	TCNGA	2 cut(s)	67, 655
Hpy188III	TCNNGA	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	209, 760
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	2 cut(s)	129, 345
HpyCH4V	TGCA	2 cut(s)	515, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 235
HpyF3I	CTNAG	2 cut(s)	465, 654
HpySE526I	ACGT	2 cut(s)	129, 345
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	122, 147, 238, 392, 703
Kzo9I	GATC	3 cut(s)	706, 718, 763
LmnI	GCTCC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	129, 345
MalI	GATC	3 cut(s)	708, 720, 765
MboI	GATC	3 cut(s)	706, 718, 763
MboII	GAAGA	5 cut(s)	19, 22, 205, 540, 685
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	4 cut(s)	488, 504, 690, 733
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	3 cut(s)	153, 254, 478
MmeI	TCCRAC	2 cut(s)	390, 556
MnlI	CCTC	3 cut(s)	107, 274, 397
Mox20I	TGGCCA	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	5 cut(s)	149, 411, 474, 507, 521
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	206
MspCI	CTTAAG	2 cut(s)	148, 473
MspI	CCGG	5 cut(s)	14, 111, 135, 745, 761
MspR9I	CCNGG	2 cut(s)	14, 135
Mva1269I	GAATGC	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	144, 235
NciI	CCSGG	2 cut(s)	14, 135
NcoI	CCATGG	2 cut(s)	118, 388
NdeII	GATC	3 cut(s)	706, 718, 763
NlaIII	CATG	5 cut(s)	122, 147, 238, 392, 703
NlaIV	GGNNCC	4 cut(s)	115, 125, 759, 765
NmeAIII	GCCGAG	1 cut(s)	141
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	88, 307, 393, 536, 611
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	3 cut(s)	153, 254, 477
PpsI	GAGTC	3 cut(s)	153, 254, 477
PsiI	TTATAA	1 cut(s)	645
PspFI	CCCAGC	1 cut(s)	454
PspN4I	GGNNCC	4 cut(s)	115, 125, 759, 765
PspPI	GGNCC	1 cut(s)	747
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	3 cut(s)	18, 251, 482
RsaNI	GTAC	3 cut(s)	17, 250, 481
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	5 cut(s)	149, 411, 474, 507, 521
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	3 cut(s)	706, 718, 763
Sau96I	GGNCC	1 cut(s)	747
SchI	GAGTC	3 cut(s)	153, 254, 478
ScrFI	CCNGG	2 cut(s)	14, 135
SduI	GDGCHC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	747
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	3 cut(s)	148, 473, 668
SmoI	CTYRAG	3 cut(s)	148, 473, 668
Sse9I	AATT	4 cut(s)	488, 504, 690, 733
SsiI	CCGC	1 cut(s)	206
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	12, 133
StyI	CCWWGG	3 cut(s)	118, 315, 388
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	2 cut(s)	132, 348
TaqI	TCGA	3 cut(s)	168, 263, 440
TasI	AATT	4 cut(s)	488, 504, 690, 733
TatI	WGTACW	2 cut(s)	249, 480
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	5 cut(s)	88, 307, 393, 536, 611
Tru1I	TTAA	5 cut(s)	149, 411, 474, 507, 521
Tru9I	TTAA	5 cut(s)	149, 411, 474, 507, 521
TscAI	CASTG	2 cut(s)	48, 76
TspDTI	ATGAA	4 cut(s)	17, 80, 132, 603
TspRI	CASTG	2 cut(s)	48, 76
Vha464I	CTTAAG	2 cut(s)	148, 473
VpaK11BI	GGWCC	1 cut(s)	747
XapI	RAATTY	1 cut(s)	733
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.