Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

18371051 .. 18373877

Gene Structure 2827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1200500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCAACGAAGTCTCCACTCACCAAAACCCGCACATACCATGGAAAGATTGCCAGGAGTATTACTCTTCCTTCTTGCCATATTTTTCTCAACAACTCAAGCTTATGAGCCACTTATAAACCACCATATCCATCTCCTCAGGCCGAAATCCGGGGCGGGTGGCAGCAGCGTTCCCGGCGTGTCTTGCCTGAGTTGGCGTTTGGGGGTGGAAGTTAGGAACATTATCAACTGGAAGACTGTTCCGGCACAGTGTGAAAGCTACGTTGGGCACTACATGCTTGGGCACCAGTACAGGAAGGACTCAAAAGCGGTCACTGATGTGGCTTGGCTCTATGCTAAGAGCCTCAATCTTACAAAGGATGGCAAGAACGTTTGGGTCTTTGATATCGATGAAACTACACTCTCTAATCTACCGTATTATGCTCGTCATGGATTCGGGACCGAGGTATACAATTCCACTTCATTCAATGAATGGGTGTTGGAAGGCACAGCCCCAGCTTTGCCCGAGAGTCTTCAGCTGTACAAGAAATTGTTGAAACTTGGAGTCAAGGTCGTGTTCATAACAGGTAGAGGAGAAGATCAGAGAAGTGTCACAATCGCCAATCTCAAAAATGTCGGATATCACACCTGGGAGAAGCTTGTCTTAAAGGGATCAGCTTATTCTGGGAAGACATCGTACGAGTATAAATCAGCAGAGAGGGAGAAGCTTGAGAAGAGTGGATTCAGAATAATTGGGAACATGGGCGATCAATGGAGCGATATATTGGGGACAAGTGTCGGCAACCGGACCTTCAAGTTGCCTGATCCGCTCTACTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

275

Amino Acids

30.86

Weight (kDa)

9.29

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	56 - 273	1.2e-86	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	282
AccBSI	CCGCTC	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	4 cut(s)	30, 155, 308, 806
AclI	AACGTT	1 cut(s)	369
AclWI	GGATC	2 cut(s)	658, 797
AcuI	CTGAAG	1 cut(s)	497
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	290, 521, 677
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	466, 535, 793
AjnI	CCWGG	2 cut(s)	52, 626
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	7 cut(s)	101, 258, 497, 517, 637, 656, 706
AluI	AGCT	7 cut(s)	101, 258, 497, 517, 637, 656, 706
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	658, 797
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	162, 165
AspS9I	GGNCC	2 cut(s)	438, 786
AsuC2I	CCSGG	2 cut(s)	151, 174
AsuHPI	GGTGA	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	438, 786
AxyI	CCTNAGG	1 cut(s)	137
BaeGI	GKGCMC	2 cut(s)	270, 285
BanI	GGYRCC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
BbsI	GAAGAC	3 cut(s)	239, 503, 674
BbvI	GCAGC	2 cut(s)	174, 177
BccI	CCATC	2 cut(s)	138, 353
BciT130I	CCWGG	2 cut(s)	54, 628
BcnI	CCSGG	2 cut(s)	151, 174
BcoDI	GTCTC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	163, 166
BlsI	GCNGC	2 cut(s)	164, 167
Bme1390I	CCNGG	4 cut(s)	54, 151, 174, 628
Bme18I	GGWCC	2 cut(s)	438, 786
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	2 cut(s)	438, 786
BmiI	GGNNCC	2 cut(s)	284, 439
BmrFI	CCNGG	4 cut(s)	54, 151, 174, 628
BoxI	GACNNNNGTC	1 cut(s)	773
BpiI	GAAGAC	3 cut(s)	239, 503, 674
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpuEI	CTTGAG	2 cut(s)	81, 728
BpuMI	CCSGG	2 cut(s)	151, 174
Bsa29I	ATCGAT	1 cut(s)	387
BsaJI	CCNNGG	4 cut(s)	39, 150, 441, 627
BsaWI	WCCGGW	1 cut(s)	783
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	233, 286
Bse21I	CCTNAGG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	54, 628
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	4 cut(s)	39, 150, 441, 627
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	151, 179
BseNI	ACTGG	2 cut(s)	233, 286
BseRI	GAGGAG	2 cut(s)	125, 585
BseSI	GKGCMC	2 cut(s)	270, 285
BseXI	GCAGC	2 cut(s)	174, 177
BseYI	CCCAGC	1 cut(s)	493
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	4 cut(s)	150, 174, 242, 784
BsiWI	CGTACG	1 cut(s)	675
BslFI	GGGAC	2 cut(s)	451, 781
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	2 cut(s)	451, 781
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	503
Bsp1286I	GDGCHC	2 cut(s)	270, 285
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	4 cut(s)	577, 650, 745, 802
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	4 cut(s)	30, 155, 308, 806
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	150, 180
BspDI	ATCGAT	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	284, 439
BspPI	GGATC	2 cut(s)	658, 797
BspT107I	GGYRCC	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	808
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	233, 286
BssECI	CCNNGG	4 cut(s)	39, 150, 441, 627
BssMI	GATC	4 cut(s)	577, 650, 745, 802
BssNAI	GTATAC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	448
Bst2UI	CCWGG	2 cut(s)	54, 628
Bst4CI	ACNGT	3 cut(s)	238, 249, 414
Bst6I	CTCTTC	2 cut(s)	71, 707
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstAUI	TGTACA	1 cut(s)	519
BstDEI	CTNAG	3 cut(s)	137, 188, 336
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	4 cut(s)	580, 653, 748, 805
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	577, 650, 745, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 183, 274, 805
BstNI	CCWGG	2 cut(s)	54, 628
BstNSI	RCATGY	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	773
BstSCI	CCNGG	4 cut(s)	52, 149, 172, 626
BstSLI	GKGCMC	2 cut(s)	270, 285
BstV1I	GCAGC	2 cut(s)	174, 177
BstV2I	GAAGAC	3 cut(s)	239, 503, 674
BstZ17I	GTATAC	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	254, 312
Cfr13I	GGNCC	2 cut(s)	438, 786
ClaI	ATCGAT	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	289, 520, 676
CviAII	CATG	4 cut(s)	40, 274, 428, 739
CviQI	GTAC	3 cut(s)	289, 520, 676
DdeI	CTNAG	3 cut(s)	137, 188, 336
DpnI	GATC	4 cut(s)	579, 652, 747, 804
DpnII	GATC	4 cut(s)	577, 650, 745, 802
DraIII	CACNNNGTG	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	71, 707
EarI	CTCTTC	2 cut(s)	71, 707
Eco130I	CCWWGG	1 cut(s)	39
Eco32I	GATATC	2 cut(s)	385, 620
Eco47I	GGWCC	2 cut(s)	438, 786
Eco57I	CTGAAG	1 cut(s)	497
Eco81I	CCTNAGG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	52, 626
EcoRV	GATATC	2 cut(s)	385, 620
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	4 cut(s)	43, 277, 431, 742
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	2 cut(s)	451, 781
FatI	CATG	4 cut(s)	39, 273, 427, 738
FauI	CCCGC	2 cut(s)	37, 148
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	163, 166
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	163, 166
GluI	GCNGC	2 cut(s)	163, 166
GsaI	CCCAGC	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	4 cut(s)	150, 174, 242, 784
Hin1II	CATG	4 cut(s)	43, 277, 431, 742
HindIII	AAGCTT	3 cut(s)	99, 635, 704
HinfI	GANTC	5 cut(s)	299, 432, 508, 543, 720
HpaII	CCGG	4 cut(s)	150, 174, 242, 784
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	3 cut(s)	582, 617, 725
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	4 cut(s)	80, 289, 476, 799
HpyCH4III	ACNGT	3 cut(s)	238, 249, 414
HpyCH4IV	ACGT	2 cut(s)	261, 369
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 183, 274, 805
HpyF3I	CTNAG	3 cut(s)	137, 188, 336
HpySE526I	ACGT	2 cut(s)	261, 369
Hsp92II	CATG	4 cut(s)	43, 277, 431, 742
Kzo9I	GATC	4 cut(s)	577, 650, 745, 802
LmnI	GCTCC	1 cut(s)	753
Lsp1109I	GCAGC	2 cut(s)	174, 177
MaeII	ACGT	2 cut(s)	261, 369
MaeIII	GTNAC	2 cut(s)	310, 589
MalI	GATC	4 cut(s)	579, 652, 747, 804
MbiI	CCGCTC	1 cut(s)	808
MboI	GATC	4 cut(s)	577, 650, 745, 802
MboII	GAAGA	6 cut(s)	58, 244, 503, 587, 679, 724
MhlI	GDGCHC	2 cut(s)	270, 285
MluCI	AATT	3 cut(s)	451, 527, 729
MlyI	GAGTC	3 cut(s)	293, 517, 552
MmeI	TCCRAC	2 cut(s)	459, 595
MnlI	CCTC	5 cut(s)	146, 353, 436, 563, 690
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	4 cut(s)	150, 174, 242, 784
MspR9I	CCNGG	4 cut(s)	54, 151, 174, 628
MvaI	CCWGG	2 cut(s)	54, 628
MwoI	GCNNNNNNNGC	4 cut(s)	174, 183, 274, 805
NciI	CCSGG	2 cut(s)	151, 174
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	4 cut(s)	577, 650, 745, 802
NlaIII	CATG	4 cut(s)	43, 277, 431, 742
NlaIV	GGNNCC	2 cut(s)	284, 439
NmuCI	GTSAC	2 cut(s)	310, 589
NspI	RCATGY	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	432, 720
Pfl23II	CGTACG	1 cut(s)	675
PkrI	GCNGC	2 cut(s)	164, 167
PleI	GAGTC	3 cut(s)	293, 516, 551
PpsI	GAGTC	3 cut(s)	293, 516, 551
PshAI	GACNNNNGTC	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	116
Psp1406I	AACGTT	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	52, 626
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	2 cut(s)	52, 626
PspLI	CGTACG	1 cut(s)	675
PspN4I	GGNNCC	2 cut(s)	284, 439
PspPI	GGNCC	2 cut(s)	438, 786
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	3 cut(s)	290, 521, 677
RsaNI	GTAC	3 cut(s)	289, 520, 676
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	2 cut(s)	163, 166
Sau3AI	GATC	4 cut(s)	577, 650, 745, 802
Sau96I	GGNCC	2 cut(s)	438, 786
SchI	GAGTC	3 cut(s)	293, 517, 552
ScrFI	CCNGG	4 cut(s)	54, 151, 174, 628
SduI	GDGCHC	2 cut(s)	270, 285
SinI	GGWCC	2 cut(s)	438, 786
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	96, 707
SmoI	CTYRAG	2 cut(s)	96, 707
Sse9I	AATT	3 cut(s)	451, 527, 729
SsiI	CCGC	4 cut(s)	30, 155, 308, 806
StyD4I	CCNGG	4 cut(s)	52, 149, 172, 626
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	238, 249, 414
TaiI	ACGT	2 cut(s)	264, 372
TaqI	TCGA	1 cut(s)	387
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	3 cut(s)	451, 527, 729
TatI	WGTACW	2 cut(s)	288, 519
TfiI	GAWTC	2 cut(s)	432, 720
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	2 cut(s)	254, 319
TseFI	GTSAC	2 cut(s)	310, 589
TseI	GCWGC	2 cut(s)	162, 165
Tsp45I	GTSAC	2 cut(s)	310, 589
TspDTI	ATGAA	4 cut(s)	405, 450, 483, 547
TspRI	CASTG	2 cut(s)	254, 319
VpaK11BI	GGWCC	2 cut(s)	438, 786
XceI	RCATGY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.