Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

46487969 .. 46488748

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0366000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATAGGTACAGTACTATGGTCTAAAGCAACGACATCCATTTCACTAAGTCGACTATCAATTCTTGTTAAACAGATTAAACAAGAAAGAGTAGATCAGAACAACGATGACTTCATAATAGCATATGTTGATACATTAATGGATTTAGAAGATCCCCTCGAGAACAGAGCATTCAATGAAGGAGAACTAGTGGATCAATGCTCGGAGGTCGTGAACTCCGGCACGGACACCATGTCAGTCACATTGCAGTGGACGATGGGGAATGTAGTGAAATATCCACGTGTTCAGAAGAGGCTTGTTGAAGAGCTTACAGAGGTTGTGGGGGTTGGAAACGAAGAGGTGAAACAGGAGGATCTTCAGAAGATGCACTATTTGAAAGCAGTGGTGATGGAGGCTCTAAGGCTTCACCCACCAGGCCACTTTGTGGTTCCACACTCGCTTATAGAGGACATTGTTCTAGGTGGACGTTATATGCTGCCAAAGAACTGTACTGTGAATTTCATGGTTGCCGAAATGGGTCAGGACCCGAGTGTTTGGGACGAGCCCATGGAGTTTAAGCCTGAGAGGTTTCTGAGTGATGGAGATAATGTACAGTGTGATATAACAGGGAGTAAAGAGATTAAGATGATACCTTTTGGGGCGGGGAGGAGGATATGTCCGGGGTGGGGTTTGTCCATGCTTCTTTTGGAGTATTCGGTGGCAAATTTAATTTGGAAGTACGAGTGGGAAGCTGTCGATGAAGTTGGTGTTGATGTGACTGAGAAGCAAGAGGCGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

259

Amino Acids

29.33

Weight (kDa)

4.6

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	22 - 253	5.3e-58	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	1 cut(s)	641
AclWI	GGATC	3 cut(s)	146, 201, 360
AcsI	RAATTY	2 cut(s)	496, 703
AcuI	CTGAAG	1 cut(s)	341
AcvI	CACGTG	1 cut(s)	281
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	5 cut(s)	10, 15, 490, 591, 719
AfiI	CCNNNNNNNGG	2 cut(s)	424, 665
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	175, 302, 376
AhdI	GACNNNNNGTC	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	2 cut(s)	307, 731
AluI	AGCT	2 cut(s)	307, 731
AlwI	GGATC	3 cut(s)	146, 201, 360
Ama87I	CYCGRG	2 cut(s)	158, 526
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	2 cut(s)	496, 703
AseI	ATTAAT	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	523
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	3 cut(s)	352, 397, 398
AvaI	CYCGRG	2 cut(s)	158, 526
AvaII	GGWCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	546
BbrPI	CACGTG	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	3 cut(s)	250, 382, 572
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	660
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	3 cut(s)	188, 458, 778
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	414, 660
Bme18I	GGWCC	1 cut(s)	523
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmeT110I	CYCGRG	2 cut(s)	158, 526
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	429, 525
BmrFI	CCNGG	2 cut(s)	414, 660
BmsI	GCATC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	546, 659
BsaXI	ACNNNNNCTCC	6 cut(s)	174, 204, 573, 603, 640, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 665
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	546, 659
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	424, 665
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	3 cut(s)	552, 563, 750
BseRI	GAGGAG	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	462
BshFI	GGCC	1 cut(s)	417
BsiHKCI	CYCGRG	2 cut(s)	158, 526
BsiSI	CCGG	2 cut(s)	219, 659
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	2 cut(s)	424, 665
BsmFI	GGGAC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	417
BsoBI	CYCGRG	2 cut(s)	158, 526
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp1407I	TGTACA	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	94, 151, 193, 352
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	3 cut(s)	553, 564, 751
BspLI	GGNNCC	2 cut(s)	429, 525
BspPI	GGATC	3 cut(s)	146, 201, 360
BspQI	GCTCTTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	589
BssECI	CCNNGG	2 cut(s)	546, 659
BssMI	GATC	4 cut(s)	94, 151, 193, 352
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	4 cut(s)	13, 488, 493, 594
Bst6I	CTCTTC	3 cut(s)	284, 297, 330
BstAUI	TGTACA	1 cut(s)	589
BstBAI	YACGTR	1 cut(s)	281
BstDEI	CTNAG	5 cut(s)	47, 398, 561, 572, 759
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	4 cut(s)	97, 154, 196, 355
BstMBI	GATC	4 cut(s)	94, 151, 193, 352
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	412, 658
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	151, 352
BstYI	RGATCY	2 cut(s)	151, 352
BsuRI	GGCC	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	35
BtsI	GCAGTG	2 cut(s)	254, 387
BtsIMutI	CAGTG	3 cut(s)	254, 387, 599
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	5 cut(s)	9, 14, 489, 590, 718
CviAII	CATG	4 cut(s)	232, 502, 547, 676
CviJI	RGCY	8 cut(s)	295, 307, 395, 403, 417, 544, 559, 731
CviKI_1	RGCY	8 cut(s)	295, 307, 395, 403, 417, 544, 559, 731
CviQI	GTAC	5 cut(s)	9, 14, 489, 590, 718
DdeI	CTNAG	5 cut(s)	47, 398, 561, 572, 759
DpnI	GATC	4 cut(s)	96, 153, 195, 354
DpnII	GATC	4 cut(s)	94, 151, 193, 352
DraIII	CACNNNGTG	1 cut(s)	424
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	3 cut(s)	284, 297, 330
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	3 cut(s)	284, 297, 330
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	341
Eco72I	CACGTG	1 cut(s)	281
Eco88I	CYCGRG	2 cut(s)	158, 526
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	4 cut(s)	235, 505, 550, 679
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	4 cut(s)	231, 501, 546, 675
FauI	CCCGC	1 cut(s)	634
FauNDI	CATATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	476
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	1 cut(s)	476
FspBI	CTAG	3 cut(s)	188, 458, 778
GluI	GCNGC	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	2 cut(s)	219, 659
Hin1II	CATG	4 cut(s)	235, 505, 550, 679
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HpaII	CCGG	2 cut(s)	219, 659
HphI	GGTGA	3 cut(s)	352, 397, 398
Hpy166II	GTNNAC	4 cut(s)	53, 214, 252, 464
Hpy188I	TCNGA	5 cut(s)	99, 205, 288, 360, 573
Hpy188III	TCNNGA	3 cut(s)	160, 211, 521
Hpy8I	GTNNAC	4 cut(s)	53, 214, 252, 464
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	4 cut(s)	13, 488, 493, 594
HpyCH4IV	ACGT	2 cut(s)	280, 466
HpyCH4V	TGCA	2 cut(s)	247, 367
HpyF3I	CTNAG	5 cut(s)	47, 398, 561, 572, 759
HpySE526I	ACGT	2 cut(s)	280, 466
Hsp92II	CATG	4 cut(s)	235, 505, 550, 679
Kzo9I	GATC	4 cut(s)	94, 151, 193, 352
LguI	GCTCTTC	1 cut(s)	297
LpnPI	CCDG	8 cut(s)	232, 332, 399, 426, 506, 573, 591, 672
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	188, 458, 778
MaeII	ACGT	2 cut(s)	280, 466
MaeIII	GTNAC	2 cut(s)	238, 754
MalI	GATC	4 cut(s)	96, 153, 195, 354
MboI	GATC	4 cut(s)	94, 151, 193, 352
MboII	GAAGA	6 cut(s)	161, 301, 314, 347, 347, 373
MflI	RGATCY	2 cut(s)	151, 352
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	4 cut(s)	60, 496, 703, 708
MmeI	TCCRAC	1 cut(s)	307
MseI	TTAA	6 cut(s)	69, 78, 137, 555, 621, 707
MslI	CAYNNNNRTG	1 cut(s)	247
MspI	CCGG	2 cut(s)	219, 659
MspR9I	CCNGG	2 cut(s)	414, 660
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	414
NciI	CCSGG	1 cut(s)	660
NcoI	CCATGG	1 cut(s)	546
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	4 cut(s)	94, 151, 193, 352
NlaIII	CATG	4 cut(s)	235, 505, 550, 679
NlaIV	GGNNCC	2 cut(s)	429, 525
NmuCI	GTSAC	2 cut(s)	238, 754
PaeR7I	CTCGAG	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	477
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	429, 525
PspPI	GGNCC	1 cut(s)	523
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	151, 352
RsaI	GTAC	5 cut(s)	10, 15, 490, 591, 719
RsaNI	GTAC	5 cut(s)	9, 14, 489, 590, 718
RseI	CAYNNNNRTG	1 cut(s)	247
SalI	GTCGAC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	6 cut(s)	69, 78, 137, 555, 621, 707
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	4 cut(s)	94, 151, 193, 352
Sau96I	GGNCC	1 cut(s)	523
ScaI	AGTACT	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	414, 660
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	523
SlaI	CTCGAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	4 cut(s)	60, 496, 703, 708
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	3 cut(s)	188, 458, 778
StyD4I	CCNGG	2 cut(s)	412, 658
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	4 cut(s)	13, 488, 493, 594
TaiI	ACGT	2 cut(s)	283, 469
TaqI	TCGA	3 cut(s)	52, 159, 735
TasI	AATT	4 cut(s)	60, 496, 703, 708
TatI	WGTACW	3 cut(s)	13, 488, 589
Tru1I	TTAA	6 cut(s)	69, 78, 137, 555, 621, 707
Tru9I	TTAA	6 cut(s)	69, 78, 137, 555, 621, 707
TscAI	CASTG	3 cut(s)	254, 387, 599
TseFI	GTSAC	2 cut(s)	238, 754
TseI	GCWGC	1 cut(s)	475
Tsp45I	GTSAC	2 cut(s)	238, 754
TspDTI	ATGAA	4 cut(s)	103, 192, 490, 753
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	3 cut(s)	254, 387, 599
Van91I	CCANNNNNTGG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	137
XapI	RAATTY	2 cut(s)	496, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	3 cut(s)	188, 458, 778
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.