Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Reverse (-)

58528255 .. 58530018

Gene Structure 1764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAAATGTTGCCAGTTCTACTCTTCTTCCTCCTAGTCACACTTGTAGCAACAACCCAAGCTACAAATGGAGCTATATCCCACCAGATTCATCTCCTCAGGCCACAAACTGGTTCCGGTGGAAGGCACGTCCCCGGCATTTCATGCCTGAGCTGGAGACTAGGTGTTGAAACCCACAACATCGTTGGCTGGACGACTGTTCCAGCTGTCTGTGAAGGCTATGTTGGGCACTACATGCTAGGCAACCAGTATAGACAGGACTCGAGAGCTGTTACTAATGAGGCTTTGCTCTACGCTAAGAGCCTGAACCTTACAAAGGACGGCAAGAACATGTGGGTCTTCGACATCGATGAGACTACTCTCTCCAATCTGCCTTATTATTCTCACCATGGATTCGGAGTAGAGGTATATAATTCCACTTCATTCGACGCCTGGGTCTTAGAAGGCACGGCCCCAGCTTTGCCTGAGAGTCTTAAACTGTACAATAAGTTATTGGCTCTTGGAATTAAGGTAGCATTCATAACTGGAAGAGGAATCTCTCAAAGAAGTGTCACAGAAATCAATCTCAAATACGTTGGATATCACACATGGGAAAAGCTTGTGCTAAAGAATTCATCTTATTCTGGTAACACATCTGCTGTGTATAAATCATCGGAGAGAAAGGAACTTGAAAAGAGTGGATATAGAATAATTGGGAACATTGGTGATCAATGGAGCGATCTCTTAGGCACAAATGTGGGCGACCGGACCTTCAAGTTGCCTGATCCAATGTATTACATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

261

Amino Acids

29.07

Weight (kDa)

8.69

Isoelectric Point (pI)

28.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	46 - 260	5.3e-83	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	110
AclWI	GGATC	1 cut(s)	758
AcsI	RAATTY	1 cut(s)	610
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	3 cut(s)	110, 123, 316
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	170, 671, 754
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	7 cut(s)	62, 74, 153, 206, 269, 458, 598
AluI	AGCT	7 cut(s)	62, 74, 153, 206, 269, 458, 598
Alw26I	GTCTC	2 cut(s)	151, 347
AlwI	GGATC	1 cut(s)	758
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	2 cut(s)	101, 450
ApoI	RAATTY	1 cut(s)	610
AspS9I	GGNCC	2 cut(s)	451, 747
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	377, 716
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	747
AxyI	CCTNAGG	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	331
BceAI	ACGGC	2 cut(s)	337, 465
BciT130I	CCWGG	1 cut(s)	433
BclI	TGATCA	1 cut(s)	706
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	151, 347
BfaI	CTAG	3 cut(s)	35, 161, 239
Bme1390I	CCNGG	2 cut(s)	135, 433
Bme18I	GGWCC	1 cut(s)	747
BmeT110I	CYCGRG	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	451, 747
BmiI	GGNNCC	2 cut(s)	115, 453
BmrFI	CCNGG	2 cut(s)	135, 433
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	133, 388, 432
BsaWI	WCCGGW	2 cut(s)	116, 744
BsaXI	ACNNNNNCTCC	4 cut(s)	148, 178, 390, 420
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 123, 316
Bse1I	ACTGG	4 cut(s)	14, 115, 247, 529
Bse21I	CCTNAGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	433
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	3 cut(s)	133, 388, 432
BseLI	CCNNNNNNNGG	3 cut(s)	110, 123, 316
BseMII	CTCAG	3 cut(s)	112, 140, 456
BseNI	ACTGG	4 cut(s)	14, 115, 247, 529
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	454
Bsh1285I	CGRYCG	1 cut(s)	745
BshFI	GGCC	2 cut(s)	103, 452
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	745
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	117, 135, 745
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	110, 123, 316
BsmAI	GTCTC	2 cut(s)	151, 347
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	103, 452
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	706, 718, 763
Bsp19I	CCATGG	1 cut(s)	388
BspANI	GGCC	2 cut(s)	103, 452
BspCNI	CTCAG	3 cut(s)	111, 141, 457
BspDI	ATCGAT	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	115, 453
BspPI	GGATC	1 cut(s)	758
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	4 cut(s)	14, 115, 247, 529
BssECI	CCNNGG	3 cut(s)	133, 388, 432
BssMI	GATC	3 cut(s)	706, 718, 763
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	199, 480
Bst6I	CTCTTC	2 cut(s)	29, 523
BstACI	GRCGYC	1 cut(s)	429
BstAPI	GCANNNNNTGC	2 cut(s)	144, 235
BstAUI	TGTACA	1 cut(s)	480
BstDEI	CTNAG	6 cut(s)	98, 149, 297, 439, 465, 724
BstDSI	CCRYGG	1 cut(s)	388
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstKTI	GATC	3 cut(s)	709, 721, 766
BstMAI	GTCTC	2 cut(s)	151, 347
BstMBI	GATC	3 cut(s)	706, 718, 763
BstMCI	CGRYCG	1 cut(s)	745
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 235
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	2 cut(s)	238, 334
BstSCI	CCNGG	2 cut(s)	133, 431
BstSLI	GKGCMC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	348
Bsu36I	CCTNAGG	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	103, 452
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	388
BtrI	CACGTC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	451, 747
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	5 cut(s)	144, 235, 331, 389, 588
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	6 cut(s)	98, 149, 297, 439, 465, 724
DpnI	GATC	3 cut(s)	708, 720, 765
DpnII	GATC	3 cut(s)	706, 718, 763
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
Eam1104I	CTCTTC	2 cut(s)	29, 523
EarI	CTCTTC	2 cut(s)	29, 523
Eco130I	CCWWGG	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	747
Eco81I	CCTNAGG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	5 cut(s)	147, 238, 334, 392, 591
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	5 cut(s)	143, 234, 330, 388, 587
FbaI	TGATCA	1 cut(s)	706
FspBI	CTAG	3 cut(s)	35, 161, 239
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	103, 452
HapII	CCGG	3 cut(s)	117, 135, 745
HgaI	GACGC	1 cut(s)	437
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	5 cut(s)	147, 238, 334, 392, 591
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	5 cut(s)	88, 260, 393, 469, 534
HpaII	CCGG	3 cut(s)	117, 135, 745
HphI	GGTGA	2 cut(s)	377, 716
Hpy188I	TCNGA	2 cut(s)	398, 655
Hpy188III	TCNNGA	1 cut(s)	264
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	117, 209, 437, 760
HpyCH4III	ACNGT	2 cut(s)	199, 480
HpyCH4IV	ACGT	2 cut(s)	129, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 235
HpyF3I	CTNAG	6 cut(s)	98, 149, 297, 439, 465, 724
HpySE526I	ACGT	2 cut(s)	129, 573
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	5 cut(s)	147, 238, 334, 392, 591
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	3 cut(s)	706, 718, 763
LmnI	GCTCC	2 cut(s)	71, 714
MaeI	CTAG	3 cut(s)	35, 161, 239
MaeII	ACGT	2 cut(s)	129, 573
MaeIII	GTNAC	4 cut(s)	37, 271, 550, 626
MalI	GATC	3 cut(s)	708, 720, 765
MboI	GATC	3 cut(s)	706, 718, 763
MboII	GAAGA	4 cut(s)	16, 19, 331, 540
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	412, 504, 610, 690
MlyI	GAGTC	2 cut(s)	254, 478
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	5 cut(s)	41, 107, 274, 397, 524
MseI	TTAA	2 cut(s)	474, 507
MslI	CAYNNNNRTG	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	3 cut(s)	117, 135, 745
MspR9I	CCNGG	2 cut(s)	135, 433
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	144, 235
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	3 cut(s)	706, 718, 763
NlaIII	CATG	5 cut(s)	147, 238, 334, 392, 591
NlaIV	GGNNCC	2 cut(s)	115, 453
NmuCI	GTSAC	2 cut(s)	37, 550
NspI	RCATGY	2 cut(s)	238, 334
OliI	CACNNNNGTG	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	262
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	88, 393, 534
PflMI	CCANNNNNTGG	1 cut(s)	110
PleI	GAGTC	2 cut(s)	254, 477
PpsI	GAGTC	2 cut(s)	254, 477
PscI	ACATGT	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	115, 453
PspPI	GGNCC	2 cut(s)	451, 747
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	734
SaqAI	TTAA	2 cut(s)	474, 507
Sau3AI	GATC	3 cut(s)	706, 718, 763
Sau96I	GGNCC	2 cut(s)	451, 747
SchI	GAGTC	2 cut(s)	254, 478
ScrFI	CCNGG	2 cut(s)	135, 433
SduI	GDGCHC	1 cut(s)	231
Sfr274I	CTCGAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	747
SlaI	CTCGAG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	734
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	4 cut(s)	412, 504, 610, 690
SspMI	CTAG	3 cut(s)	35, 161, 239
StyD4I	CCNGG	2 cut(s)	133, 431
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	199, 480
TaiI	ACGT	2 cut(s)	132, 576
TaqI	TCGA	4 cut(s)	263, 342, 348, 426
TasI	AATT	4 cut(s)	412, 504, 610, 690
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	88, 393, 534
Tru1I	TTAA	2 cut(s)	474, 507
Tru9I	TTAA	2 cut(s)	474, 507
TseFI	GTSAC	2 cut(s)	37, 550
Tsp45I	GTSAC	2 cut(s)	37, 550
TspDTI	ATGAA	6 cut(s)	17, 80, 132, 411, 508, 603
Van91I	CCANNNNNTGG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	747
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	2 cut(s)	238, 334
XcmI	CCANNNNNNNNNTGG	2 cut(s)	65, 182
XhoI	CTCGAG	1 cut(s)	262
XspI	CTAG	3 cut(s)	35, 161, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.