Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

54960489 .. 54985371

Gene Structure 24883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG403600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATCACGAAAATATTGCCAGCTCTTCTTTTCTTCCTCCTGGCTACACTTGTATCAGCAATCCAAGCTTCAGACGATGCTTTATCCCACCAGATTCATCTCCCCCGGCCACAAACCGGTTCCCGTGGGAGCCACGTCCCCGGCATTTCGTGCCTCAGCTGGCGACTGGGAGTGGAAACCCACAATATCATTGACTGGGAGACTGTTCCAGCTGCCTGTGAAGGCTATGTAGGGCACTACATGCTTGGCCACCAGTACCGAAAAGACTCTAAAGCTGTTACGTATGAGGCTTATCTCTACGCTAAGAGCCTGAATCTTACCAAGGATGACAAGAATTTGTGGATCTTTGATATAGATGAGACTAGTCTCTCCAATCTGCCTTATTATGTTCACCATGGATTTGGGGTAGAGGTATATAATTCCACTGCATTCAACGCCTGGGTCTTAGAAGGCACAGCCCTAGCTTTGCCTGAGAGTCTTAAACTGTACAATAAGTTATTGGCTCTTGGAATTAAGGTAGCATTCATAACTGGAAGAGGAGTATCTCAAAGAAGTGTCACAAAAATCAATCTCAAATACGTTGGATATCAGACACGGGAAAAGCTTGTGCTAAAGAATTCATCTTATTCTGGTAACACATCTGTTGTGTATAAATCATCCGAGAGAAAGGAACTTGAAAAGAGTGGATATATAATAATTGGGAACATTGGTGATCAATGGAGCGATCTCTTGGGCACAAATGTGGGCGACCGGACCTTCAAGTTGCCTGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

263

Amino Acids

29.42

Weight (kDa)

8.34

Isoelectric Point (pI)

28.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	47 - 262	1.5e-80	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	350, 764
AcoI	YGGCCR	2 cut(s)	107, 247
AcsI	RAATTY	2 cut(s)	334, 616
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	257, 488
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	433, 677, 760
AhlI	ACTAGT	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	39, 437
AleI	CACNNNNGTG	1 cut(s)	740
AluBI	AGCT	7 cut(s)	23, 68, 159, 212, 275, 464, 604
AluI	AGCT	7 cut(s)	23, 68, 159, 212, 275, 464, 604
Alw26I	GTCTC	3 cut(s)	194, 353, 371
AlwI	GGATC	2 cut(s)	350, 764
AoxI	GGCC	2 cut(s)	107, 247
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	334, 616
AsiGI	ACCGGT	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	753
AsuC2I	CCSGG	2 cut(s)	106, 141
AsuHPI	GGTGA	2 cut(s)	383, 722
AvaII	GGWCC	1 cut(s)	753
BaeGI	GKGCMC	2 cut(s)	237, 737
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BalI	TGGCCA	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	41, 439
BclI	TGATCA	2 cut(s)	3, 712
BcnI	CCSGG	2 cut(s)	106, 141
BcoDI	GTCTC	3 cut(s)	194, 353, 371
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	2 cut(s)	363, 461
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	4 cut(s)	41, 106, 141, 439
Bme18I	GGWCC	1 cut(s)	753
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	753
BmiI	GGNNCC	2 cut(s)	121, 131
BmrFI	CCNGG	4 cut(s)	41, 106, 141, 439
BmrI	ACTGGG	2 cut(s)	176, 205
BmsI	GCATC	1 cut(s)	67
BmuI	ACTGGG	2 cut(s)	176, 205
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	106, 141
BsaAI	YACGTR	1 cut(s)	282
BsaJI	CCNNGG	6 cut(s)	104, 124, 139, 321, 394, 438
BsaWI	WCCGGW	2 cut(s)	116, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	4 cut(s)	171, 200, 253, 535
BseBI	CCWGG	2 cut(s)	41, 439
BseDI	CCNNGG	6 cut(s)	104, 124, 139, 321, 394, 438
BseGI	GGATG	2 cut(s)	331, 656
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	169, 462
BseNI	ACTGG	4 cut(s)	171, 200, 253, 535
BseRI	GAGGAG	1 cut(s)	552
BseSI	GKGCMC	2 cut(s)	237, 737
BseXI	GCAGC	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	751
BshFI	GGCC	2 cut(s)	109, 249
BshTI	ACCGGT	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	751
BsiSI	CCGG	4 cut(s)	106, 117, 141, 751
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	3 cut(s)	194, 353, 371
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	2 cut(s)	428, 521
BsnI	GGCC	2 cut(s)	109, 249
Bsp1286I	GDGCHC	2 cut(s)	237, 737
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	3, 342, 712, 724, 769
Bsp19I	CCATGG	1 cut(s)	394
BspANI	GGCC	2 cut(s)	109, 249
BspCNI	CTCAG	2 cut(s)	168, 463
BspLI	GGNNCC	2 cut(s)	121, 131
BspPI	GGATC	2 cut(s)	350, 764
BspQI	GCTCTTC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	4 cut(s)	171, 200, 253, 535
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	6 cut(s)	104, 124, 139, 321, 394, 438
BssMI	GATC	5 cut(s)	3, 342, 712, 724, 769
BssT1I	CCWWGG	2 cut(s)	321, 394
Bst2UI	CCWGG	2 cut(s)	41, 439
Bst4CI	ACNGT	2 cut(s)	205, 486
Bst6I	CTCTTC	2 cut(s)	30, 529
BstAPI	GCANNNNNTGC	2 cut(s)	150, 241
BstAUI	TGTACA	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	21, 161
BstDEI	CTNAG	4 cut(s)	155, 303, 445, 471
BstDSI	CCRYGG	2 cut(s)	124, 394
BstF5I	GGATG	2 cut(s)	331, 656
BstKTI	GATC	5 cut(s)	6, 345, 715, 727, 772
BstMAI	GTCTC	3 cut(s)	194, 353, 371
BstMBI	GATC	5 cut(s)	3, 342, 712, 724, 769
BstMCI	CGRYCG	1 cut(s)	751
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 150, 241, 434
BstNI	CCWGG	2 cut(s)	41, 439
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	4 cut(s)	39, 104, 139, 437
BstSLI	GKGCMC	2 cut(s)	237, 737
BstSNI	TACGTA	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	109, 249
BtgI	CCRYGG	2 cut(s)	124, 394
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	331, 656
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	21, 161
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	256, 487
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	2 cut(s)	241, 395
CviQI	GTAC	2 cut(s)	256, 487
DdeI	CTNAG	4 cut(s)	155, 303, 445, 471
DpnI	GATC	5 cut(s)	5, 344, 714, 726, 771
DpnII	GATC	5 cut(s)	3, 342, 712, 724, 769
EaeI	YGGCCR	2 cut(s)	107, 247
Eam1104I	CTCTTC	2 cut(s)	30, 529
EarI	CTCTTC	2 cut(s)	30, 529
Eco105I	TACGTA	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	321, 394
Eco32I	GATATC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	753
Eco57I	CTGAAG	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	39, 437
EcoRV	GATATC	1 cut(s)	587
EcoT14I	CCWWGG	2 cut(s)	321, 394
ErhI	CCWWGG	2 cut(s)	321, 394
FaeI	CATG	2 cut(s)	244, 398
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	240, 394
FbaI	TGATCA	2 cut(s)	3, 712
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	338, 643
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	363, 461
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	109, 249
HapII	CCGG	4 cut(s)	106, 117, 141, 751
Hin1II	CATG	2 cut(s)	244, 398
HindIII	AAGCTT	2 cut(s)	66, 602
HinfI	GANTC	4 cut(s)	94, 266, 313, 475
HpaII	CCGG	4 cut(s)	106, 117, 141, 751
HphI	GGTGA	2 cut(s)	383, 722
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	73, 591, 661
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	3 cut(s)	215, 443, 766
HpyCH4III	ACNGT	2 cut(s)	205, 486
HpyCH4IV	ACGT	3 cut(s)	135, 281, 579
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 150, 241, 434
HpyF3I	CTNAG	4 cut(s)	155, 303, 445, 471
HpySE526I	ACGT	3 cut(s)	135, 281, 579
Hsp92II	CATG	2 cut(s)	244, 398
Ksp22I	TGATCA	2 cut(s)	3, 712
Kzo9I	GATC	5 cut(s)	3, 342, 712, 724, 769
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	129, 720
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	363, 461
MaeII	ACGT	3 cut(s)	135, 281, 579
MaeIII	GTNAC	3 cut(s)	277, 556, 632
MalI	GATC	5 cut(s)	5, 344, 714, 726, 771
MboI	GATC	5 cut(s)	3, 342, 712, 724, 769
MboII	GAAGA	3 cut(s)	17, 25, 546
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	237, 737
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	5 cut(s)	334, 418, 510, 616, 696
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	260, 484
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	5 cut(s)	47, 164, 280, 403, 530
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	480, 513
MslI	CAYNNNNRTG	1 cut(s)	740
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	159, 212
MspI	CCGG	4 cut(s)	106, 117, 141, 751
MspR9I	CCNGG	4 cut(s)	41, 106, 141, 439
Mva1269I	GAATGC	2 cut(s)	428, 521
MvaI	CCWGG	2 cut(s)	41, 439
MwoI	GCNNNNNNNGC	4 cut(s)	65, 150, 241, 434
NciI	CCSGG	2 cut(s)	106, 141
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	5 cut(s)	3, 342, 712, 724, 769
NlaIII	CATG	2 cut(s)	244, 398
NlaIV	GGNNCC	2 cut(s)	121, 131
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	740
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	2 cut(s)	428, 521
PfeI	GAWTC	2 cut(s)	94, 313
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	260, 483
PpsI	GAGTC	2 cut(s)	260, 483
Ppu21I	YACGTR	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	39, 437
PspGI	CCWGG	2 cut(s)	39, 437
PspN4I	GGNNCC	2 cut(s)	121, 131
PspPI	GGNCC	1 cut(s)	753
PsuI	RGATCY	1 cut(s)	342
PvuII	CAGCTG	2 cut(s)	159, 212
RsaI	GTAC	2 cut(s)	257, 488
RsaNI	GTAC	2 cut(s)	256, 487
RseI	CAYNNNNRTG	1 cut(s)	740
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	480, 513
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	3, 342, 712, 724, 769
Sau96I	GGNCC	1 cut(s)	753
SchI	GAGTC	2 cut(s)	260, 484
ScrFI	CCNGG	4 cut(s)	41, 106, 141, 439
SduI	GDGCHC	2 cut(s)	237, 737
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	740
SnaBI	TACGTA	1 cut(s)	282
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	5 cut(s)	334, 418, 510, 616, 696
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	363, 461
StyD4I	CCNGG	4 cut(s)	39, 104, 139, 437
StyI	CCWWGG	2 cut(s)	321, 394
TaaI	ACNGT	2 cut(s)	205, 486
TaiI	ACGT	3 cut(s)	138, 284, 582
TasI	AATT	5 cut(s)	334, 418, 510, 616, 696
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	94, 313
Tru1I	TTAA	2 cut(s)	480, 513
Tru9I	TTAA	2 cut(s)	480, 513
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	86, 514, 609
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	753
XapI	RAATTY	2 cut(s)	334, 616
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	2 cut(s)	363, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.