Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

9990080 .. 9992641

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCAACGAAGTCTCCACTCACTAAAACCCGCACATACCATGGAAAGATTGCCAGGAGTATTACTCTTCTTTCTTGCCATATTTTTCTCAACAACTCAAGCTTATGAGTCACTTAGAAACCACCATATCCATCTCCTCAAGCCGAAATCTGGGGCGGGTGGCAGCAGCGTTCCCGGTGTGTCTTGCCTGAGTTGGCGTTTGGGGGTGGAAGTTAGGAACATTATCAACTGGAAGACTGTTCCGGCACAATGTGAAAGCTACGTTGGGCACTACATGCTTGGGCACCAGTACAGGAAGGACTCAAAAGCGGTCACTGATGTGGCTTGGCTCTATGCTAAGAGCCTCAATCTTACAAAGGATGGCAAGAACGTTTGGGTCTTTGATATAGATGAGACTACACTCTCTAATCTACCGTATTATGCTCGTCATGGATTCGGGACGGAGGTATACAATTCCACTTCATTCGATGAATGGGTGTTGGAAGGCACAGCCCCAGCTTTGCCCGAGAGTCTTCAGCTGTACAAGAAATTGTTGAAACTTGGAGTCAAGGTCGTGTTCATAACAGGTAGAGGAGAAGATCAGAGAAGTGTCACAACCACCAATCTCAAAAATGTCGGATATCGCACTTGGGAGAAGCTTGTCTTAAAGGGATCAGCTTATTCTGGGAAGACATCGTACGTGTATAAATCGGCAGAGAGGGAGAAGCTTGAGAAGAGTGGATTCAGAATAATTGGGAACATAGGCGATCAATGGAGCGATATATTGGGGACAAGTGTCGGCAACCGGACCTTCAAGTTGCCTGATCCACTCTACTACATCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

275

Amino Acids

30.91

Weight (kDa)

9.42

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	3 cut(s)	30, 155, 308
AclI	AACGTT	1 cut(s)	369
AclWI	GGATC	2 cut(s)	658, 797
AcuI	CTGAAG	1 cut(s)	497
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	290, 521, 677
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	2 cut(s)	535, 793
AjnI	CCWGG	1 cut(s)	52
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	7 cut(s)	101, 258, 497, 517, 637, 656, 706
AluI	AGCT	7 cut(s)	101, 258, 497, 517, 637, 656, 706
Alw26I	GTCTC	2 cut(s)	17, 386
AlwI	GGATC	2 cut(s)	658, 797
Ama87I	CYCGRG	1 cut(s)	503
ApeKI	GCWGC	2 cut(s)	162, 165
AspS9I	GGNCC	1 cut(s)	786
AsuC2I	CCSGG	1 cut(s)	174
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	786
BaeGI	GKGCMC	2 cut(s)	270, 285
BanI	GGYRCC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
BbsI	GAAGAC	3 cut(s)	239, 503, 674
BbvI	GCAGC	2 cut(s)	174, 177
BccI	CCATC	2 cut(s)	138, 353
BciT130I	CCWGG	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	17, 386
BisI	GCNGC	2 cut(s)	163, 166
BlsI	GCNGC	2 cut(s)	164, 167
Bme1390I	CCNGG	2 cut(s)	54, 174
Bme18I	GGWCC	1 cut(s)	786
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	54, 174
BoxI	GACNNNNGTC	1 cut(s)	773
BpiI	GAAGAC	3 cut(s)	239, 503, 674
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpuEI	CTTGAG	3 cut(s)	81, 122, 728
BpuMI	CCSGG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	679
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	783
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	233, 286
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	2 cut(s)	233, 286
BseRI	GAGGAG	2 cut(s)	125, 585
BseSI	GKGCMC	2 cut(s)	270, 285
BseXI	GCAGC	2 cut(s)	174, 177
BseYI	CCCAGC	1 cut(s)	493
BshNI	GGYRCC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	3 cut(s)	174, 242, 784
BsiWI	CGTACG	1 cut(s)	675
BslFI	GGGAC	2 cut(s)	451, 781
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	17, 386
BsmFI	GGGAC	2 cut(s)	451, 781
BsoBI	CYCGRG	1 cut(s)	503
Bsp1286I	GDGCHC	2 cut(s)	270, 285
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	4 cut(s)	577, 650, 745, 802
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	3 cut(s)	30, 155, 308
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	658, 797
BspT107I	GGYRCC	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	233, 286
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	577, 650, 745, 802
BssNAI	GTATAC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	238, 414
Bst6I	CTCTTC	2 cut(s)	71, 707
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstAUI	TGTACA	1 cut(s)	519
BstBAI	YACGTR	1 cut(s)	679
BstDEI	CTNAG	3 cut(s)	113, 188, 336
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	4 cut(s)	580, 653, 748, 805
BstMAI	GTCTC	2 cut(s)	17, 386
BstMBI	GATC	4 cut(s)	577, 650, 745, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	773
BstSCI	CCNGG	2 cut(s)	52, 172
BstSLI	GKGCMC	2 cut(s)	270, 285
BstV1I	GCAGC	2 cut(s)	174, 177
BstV2I	GAAGAC	3 cut(s)	239, 503, 674
BstZ17I	GTATAC	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	786
Csp6I	GTAC	3 cut(s)	289, 520, 676
CviAII	CATG	3 cut(s)	40, 274, 428
CviQI	GTAC	3 cut(s)	289, 520, 676
DdeI	CTNAG	3 cut(s)	113, 188, 336
DpnI	GATC	4 cut(s)	579, 652, 747, 804
DpnII	GATC	4 cut(s)	577, 650, 745, 802
DraIII	CACNNNGTG	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	71, 707
EarI	CTCTTC	2 cut(s)	71, 707
Eco130I	CCWWGG	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	43, 277, 431
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	2 cut(s)	451, 781
FatI	CATG	3 cut(s)	39, 273, 427
FauI	CCCGC	2 cut(s)	37, 148
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	163, 166
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	163, 166
GluI	GCNGC	2 cut(s)	163, 166
GsaI	CCCAGC	1 cut(s)	497
HapII	CCGG	3 cut(s)	174, 242, 784
Hin1II	CATG	3 cut(s)	43, 277, 431
HindIII	AAGCTT	3 cut(s)	99, 635, 704
HinfI	GANTC	6 cut(s)	107, 299, 432, 508, 543, 720
HpaII	CCGG	3 cut(s)	174, 242, 784
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	3 cut(s)	582, 617, 725
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	3 cut(s)	289, 476, 799
HpyCH4III	ACNGT	2 cut(s)	238, 414
HpyCH4IV	ACGT	3 cut(s)	261, 369, 678
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	3 cut(s)	113, 188, 336
HpySE526I	ACGT	3 cut(s)	261, 369, 678
Hsp92II	CATG	3 cut(s)	43, 277, 431
Kzo9I	GATC	4 cut(s)	577, 650, 745, 802
LmnI	GCTCC	1 cut(s)	753
Lsp1109I	GCAGC	2 cut(s)	174, 177
MaeII	ACGT	3 cut(s)	261, 369, 678
MaeIII	GTNAC	3 cut(s)	108, 310, 589
MalI	GATC	4 cut(s)	579, 652, 747, 804
MboI	GATC	4 cut(s)	577, 650, 745, 802
MboII	GAAGA	6 cut(s)	58, 244, 503, 587, 679, 724
MhlI	GDGCHC	2 cut(s)	270, 285
MluCI	AATT	3 cut(s)	451, 527, 729
MlyI	GAGTC	4 cut(s)	116, 293, 517, 552
MmeI	TCCRAC	2 cut(s)	459, 595
MnlI	CCTC	5 cut(s)	146, 353, 436, 563, 690
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	3 cut(s)	174, 242, 784
MspR9I	CCNGG	2 cut(s)	54, 174
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	4 cut(s)	577, 650, 745, 802
NlaIII	CATG	3 cut(s)	43, 277, 431
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	3 cut(s)	108, 310, 589
NspI	RCATGY	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	432, 720
Pfl23II	CGTACG	1 cut(s)	675
PkrI	GCNGC	2 cut(s)	164, 167
PleI	GAGTC	4 cut(s)	115, 293, 516, 551
PpsI	GAGTC	4 cut(s)	115, 293, 516, 551
Ppu21I	YACGTR	1 cut(s)	679
PshAI	GACNNNNGTC	1 cut(s)	773
Psp1406I	AACGTT	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	52
PspLI	CGTACG	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	786
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	3 cut(s)	290, 521, 677
RsaNI	GTAC	3 cut(s)	289, 520, 676
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	2 cut(s)	163, 166
Sau3AI	GATC	4 cut(s)	577, 650, 745, 802
Sau96I	GGNCC	1 cut(s)	786
SchI	GAGTC	4 cut(s)	116, 293, 517, 552
ScrFI	CCNGG	2 cut(s)	54, 174
SduI	GDGCHC	2 cut(s)	270, 285
SinI	GGWCC	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	3 cut(s)	96, 137, 707
SmoI	CTYRAG	3 cut(s)	96, 137, 707
Sse9I	AATT	3 cut(s)	451, 527, 729
SsiI	CCGC	3 cut(s)	30, 155, 308
StyD4I	CCNGG	2 cut(s)	52, 172
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	238, 414
TaiI	ACGT	3 cut(s)	264, 372, 681
TaqI	TCGA	1 cut(s)	465
TasI	AATT	3 cut(s)	451, 527, 729
TatI	WGTACW	2 cut(s)	288, 519
TfiI	GAWTC	2 cut(s)	432, 720
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	3 cut(s)	108, 310, 589
TseI	GCWGC	2 cut(s)	162, 165
Tsp45I	GTSAC	3 cut(s)	108, 310, 589
TspDTI	ATGAA	3 cut(s)	450, 483, 547
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	786
XceI	RCATGY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.